Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4563

Experiment: Manganese (II) chloride tetrahydrate 0.00078125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4562 and Pf6N2E2_4563 are separated by 242 nucleotidesPf6N2E2_4563 and Pf6N2E2_4564 are separated by 248 nucleotides Pf6N2E2_4562 - L-cystine uptake protein TcyP, at 5,291,062 to 5,292,453 _4562 Pf6N2E2_4563 - Phosphoserine phosphatase (EC 3.1.3.3), at 5,292,696 to 5,293,751 _4563 Pf6N2E2_4564 - Dihydroxy-acid dehydratase (EC 4.2.1.9), at 5,294,000 to 5,295,841 _4564 Position (kb) 5292 5293 5294Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5291.994 kb on - strand, within Pf6N2E2_4562at 5292.303 kb on - strand, within Pf6N2E2_4562at 5292.303 kb on - strand, within Pf6N2E2_4562at 5292.341 kb on - strandat 5292.341 kb on - strandat 5292.514 kb on + strandat 5292.515 kb on - strandat 5292.515 kb on - strandat 5292.526 kb on - strandat 5292.530 kb on - strandat 5292.537 kb on + strandat 5292.555 kb on + strandat 5292.555 kb on + strandat 5292.556 kb on - strandat 5292.595 kb on + strandat 5292.837 kb on - strand, within Pf6N2E2_4563at 5292.840 kb on + strand, within Pf6N2E2_4563at 5292.840 kb on + strand, within Pf6N2E2_4563at 5292.840 kb on + strand, within Pf6N2E2_4563at 5292.840 kb on + strand, within Pf6N2E2_4563at 5292.841 kb on - strand, within Pf6N2E2_4563at 5292.841 kb on - strand, within Pf6N2E2_4563at 5292.841 kb on - strand, within Pf6N2E2_4563at 5292.841 kb on - strand, within Pf6N2E2_4563at 5292.841 kb on - strand, within Pf6N2E2_4563at 5292.841 kb on - strand, within Pf6N2E2_4563at 5292.841 kb on - strand, within Pf6N2E2_4563at 5292.870 kb on + strand, within Pf6N2E2_4563at 5292.871 kb on - strand, within Pf6N2E2_4563at 5293.005 kb on + strand, within Pf6N2E2_4563at 5293.005 kb on + strand, within Pf6N2E2_4563at 5293.005 kb on + strand, within Pf6N2E2_4563at 5293.006 kb on - strand, within Pf6N2E2_4563at 5293.006 kb on - strand, within Pf6N2E2_4563at 5293.008 kb on + strand, within Pf6N2E2_4563at 5293.008 kb on + strand, within Pf6N2E2_4563at 5293.009 kb on - strand, within Pf6N2E2_4563at 5293.009 kb on - strand, within Pf6N2E2_4563at 5293.009 kb on - strand, within Pf6N2E2_4563at 5293.044 kb on + strand, within Pf6N2E2_4563at 5293.099 kb on - strand, within Pf6N2E2_4563at 5293.099 kb on - strand, within Pf6N2E2_4563at 5293.099 kb on - strand, within Pf6N2E2_4563at 5293.099 kb on - strand, within Pf6N2E2_4563at 5293.143 kb on + strand, within Pf6N2E2_4563at 5293.143 kb on + strand, within Pf6N2E2_4563at 5293.143 kb on + strand, within Pf6N2E2_4563at 5293.143 kb on + strand, within Pf6N2E2_4563at 5293.143 kb on + strand, within Pf6N2E2_4563at 5293.143 kb on + strand, within Pf6N2E2_4563at 5293.143 kb on + strand, within Pf6N2E2_4563at 5293.143 kb on + strand, within Pf6N2E2_4563at 5293.144 kb on - strand, within Pf6N2E2_4563at 5293.144 kb on - strand, within Pf6N2E2_4563at 5293.144 kb on - strand, within Pf6N2E2_4563at 5293.144 kb on - strand, within Pf6N2E2_4563at 5293.144 kb on - strand, within Pf6N2E2_4563at 5293.146 kb on + strand, within Pf6N2E2_4563at 5293.146 kb on + strand, within Pf6N2E2_4563at 5293.146 kb on + strand, within Pf6N2E2_4563at 5293.146 kb on + strand, within Pf6N2E2_4563at 5293.146 kb on + strand, within Pf6N2E2_4563at 5293.146 kb on + strand, within Pf6N2E2_4563at 5293.147 kb on - strand, within Pf6N2E2_4563at 5293.147 kb on - strand, within Pf6N2E2_4563at 5293.147 kb on - strand, within Pf6N2E2_4563at 5293.170 kb on + strand, within Pf6N2E2_4563at 5293.170 kb on + strand, within Pf6N2E2_4563at 5293.170 kb on + strand, within Pf6N2E2_4563at 5293.171 kb on - strand, within Pf6N2E2_4563at 5293.215 kb on + strand, within Pf6N2E2_4563at 5293.215 kb on + strand, within Pf6N2E2_4563at 5293.215 kb on + strand, within Pf6N2E2_4563at 5293.215 kb on + strand, within Pf6N2E2_4563at 5293.216 kb on - strand, within Pf6N2E2_4563at 5293.216 kb on - strand, within Pf6N2E2_4563at 5293.216 kb on - strand, within Pf6N2E2_4563at 5293.216 kb on - strand, within Pf6N2E2_4563at 5293.216 kb on - strand, within Pf6N2E2_4563at 5293.216 kb on - strand, within Pf6N2E2_4563at 5293.248 kb on + strand, within Pf6N2E2_4563at 5293.248 kb on + strand, within Pf6N2E2_4563at 5293.248 kb on + strand, within Pf6N2E2_4563at 5293.248 kb on + strand, within Pf6N2E2_4563at 5293.249 kb on - strand, within Pf6N2E2_4563at 5293.249 kb on - strand, within Pf6N2E2_4563at 5293.249 kb on - strand, within Pf6N2E2_4563at 5293.249 kb on - strand, within Pf6N2E2_4563at 5293.249 kb on - strand, within Pf6N2E2_4563at 5293.249 kb on - strand, within Pf6N2E2_4563at 5293.249 kb on - strand, within Pf6N2E2_4563at 5293.249 kb on - strand, within Pf6N2E2_4563at 5293.249 kb on - strand, within Pf6N2E2_4563at 5293.311 kb on + strand, within Pf6N2E2_4563at 5293.312 kb on - strand, within Pf6N2E2_4563at 5293.413 kb on + strand, within Pf6N2E2_4563at 5293.414 kb on - strand, within Pf6N2E2_4563at 5293.443 kb on + strand, within Pf6N2E2_4563at 5293.444 kb on - strand, within Pf6N2E2_4563at 5293.453 kb on - strand, within Pf6N2E2_4563at 5293.453 kb on - strand, within Pf6N2E2_4563at 5293.506 kb on + strand, within Pf6N2E2_4563at 5293.506 kb on + strand, within Pf6N2E2_4563at 5293.506 kb on + strand, within Pf6N2E2_4563at 5293.506 kb on + strand, within Pf6N2E2_4563at 5293.506 kb on + strand, within Pf6N2E2_4563at 5293.506 kb on + strand, within Pf6N2E2_4563at 5293.506 kb on + strand, within Pf6N2E2_4563at 5293.506 kb on + strand, within Pf6N2E2_4563at 5293.507 kb on - strand, within Pf6N2E2_4563at 5293.507 kb on - strand, within Pf6N2E2_4563at 5293.507 kb on - strand, within Pf6N2E2_4563at 5293.507 kb on - strand, within Pf6N2E2_4563at 5293.507 kb on - strand, within Pf6N2E2_4563at 5293.566 kb on + strand, within Pf6N2E2_4563at 5293.566 kb on + strand, within Pf6N2E2_4563at 5293.566 kb on + strand, within Pf6N2E2_4563at 5293.567 kb on - strand, within Pf6N2E2_4563at 5293.567 kb on - strand, within Pf6N2E2_4563at 5293.567 kb on - strand, within Pf6N2E2_4563at 5293.591 kb on + strand, within Pf6N2E2_4563at 5293.592 kb on - strand, within Pf6N2E2_4563at 5293.592 kb on - strand, within Pf6N2E2_4563at 5293.635 kb on + strand, within Pf6N2E2_4563at 5293.635 kb on + strand, within Pf6N2E2_4563at 5293.635 kb on + strand, within Pf6N2E2_4563at 5293.635 kb on + strand, within Pf6N2E2_4563at 5293.635 kb on + strand, within Pf6N2E2_4563at 5293.635 kb on + strand, within Pf6N2E2_4563at 5293.635 kb on + strand, within Pf6N2E2_4563at 5293.635 kb on + strand, within Pf6N2E2_4563at 5293.635 kb on + strand, within Pf6N2E2_4563at 5293.635 kb on + strand, within Pf6N2E2_4563at 5293.635 kb on + strand, within Pf6N2E2_4563at 5293.635 kb on + strand, within Pf6N2E2_4563at 5293.635 kb on + strand, within Pf6N2E2_4563at 5293.635 kb on + strand, within Pf6N2E2_4563at 5293.636 kb on - strand, within Pf6N2E2_4563at 5293.636 kb on - strand, within Pf6N2E2_4563at 5293.636 kb on - strand, within Pf6N2E2_4563at 5293.636 kb on - strand, within Pf6N2E2_4563at 5293.636 kb on - strand, within Pf6N2E2_4563at 5293.636 kb on - strand, within Pf6N2E2_4563at 5293.636 kb on - strand, within Pf6N2E2_4563at 5293.750 kb on - strandat 5293.750 kb on - strandat 5293.774 kb on - strandat 5293.774 kb on - strandat 5293.774 kb on - strandat 5293.815 kb on + strandat 5293.815 kb on + strandat 5293.816 kb on - strandat 5293.871 kb on - strandat 5293.982 kb on + strandat 5293.983 kb on - strandat 5294.027 kb on - strandat 5294.068 kb on - strandat 5294.068 kb on - strandat 5294.355 kb on + strand, within Pf6N2E2_4564at 5294.367 kb on + strand, within Pf6N2E2_4564at 5294.368 kb on - strand, within Pf6N2E2_4564at 5294.571 kb on + strand, within Pf6N2E2_4564at 5294.601 kb on + strand, within Pf6N2E2_4564at 5294.602 kb on - strand, within Pf6N2E2_4564

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 0.00078125 M
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5,291,994 - Pf6N2E2_4562 0.67 -2.5
5,292,303 - Pf6N2E2_4562 0.89 +0.6
5,292,303 - Pf6N2E2_4562 0.89 +0.3
5,292,341 - -0.8
5,292,341 - +0.1
5,292,514 + -2.6
5,292,515 - +0.8
5,292,515 - -0.3
5,292,526 - -1.2
5,292,530 - +0.2
5,292,537 + +0.7
5,292,555 + +0.8
5,292,555 + -1.3
5,292,556 - +0.0
5,292,595 + +0.3
5,292,837 - Pf6N2E2_4563 0.13 +0.7
5,292,840 + Pf6N2E2_4563 0.14 +0.5
5,292,840 + Pf6N2E2_4563 0.14 -0.4
5,292,840 + Pf6N2E2_4563 0.14 +0.4
5,292,840 + Pf6N2E2_4563 0.14 +1.0
5,292,841 - Pf6N2E2_4563 0.14 -0.0
5,292,841 - Pf6N2E2_4563 0.14 +0.5
5,292,841 - Pf6N2E2_4563 0.14 -0.2
5,292,841 - Pf6N2E2_4563 0.14 +2.3
5,292,841 - Pf6N2E2_4563 0.14 -0.5
5,292,841 - Pf6N2E2_4563 0.14 -0.2
5,292,841 - Pf6N2E2_4563 0.14 -1.5
5,292,870 + Pf6N2E2_4563 0.16 +0.6
5,292,871 - Pf6N2E2_4563 0.17 -2.4
5,293,005 + Pf6N2E2_4563 0.29 -1.3
5,293,005 + Pf6N2E2_4563 0.29 -0.4
5,293,005 + Pf6N2E2_4563 0.29 +0.5
5,293,006 - Pf6N2E2_4563 0.29 -0.6
5,293,006 - Pf6N2E2_4563 0.29 +0.4
5,293,008 + Pf6N2E2_4563 0.30 +0.4
5,293,008 + Pf6N2E2_4563 0.30 +1.1
5,293,009 - Pf6N2E2_4563 0.30 -1.3
5,293,009 - Pf6N2E2_4563 0.30 -0.1
5,293,009 - Pf6N2E2_4563 0.30 +0.7
5,293,044 + Pf6N2E2_4563 0.33 -0.3
5,293,099 - Pf6N2E2_4563 0.38 +1.0
5,293,099 - Pf6N2E2_4563 0.38 -0.6
5,293,099 - Pf6N2E2_4563 0.38 -1.6
5,293,099 - Pf6N2E2_4563 0.38 -0.7
5,293,143 + Pf6N2E2_4563 0.42 +0.9
5,293,143 + Pf6N2E2_4563 0.42 -0.4
5,293,143 + Pf6N2E2_4563 0.42 +0.5
5,293,143 + Pf6N2E2_4563 0.42 -0.9
5,293,143 + Pf6N2E2_4563 0.42 +0.5
5,293,143 + Pf6N2E2_4563 0.42 +1.2
5,293,143 + Pf6N2E2_4563 0.42 +0.7
5,293,143 + Pf6N2E2_4563 0.42 -0.7
5,293,144 - Pf6N2E2_4563 0.42 +0.1
5,293,144 - Pf6N2E2_4563 0.42 +1.2
5,293,144 - Pf6N2E2_4563 0.42 +0.7
5,293,144 - Pf6N2E2_4563 0.42 +1.2
5,293,144 - Pf6N2E2_4563 0.42 +0.1
5,293,146 + Pf6N2E2_4563 0.43 -1.6
5,293,146 + Pf6N2E2_4563 0.43 +1.1
5,293,146 + Pf6N2E2_4563 0.43 -0.5
5,293,146 + Pf6N2E2_4563 0.43 -1.4
5,293,146 + Pf6N2E2_4563 0.43 +0.3
5,293,146 + Pf6N2E2_4563 0.43 +0.6
5,293,147 - Pf6N2E2_4563 0.43 -0.1
5,293,147 - Pf6N2E2_4563 0.43 +0.4
5,293,147 - Pf6N2E2_4563 0.43 +0.2
5,293,170 + Pf6N2E2_4563 0.45 -2.1
5,293,170 + Pf6N2E2_4563 0.45 -1.0
5,293,170 + Pf6N2E2_4563 0.45 -0.4
5,293,171 - Pf6N2E2_4563 0.45 +0.4
5,293,215 + Pf6N2E2_4563 0.49 +0.3
5,293,215 + Pf6N2E2_4563 0.49 -0.3
5,293,215 + Pf6N2E2_4563 0.49 +0.2
5,293,215 + Pf6N2E2_4563 0.49 -0.1
5,293,216 - Pf6N2E2_4563 0.49 +3.7
5,293,216 - Pf6N2E2_4563 0.49 -0.6
5,293,216 - Pf6N2E2_4563 0.49 -0.2
5,293,216 - Pf6N2E2_4563 0.49 +0.2
5,293,216 - Pf6N2E2_4563 0.49 +0.3
5,293,216 - Pf6N2E2_4563 0.49 +0.8
5,293,248 + Pf6N2E2_4563 0.52 +0.2
5,293,248 + Pf6N2E2_4563 0.52 +1.2
5,293,248 + Pf6N2E2_4563 0.52 +0.1
5,293,248 + Pf6N2E2_4563 0.52 -0.8
5,293,249 - Pf6N2E2_4563 0.52 +2.0
5,293,249 - Pf6N2E2_4563 0.52 +0.7
5,293,249 - Pf6N2E2_4563 0.52 -0.4
5,293,249 - Pf6N2E2_4563 0.52 -1.3
5,293,249 - Pf6N2E2_4563 0.52 +1.2
5,293,249 - Pf6N2E2_4563 0.52 +0.2
5,293,249 - Pf6N2E2_4563 0.52 +1.0
5,293,249 - Pf6N2E2_4563 0.52 +0.2
5,293,249 - Pf6N2E2_4563 0.52 +0.5
5,293,311 + Pf6N2E2_4563 0.58 +0.1
5,293,312 - Pf6N2E2_4563 0.58 -0.2
5,293,413 + Pf6N2E2_4563 0.68 +0.1
5,293,414 - Pf6N2E2_4563 0.68 +1.2
5,293,443 + Pf6N2E2_4563 0.71 -0.7
5,293,444 - Pf6N2E2_4563 0.71 +0.3
5,293,453 - Pf6N2E2_4563 0.72 +0.1
5,293,453 - Pf6N2E2_4563 0.72 +0.9
5,293,506 + Pf6N2E2_4563 0.77 +0.3
5,293,506 + Pf6N2E2_4563 0.77 -1.1
5,293,506 + Pf6N2E2_4563 0.77 -2.8
5,293,506 + Pf6N2E2_4563 0.77 -1.1
5,293,506 + Pf6N2E2_4563 0.77 +0.4
5,293,506 + Pf6N2E2_4563 0.77 +0.0
5,293,506 + Pf6N2E2_4563 0.77 -0.7
5,293,506 + Pf6N2E2_4563 0.77 +0.2
5,293,507 - Pf6N2E2_4563 0.77 +1.4
5,293,507 - Pf6N2E2_4563 0.77 -0.6
5,293,507 - Pf6N2E2_4563 0.77 -0.0
5,293,507 - Pf6N2E2_4563 0.77 +0.2
5,293,507 - Pf6N2E2_4563 0.77 +0.7
5,293,566 + Pf6N2E2_4563 0.82 +0.2
5,293,566 + Pf6N2E2_4563 0.82 +0.3
5,293,566 + Pf6N2E2_4563 0.82 -0.2
5,293,567 - Pf6N2E2_4563 0.82 -1.7
5,293,567 - Pf6N2E2_4563 0.82 +0.1
5,293,567 - Pf6N2E2_4563 0.82 -0.6
5,293,591 + Pf6N2E2_4563 0.85 +1.0
5,293,592 - Pf6N2E2_4563 0.85 +1.0
5,293,592 - Pf6N2E2_4563 0.85 +0.2
5,293,635 + Pf6N2E2_4563 0.89 -0.4
5,293,635 + Pf6N2E2_4563 0.89 -2.4
5,293,635 + Pf6N2E2_4563 0.89 -1.0
5,293,635 + Pf6N2E2_4563 0.89 +1.3
5,293,635 + Pf6N2E2_4563 0.89 +0.8
5,293,635 + Pf6N2E2_4563 0.89 +0.1
5,293,635 + Pf6N2E2_4563 0.89 -1.8
5,293,635 + Pf6N2E2_4563 0.89 +0.6
5,293,635 + Pf6N2E2_4563 0.89 -0.3
5,293,635 + Pf6N2E2_4563 0.89 +0.1
5,293,635 + Pf6N2E2_4563 0.89 +0.4
5,293,635 + Pf6N2E2_4563 0.89 +0.7
5,293,635 + Pf6N2E2_4563 0.89 -1.9
5,293,635 + Pf6N2E2_4563 0.89 -0.7
5,293,636 - Pf6N2E2_4563 0.89 -0.4
5,293,636 - Pf6N2E2_4563 0.89 +0.4
5,293,636 - Pf6N2E2_4563 0.89 -0.1
5,293,636 - Pf6N2E2_4563 0.89 +0.9
5,293,636 - Pf6N2E2_4563 0.89 -0.1
5,293,636 - Pf6N2E2_4563 0.89 +0.5
5,293,636 - Pf6N2E2_4563 0.89 +0.3
5,293,750 - -0.0
5,293,750 - +0.1
5,293,774 - -0.2
5,293,774 - -0.3
5,293,774 - +0.4
5,293,815 + +0.6
5,293,815 + +0.6
5,293,816 - -0.3
5,293,871 - +0.2
5,293,982 + -2.6
5,293,983 - -0.1
5,294,027 - -0.8
5,294,068 - -1.0
5,294,068 - -0.0
5,294,355 + Pf6N2E2_4564 0.19 +1.4
5,294,367 + Pf6N2E2_4564 0.20 -0.4
5,294,368 - Pf6N2E2_4564 0.20 -0.0
5,294,571 + Pf6N2E2_4564 0.31 +1.1
5,294,601 + Pf6N2E2_4564 0.33 +0.0
5,294,602 - Pf6N2E2_4564 0.33 -0.4

Or see this region's nucleotide sequence