Strain Fitness in Dechlorosoma suillum PS around Dsui_2177

Experiment: anaerobic ALP with 3 all (C)s and 5mM perchlorate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2176 and Dsui_2177 are separated by 89 nucleotidesDsui_2177 and Dsui_2178 are separated by 67 nucleotidesDsui_2178 and Dsui_2179 are separated by 34 nucleotides Dsui_2176: Dsui_2176 - putative esterase of the alpha-beta hydrolase superfamily, at 2,312,502 to 2,313,542 _2176 Dsui_2177: Dsui_2177 - methyltransferase family protein, at 2,313,632 to 2,314,270 _2177 Dsui_2178: Dsui_2178 - hypothetical protein, at 2,314,338 to 2,315,144 _2178 Dsui_2179: Dsui_2179 - conserved protein of DIM6/NTAB family, at 2,315,179 to 2,315,745 _2179 Position (kb) 2313 2314 2315Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2312.701 kb on - strandat 2312.701 kb on - strand, within Dsui_2176at 2312.748 kb on + strand, within Dsui_2176at 2312.774 kb on + strand, within Dsui_2176at 2312.779 kb on + strand, within Dsui_2176at 2312.800 kb on + strand, within Dsui_2176at 2312.936 kb on + strandat 2313.083 kb on + strand, within Dsui_2176at 2313.213 kb on - strand, within Dsui_2176at 2313.217 kb on + strand, within Dsui_2176at 2313.229 kb on + strand, within Dsui_2176at 2313.351 kb on + strand, within Dsui_2176at 2313.444 kb on + strandat 2313.493 kb on + strandat 2313.578 kb on + strandat 2313.608 kb on + strandat 2313.663 kb on - strandat 2313.682 kb on - strandat 2313.685 kb on + strandat 2313.713 kb on - strandat 2313.786 kb on + strand, within Dsui_2177at 2313.904 kb on + strand, within Dsui_2177at 2313.951 kb on - strandat 2314.012 kb on + strand, within Dsui_2177at 2314.120 kb on - strand, within Dsui_2177at 2314.167 kb on + strandat 2314.243 kb on - strandat 2314.371 kb on + strandat 2314.429 kb on + strand, within Dsui_2178at 2314.523 kb on - strand, within Dsui_2178at 2314.561 kb on + strand, within Dsui_2178at 2314.583 kb on + strand, within Dsui_2178at 2314.826 kb on + strand, within Dsui_2178at 2314.852 kb on + strandat 2314.857 kb on - strandat 2315.096 kb on + strandat 2315.214 kb on - strandat 2315.254 kb on + strand, within Dsui_2179

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Per-strain Table

Position Strand Gene LocusTag Fraction anaerobic ALP with 3 all (C)s and 5mM perchlorate
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2,312,701 - -0.1
2,312,701 - Dsui_2176 0.19 -1.1
2,312,748 + Dsui_2176 0.24 -1.1
2,312,774 + Dsui_2176 0.26 -2.1
2,312,779 + Dsui_2176 0.27 -1.2
2,312,800 + Dsui_2176 0.29 -2.1
2,312,936 + -0.1
2,313,083 + Dsui_2176 0.56 -0.6
2,313,213 - Dsui_2176 0.68 -1.6
2,313,217 + Dsui_2176 0.69 -0.1
2,313,229 + Dsui_2176 0.70 -0.4
2,313,351 + Dsui_2176 0.82 -0.7
2,313,444 + -1.1
2,313,493 + -0.1
2,313,578 + -0.4
2,313,608 + -0.1
2,313,663 - -0.1
2,313,682 - +0.9
2,313,685 + -3.1
2,313,713 - +1.9
2,313,786 + Dsui_2177 0.24 -0.2
2,313,904 + Dsui_2177 0.43 -0.1
2,313,951 - +0.7
2,314,012 + Dsui_2177 0.59 -0.5
2,314,120 - Dsui_2177 0.76 -0.4
2,314,167 + -1.6
2,314,243 - +2.3
2,314,371 + +0.1
2,314,429 + Dsui_2178 0.11 +1.2
2,314,523 - Dsui_2178 0.23 -0.2
2,314,561 + Dsui_2178 0.28 +2.0
2,314,583 + Dsui_2178 0.30 -0.1
2,314,826 + Dsui_2178 0.60 +0.7
2,314,852 + -0.1
2,314,857 - -0.5
2,315,096 + -0.1
2,315,214 - +0.6
2,315,254 + Dsui_2179 0.13 +0.6

Or see this region's nucleotide sequence