Strain Fitness in Dechlorosoma suillum PS around Dsui_2149

Experiment: anaerobic ALP with 3 all (C)s and 5mM perchlorate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2148 and Dsui_2149 are separated by 201 nucleotidesDsui_2149 and Dsui_2150 are separated by 4 nucleotides Dsui_2148: Dsui_2148 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,275,744 to 2,278,623 _2148 Dsui_2149: Dsui_2149 - DNA helicase, Rad3, at 2,278,825 to 2,280,777 _2149 Dsui_2150: Dsui_2150 - hypothetical protein, at 2,280,782 to 2,282,134 _2150 Position (kb) 2278 2279 2280 2281Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2277.888 kb on + strandat 2278.089 kb on + strand, within Dsui_2148at 2278.125 kb on + strand, within Dsui_2148at 2278.191 kb on + strandat 2278.307 kb on + strandat 2278.336 kb on - strandat 2278.363 kb on - strandat 2278.543 kb on - strandat 2278.565 kb on - strandat 2278.565 kb on - strandat 2278.631 kb on - strandat 2278.664 kb on + strandat 2279.015 kb on - strandat 2279.136 kb on + strand, within Dsui_2149at 2279.230 kb on + strand, within Dsui_2149at 2279.290 kb on + strand, within Dsui_2149at 2279.362 kb on + strand, within Dsui_2149at 2279.362 kb on + strand, within Dsui_2149at 2279.370 kb on - strandat 2279.370 kb on - strandat 2279.593 kb on + strand, within Dsui_2149at 2279.656 kb on - strandat 2279.664 kb on + strand, within Dsui_2149at 2279.708 kb on - strandat 2279.805 kb on + strand, within Dsui_2149at 2279.805 kb on + strand, within Dsui_2149at 2279.805 kb on + strand, within Dsui_2149at 2279.848 kb on - strandat 2279.918 kb on + strand, within Dsui_2149at 2279.918 kb on + strand, within Dsui_2149at 2279.925 kb on + strand, within Dsui_2149at 2280.019 kb on - strandat 2280.153 kb on - strandat 2280.353 kb on - strand, within Dsui_2149at 2280.464 kb on + strand, within Dsui_2149at 2280.576 kb on + strand, within Dsui_2149at 2280.654 kb on - strandat 2280.786 kb on - strandat 2280.868 kb on - strandat 2280.870 kb on + strandat 2280.881 kb on + strandat 2280.881 kb on + strandat 2280.889 kb on - strandat 2281.146 kb on + strand, within Dsui_2150at 2281.382 kb on + strand, within Dsui_2150at 2281.490 kb on + strand, within Dsui_2150at 2281.604 kb on - strand, within Dsui_2150at 2281.673 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction anaerobic ALP with 3 all (C)s and 5mM perchlorate
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2,277,888 + -2.6
2,278,089 + Dsui_2148 0.81 +1.0
2,278,125 + Dsui_2148 0.83 +2.0
2,278,191 + -0.0
2,278,307 + -0.6
2,278,336 - +1.3
2,278,363 - +1.4
2,278,543 - -0.5
2,278,565 - +1.3
2,278,565 - +0.6
2,278,631 - +0.7
2,278,664 + -1.0
2,279,015 - -2.0
2,279,136 + Dsui_2149 0.16 -0.0
2,279,230 + Dsui_2149 0.21 +0.3
2,279,290 + Dsui_2149 0.24 -0.8
2,279,362 + Dsui_2149 0.27 -1.0
2,279,362 + Dsui_2149 0.27 -0.5
2,279,370 - -0.0
2,279,370 - -0.0
2,279,593 + Dsui_2149 0.39 -4.1
2,279,656 - -0.0
2,279,664 + Dsui_2149 0.43 +0.3
2,279,708 - -0.0
2,279,805 + Dsui_2149 0.50 -0.0
2,279,805 + Dsui_2149 0.50 -0.0
2,279,805 + Dsui_2149 0.50 -0.0
2,279,848 - -0.0
2,279,918 + Dsui_2149 0.56 -2.2
2,279,918 + Dsui_2149 0.56 -1.9
2,279,925 + Dsui_2149 0.56 -0.5
2,280,019 - -1.6
2,280,153 - -0.0
2,280,353 - Dsui_2149 0.78 -0.8
2,280,464 + Dsui_2149 0.84 -2.0
2,280,576 + Dsui_2149 0.90 -1.0
2,280,654 - -0.0
2,280,786 - -1.6
2,280,868 - -1.0
2,280,870 + -2.8
2,280,881 + -2.7
2,280,881 + -2.8
2,280,889 - -1.8
2,281,146 + Dsui_2150 0.27 -3.7
2,281,382 + Dsui_2150 0.44 -0.0
2,281,490 + Dsui_2150 0.52 -3.6
2,281,604 - Dsui_2150 0.61 -2.0
2,281,673 - -0.0

Or see this region's nucleotide sequence