Strain Fitness in Dechlorosoma suillum PS around Dsui_2057

Experiment: anaerobic ALP with 3 all (C)s and 5mM perchlorate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2056 and Dsui_2057 are separated by 498 nucleotidesDsui_2057 and Dsui_2058 overlap by 1 nucleotidesDsui_2058 and Dsui_2059 overlap by 4 nucleotides Dsui_2056: Dsui_2056 - hypothetical protein, at 2,175,588 to 2,176,142 _2056 Dsui_2057: Dsui_2057 - ABC-type branched-chain amino acid transport systems, ATPase component, at 2,176,641 to 2,177,354 _2057 Dsui_2058: Dsui_2058 - ABC-type branched-chain amino acid transport systems, ATPase component, at 2,177,354 to 2,178,136 _2058 Dsui_2059: Dsui_2059 - ABC-type branched-chain amino acid transport system, permease component, at 2,178,133 to 2,178,996 _2059 Position (kb) 2176 2177 2178Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2175.678 kb on - strand, within Dsui_2056at 2175.682 kb on + strand, within Dsui_2056at 2175.682 kb on + strand, within Dsui_2056at 2175.682 kb on + strand, within Dsui_2056at 2175.690 kb on - strand, within Dsui_2056at 2175.690 kb on - strand, within Dsui_2056at 2175.690 kb on - strand, within Dsui_2056at 2175.698 kb on + strand, within Dsui_2056at 2175.706 kb on - strand, within Dsui_2056at 2175.719 kb on + strand, within Dsui_2056at 2175.719 kb on + strand, within Dsui_2056at 2175.727 kb on - strand, within Dsui_2056at 2175.727 kb on - strand, within Dsui_2056at 2175.760 kb on - strand, within Dsui_2056at 2175.760 kb on - strand, within Dsui_2056at 2175.760 kb on - strand, within Dsui_2056at 2175.801 kb on - strandat 2175.805 kb on + strand, within Dsui_2056at 2175.811 kb on + strand, within Dsui_2056at 2175.831 kb on - strand, within Dsui_2056at 2175.867 kb on - strand, within Dsui_2056at 2175.877 kb on - strand, within Dsui_2056at 2175.887 kb on + strand, within Dsui_2056at 2175.895 kb on + strand, within Dsui_2056at 2175.912 kb on - strand, within Dsui_2056at 2175.959 kb on - strand, within Dsui_2056at 2175.973 kb on + strandat 2175.984 kb on + strand, within Dsui_2056at 2176.051 kb on + strand, within Dsui_2056at 2176.071 kb on - strand, within Dsui_2056at 2176.071 kb on - strand, within Dsui_2056at 2176.105 kb on - strandat 2176.105 kb on - strandat 2176.119 kb on - strandat 2176.138 kb on + strandat 2176.185 kb on - strandat 2176.199 kb on + strandat 2176.199 kb on + strandat 2176.214 kb on - strandat 2176.217 kb on - strandat 2176.219 kb on - strandat 2176.219 kb on - strandat 2176.278 kb on + strandat 2176.363 kb on + strandat 2176.667 kb on + strandat 2176.807 kb on + strand, within Dsui_2057at 2176.891 kb on - strand, within Dsui_2057at 2176.970 kb on + strand, within Dsui_2057at 2176.978 kb on - strand, within Dsui_2057at 2177.188 kb on + strandat 2177.196 kb on - strand, within Dsui_2057at 2177.196 kb on - strand, within Dsui_2057at 2177.231 kb on - strand, within Dsui_2057at 2177.299 kb on + strandat 2177.483 kb on - strand, within Dsui_2058at 2177.519 kb on - strand, within Dsui_2058at 2177.700 kb on - strand, within Dsui_2058at 2177.905 kb on + strand, within Dsui_2058at 2178.017 kb on - strand, within Dsui_2058at 2178.144 kb on - strandat 2178.146 kb on + strandat 2178.200 kb on + strandat 2178.299 kb on - strand, within Dsui_2059at 2178.299 kb on - strand, within Dsui_2059at 2178.334 kb on + strand, within Dsui_2059

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Per-strain Table

Position Strand Gene LocusTag Fraction anaerobic ALP with 3 all (C)s and 5mM perchlorate
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2,175,678 - Dsui_2056 0.16 -0.0
2,175,682 + Dsui_2056 0.17 -0.0
2,175,682 + Dsui_2056 0.17 -0.9
2,175,682 + Dsui_2056 0.17 +1.1
2,175,690 - Dsui_2056 0.18 -0.6
2,175,690 - Dsui_2056 0.18 +1.0
2,175,690 - Dsui_2056 0.18 -0.0
2,175,698 + Dsui_2056 0.20 +1.5
2,175,706 - Dsui_2056 0.21 -0.0
2,175,719 + Dsui_2056 0.24 -1.6
2,175,719 + Dsui_2056 0.24 +1.0
2,175,727 - Dsui_2056 0.25 -0.0
2,175,727 - Dsui_2056 0.25 -0.0
2,175,760 - Dsui_2056 0.31 +0.2
2,175,760 - Dsui_2056 0.31 -2.0
2,175,760 - Dsui_2056 0.31 +1.0
2,175,801 - +1.4
2,175,805 + Dsui_2056 0.39 +1.0
2,175,811 + Dsui_2056 0.40 +0.6
2,175,831 - Dsui_2056 0.44 -0.4
2,175,867 - Dsui_2056 0.50 +3.0
2,175,877 - Dsui_2056 0.52 -0.3
2,175,887 + Dsui_2056 0.54 -1.0
2,175,895 + Dsui_2056 0.55 +0.3
2,175,912 - Dsui_2056 0.58 +0.2
2,175,959 - Dsui_2056 0.67 -0.0
2,175,973 + -0.0
2,175,984 + Dsui_2056 0.71 -0.0
2,176,051 + Dsui_2056 0.83 -1.0
2,176,071 - Dsui_2056 0.87 +0.3
2,176,071 - Dsui_2056 0.87 +0.6
2,176,105 - -0.9
2,176,105 - -0.9
2,176,119 - +0.7
2,176,138 + -0.0
2,176,185 - +0.4
2,176,199 + -0.3
2,176,199 + +0.2
2,176,214 - +1.0
2,176,217 - -0.6
2,176,219 - +0.7
2,176,219 - +1.0
2,176,278 + +0.5
2,176,363 + -0.0
2,176,667 + +1.3
2,176,807 + Dsui_2057 0.23 +0.5
2,176,891 - Dsui_2057 0.35 -0.0
2,176,970 + Dsui_2057 0.46 +1.1
2,176,978 - Dsui_2057 0.47 +0.7
2,177,188 + -0.0
2,177,196 - Dsui_2057 0.78 +0.4
2,177,196 - Dsui_2057 0.78 -0.0
2,177,231 - Dsui_2057 0.83 -0.0
2,177,299 + +1.8
2,177,483 - Dsui_2058 0.16 +1.3
2,177,519 - Dsui_2058 0.21 +0.2
2,177,700 - Dsui_2058 0.44 +0.1
2,177,905 + Dsui_2058 0.70 +0.4
2,178,017 - Dsui_2058 0.85 -0.6
2,178,144 - +2.4
2,178,146 + -0.0
2,178,200 + +1.5
2,178,299 - Dsui_2059 0.19 -1.9
2,178,299 - Dsui_2059 0.19 -1.0
2,178,334 + Dsui_2059 0.23 +2.0

Or see this region's nucleotide sequence