Strain Fitness in Dechlorosoma suillum PS around Dsui_1421

Experiment: anaerobic ALP with 3 all (C)s and 5mM perchlorate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1418 and Dsui_1419 are separated by 7 nucleotidesDsui_1419 and Dsui_1420 overlap by 4 nucleotidesDsui_1420 and Dsui_1421 are separated by 39 nucleotidesDsui_1421 and Dsui_1422 are separated by 1 nucleotidesDsui_1422 and Dsui_1423 are separated by 78 nucleotidesDsui_1423 and Dsui_1424 are separated by 8 nucleotides Dsui_1418: Dsui_1418 - imidazoleglycerol phosphate synthase, cyclase subunit, at 1,473,875 to 1,474,636 _1418 Dsui_1419: Dsui_1419 - phosphoribosyl-AMP cyclohydrolase, at 1,474,644 to 1,475,051 _1419 Dsui_1420: Dsui_1420 - phosphoribosyl-ATP pyrophosphohydrolase, at 1,475,048 to 1,475,371 _1420 Dsui_1421: Dsui_1421 - HIT family hydrolase, diadenosine tetraphosphate hydrolase, at 1,475,411 to 1,475,770 _1421 Dsui_1422: Dsui_1422 - twin arginine-targeting protein translocase, TatA/E family, at 1,475,772 to 1,475,996 _1422 Dsui_1423: Dsui_1423 - twin arginine-targeting protein translocase TatB, at 1,476,075 to 1,476,458 _1423 Dsui_1424: Dsui_1424 - twin arginine targeting protein translocase subunit TatC, at 1,476,467 to 1,477,342 _1424 Position (kb) 1475 1476Strain fitness (log2 ratio) -3 -2 -1 0 1at 1475.406 kb on - strandat 1475.416 kb on - strandat 1475.416 kb on - strandat 1475.463 kb on + strand, within Dsui_1421at 1475.465 kb on + strand, within Dsui_1421at 1475.465 kb on + strand, within Dsui_1421at 1475.465 kb on + strand, within Dsui_1421at 1475.465 kb on + strand, within Dsui_1421at 1475.473 kb on - strand, within Dsui_1421at 1475.473 kb on - strand, within Dsui_1421at 1475.630 kb on + strand, within Dsui_1421at 1475.990 kb on + strandat 1475.990 kb on + strandat 1475.998 kb on - strandat 1475.998 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction anaerobic ALP with 3 all (C)s and 5mM perchlorate
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1,475,406 - -3.1
1,475,416 - -0.1
1,475,416 - -0.1
1,475,463 + Dsui_1421 0.14 -0.7
1,475,465 + Dsui_1421 0.15 -0.9
1,475,465 + Dsui_1421 0.15 -1.8
1,475,465 + Dsui_1421 0.15 -1.4
1,475,465 + Dsui_1421 0.15 -1.3
1,475,473 - Dsui_1421 0.17 -2.9
1,475,473 - Dsui_1421 0.17 -1.1
1,475,630 + Dsui_1421 0.61 +0.3
1,475,990 + -0.7
1,475,990 + -0.2
1,475,998 - -0.7
1,475,998 - -1.1

Or see this region's nucleotide sequence