Strain Fitness in Dechlorosoma suillum PS around Dsui_1400

Experiment: anaerobic ALP with 3 all (C)s and 5mM perchlorate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1398 and Dsui_1399 overlap by 8 nucleotidesDsui_1399 and Dsui_1400 overlap by 1 nucleotidesDsui_1400 and Dsui_1401 are separated by 83 nucleotidesDsui_1401 and Dsui_1402 are separated by 97 nucleotides Dsui_1398: Dsui_1398 - ABC-type transport system involved in resistance to organic solvents, ATPase component, at 1,458,929 to 1,459,750 _1398 Dsui_1399: Dsui_1399 - conserved hypothetical integral membrane protein, at 1,459,743 to 1,460,525 _1399 Dsui_1400: Dsui_1400 - ABC-type transport system involved in resistance to organic solvents, periplasmic component, at 1,460,525 to 1,460,995 _1400 Dsui_1401: Dsui_1401 - surface lipoprotein, at 1,461,079 to 1,461,798 _1401 Dsui_1402: Dsui_1402 - ABC-type transport system involved in resistance to organic solvents, auxiliary component, at 1,461,896 to 1,462,525 _1402 Position (kb) 1460 1461Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1459.562 kb on - strandat 1459.638 kb on + strand, within Dsui_1398at 1459.729 kb on + strandat 1459.730 kb on - strandat 1459.737 kb on - strandat 1459.737 kb on - strandat 1459.837 kb on + strand, within Dsui_1399at 1459.855 kb on - strandat 1459.856 kb on - strandat 1459.864 kb on + strand, within Dsui_1399at 1459.896 kb on + strand, within Dsui_1399at 1459.961 kb on - strandat 1460.072 kb on + strand, within Dsui_1399at 1460.123 kb on + strand, within Dsui_1399at 1460.123 kb on + strand, within Dsui_1399at 1460.131 kb on - strand, within Dsui_1399at 1460.199 kb on + strand, within Dsui_1399at 1460.217 kb on + strand, within Dsui_1399at 1460.229 kb on + strand, within Dsui_1399at 1460.255 kb on + strand, within Dsui_1399at 1460.450 kb on + strandat 1460.471 kb on + strandat 1460.486 kb on + strandat 1460.496 kb on - strandat 1460.529 kb on + strandat 1460.529 kb on + strandat 1460.529 kb on + strandat 1460.590 kb on - strand, within Dsui_1400at 1460.684 kb on - strand, within Dsui_1400at 1460.747 kb on + strand, within Dsui_1400at 1460.780 kb on + strand, within Dsui_1400at 1460.837 kb on - strand, within Dsui_1400at 1460.856 kb on - strand, within Dsui_1400at 1460.859 kb on + strand, within Dsui_1400at 1460.863 kb on + strand, within Dsui_1400at 1460.867 kb on - strand, within Dsui_1400at 1460.949 kb on + strandat 1460.986 kb on - strandat 1461.062 kb on - strandat 1461.095 kb on - strandat 1461.099 kb on + strandat 1461.120 kb on + strandat 1461.120 kb on + strandat 1461.150 kb on - strandat 1461.190 kb on + strand, within Dsui_1401at 1461.191 kb on - strand, within Dsui_1401at 1461.228 kb on + strand, within Dsui_1401at 1461.240 kb on + strand, within Dsui_1401at 1461.284 kb on - strandat 1461.291 kb on + strand, within Dsui_1401at 1461.637 kb on - strandat 1461.879 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction anaerobic ALP with 3 all (C)s and 5mM perchlorate
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1,459,562 - -1.7
1,459,638 + Dsui_1398 0.86 -1.7
1,459,729 + +1.0
1,459,730 - -1.1
1,459,737 - -1.1
1,459,737 - -1.1
1,459,837 + Dsui_1399 0.12 -1.7
1,459,855 - -0.1
1,459,856 - -0.1
1,459,864 + Dsui_1399 0.15 -1.1
1,459,896 + Dsui_1399 0.20 -1.4
1,459,961 - -0.1
1,460,072 + Dsui_1399 0.42 -0.1
1,460,123 + Dsui_1399 0.49 -2.1
1,460,123 + Dsui_1399 0.49 -0.1
1,460,131 - Dsui_1399 0.50 -0.1
1,460,199 + Dsui_1399 0.58 -0.1
1,460,217 + Dsui_1399 0.61 -1.7
1,460,229 + Dsui_1399 0.62 -1.7
1,460,255 + Dsui_1399 0.65 -2.7
1,460,450 + -1.7
1,460,471 + +0.9
1,460,486 + -3.5
1,460,496 - -0.1
1,460,529 + -2.4
1,460,529 + -0.7
1,460,529 + -1.7
1,460,590 - Dsui_1400 0.14 -2.1
1,460,684 - Dsui_1400 0.34 -0.1
1,460,747 + Dsui_1400 0.47 -2.4
1,460,780 + Dsui_1400 0.54 -1.1
1,460,837 - Dsui_1400 0.66 -1.1
1,460,856 - Dsui_1400 0.70 -1.1
1,460,859 + Dsui_1400 0.71 -2.9
1,460,863 + Dsui_1400 0.72 -3.8
1,460,867 - Dsui_1400 0.73 -1.7
1,460,949 + -3.2
1,460,986 - +0.9
1,461,062 - -2.7
1,461,095 - -1.1
1,461,099 + -2.3
1,461,120 + -2.9
1,461,120 + -0.1
1,461,150 - -1.1
1,461,190 + Dsui_1401 0.15 -2.7
1,461,191 - Dsui_1401 0.16 -1.1
1,461,228 + Dsui_1401 0.21 -1.1
1,461,240 + Dsui_1401 0.22 -2.1
1,461,284 - -0.1
1,461,291 + Dsui_1401 0.29 -3.2
1,461,637 - -0.1
1,461,879 + -1.4

Or see this region's nucleotide sequence