Strain Fitness in Dechlorosoma suillum PS around Dsui_1376

Experiment: anaerobic ALP with 3 all (C)s and 5mM perchlorate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1374 and Dsui_1375 are separated by 36 nucleotidesDsui_1375 and Dsui_1376 are separated by 131 nucleotidesDsui_1376 and Dsui_1377 are separated by 218 nucleotides Dsui_1374: Dsui_1374 - Protein of unknown function (DUF540), at 1,431,207 to 1,431,974 _1374 Dsui_1375: Dsui_1375 - putative nuleotide-utilizing enzyme, moeA, at 1,432,011 to 1,432,799 _1375 Dsui_1376: Dsui_1376 - phasin family protein, at 1,432,931 to 1,433,488 _1376 Dsui_1377: Dsui_1377 - phasin family protein, at 1,433,707 to 1,434,282 _1377 Position (kb) 1432 1433 1434Strain fitness (log2 ratio) -3 -2 -1 0 1at 1431.955 kb on + strandat 1432.008 kb on + strandat 1432.015 kb on - strandat 1432.035 kb on + strandat 1432.148 kb on - strandat 1432.388 kb on - strand, within Dsui_1375at 1432.424 kb on + strand, within Dsui_1375at 1432.430 kb on - strand, within Dsui_1375at 1432.448 kb on + strand, within Dsui_1375at 1432.503 kb on - strand, within Dsui_1375at 1432.517 kb on - strand, within Dsui_1375at 1432.636 kb on + strand, within Dsui_1375at 1432.823 kb on + strandat 1432.900 kb on - strandat 1433.089 kb on - strand, within Dsui_1376at 1433.164 kb on + strand, within Dsui_1376at 1433.245 kb on - strand, within Dsui_1376at 1433.252 kb on - strand, within Dsui_1376at 1433.269 kb on + strand, within Dsui_1376at 1433.278 kb on - strand, within Dsui_1376at 1433.285 kb on - strand, within Dsui_1376at 1433.323 kb on + strand, within Dsui_1376at 1433.410 kb on - strand, within Dsui_1376at 1433.412 kb on + strand, within Dsui_1376at 1433.412 kb on + strand, within Dsui_1376at 1433.419 kb on - strand, within Dsui_1376at 1433.419 kb on - strand, within Dsui_1376at 1433.420 kb on - strand, within Dsui_1376at 1433.457 kb on + strandat 1433.457 kb on + strandat 1433.457 kb on + strandat 1433.465 kb on - strandat 1433.465 kb on - strandat 1433.465 kb on - strandat 1433.465 kb on - strandat 1433.495 kb on + strandat 1433.507 kb on + strandat 1433.522 kb on - strandat 1433.531 kb on - strandat 1433.531 kb on - strandat 1433.570 kb on + strandat 1433.570 kb on + strandat 1433.621 kb on - strandat 1433.621 kb on - strandat 1433.648 kb on + strandat 1433.704 kb on + strandat 1433.814 kb on + strand, within Dsui_1377at 1434.050 kb on + strand, within Dsui_1377at 1434.058 kb on - strand, within Dsui_1377at 1434.070 kb on + strandat 1434.116 kb on + strandat 1434.124 kb on - strand, within Dsui_1377at 1434.258 kb on + strandat 1434.266 kb on - strandat 1434.285 kb on - strandat 1434.299 kb on - strandat 1434.299 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction anaerobic ALP with 3 all (C)s and 5mM perchlorate
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1,431,955 + -0.1
1,432,008 + +0.5
1,432,015 - -0.1
1,432,035 + -1.1
1,432,148 - +0.4
1,432,388 - Dsui_1375 0.48 +0.8
1,432,424 + Dsui_1375 0.52 +1.3
1,432,430 - Dsui_1375 0.53 +0.3
1,432,448 + Dsui_1375 0.55 +0.1
1,432,503 - Dsui_1375 0.62 +0.5
1,432,517 - Dsui_1375 0.64 +0.3
1,432,636 + Dsui_1375 0.79 -0.1
1,432,823 + +0.2
1,432,900 - +1.3
1,433,089 - Dsui_1376 0.28 -0.8
1,433,164 + Dsui_1376 0.42 -1.1
1,433,245 - Dsui_1376 0.56 +0.2
1,433,252 - Dsui_1376 0.58 +0.4
1,433,269 + Dsui_1376 0.61 +1.2
1,433,278 - Dsui_1376 0.62 -0.1
1,433,285 - Dsui_1376 0.63 -0.1
1,433,323 + Dsui_1376 0.70 +0.7
1,433,410 - Dsui_1376 0.86 +0.2
1,433,412 + Dsui_1376 0.86 +0.3
1,433,412 + Dsui_1376 0.86 -1.1
1,433,419 - Dsui_1376 0.87 +0.6
1,433,419 - Dsui_1376 0.87 -0.1
1,433,420 - Dsui_1376 0.88 +0.0
1,433,457 + +0.4
1,433,457 + +0.1
1,433,457 + +0.5
1,433,465 - +0.1
1,433,465 - +0.2
1,433,465 - -0.2
1,433,465 - -0.1
1,433,495 + +0.1
1,433,507 + +0.9
1,433,522 - +0.0
1,433,531 - +0.5
1,433,531 - -0.4
1,433,570 + +0.6
1,433,570 + -0.5
1,433,621 - +0.2
1,433,621 - -1.1
1,433,648 + +0.1
1,433,704 + -0.6
1,433,814 + Dsui_1377 0.19 -1.1
1,434,050 + Dsui_1377 0.60 -2.9
1,434,058 - Dsui_1377 0.61 -2.6
1,434,070 + -1.6
1,434,116 + -2.9
1,434,124 - Dsui_1377 0.72 -2.5
1,434,258 + -2.6
1,434,266 - -2.6
1,434,285 - -2.4
1,434,299 - -2.2
1,434,299 - -1.6

Or see this region's nucleotide sequence