Strain Fitness in Dechlorosoma suillum PS around Dsui_1106

Experiment: anaerobic ALP with 3 all (C)s and 5mM perchlorate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1105 and Dsui_1106 are separated by 357 nucleotidesDsui_1106 and Dsui_1107 are separated by 38 nucleotidesDsui_1107 and Dsui_1108 are separated by 254 nucleotides Dsui_1105: Dsui_1105 - methylmalonyl-CoA mutase family protein, at 1,148,651 to 1,151,932 _1105 Dsui_1106: Dsui_1106 - nitroreductase, at 1,152,290 to 1,152,982 _1106 Dsui_1107: Dsui_1107 - cAMP-binding protein, at 1,153,021 to 1,153,695 _1107 Dsui_1108: Dsui_1108 - AMP-forming long-chain acyl-CoA synthetase, at 1,153,950 to 1,155,929 _1108 Position (kb) 1152 1153Strain fitness (log2 ratio) -2 -1 0 1at 1151.442 kb on - strand, within Dsui_1105at 1151.484 kb on + strand, within Dsui_1105at 1151.584 kb on - strand, within Dsui_1105at 1151.611 kb on - strandat 1151.700 kb on - strandat 1151.724 kb on + strandat 1151.856 kb on - strandat 1151.871 kb on + strandat 1151.879 kb on - strandat 1151.910 kb on + strandat 1152.030 kb on + strandat 1152.032 kb on - strandat 1152.043 kb on - strandat 1152.058 kb on + strandat 1152.142 kb on + strandat 1152.173 kb on - strandat 1152.179 kb on - strandat 1152.212 kb on + strandat 1152.371 kb on + strand, within Dsui_1106at 1152.371 kb on + strandat 1152.376 kb on + strand, within Dsui_1106at 1152.379 kb on - strand, within Dsui_1106at 1152.379 kb on - strand, within Dsui_1106at 1152.379 kb on - strand, within Dsui_1106at 1152.379 kb on - strand, within Dsui_1106at 1152.496 kb on + strand, within Dsui_1106at 1152.496 kb on + strand, within Dsui_1106at 1152.566 kb on + strand, within Dsui_1106at 1152.754 kb on + strand, within Dsui_1106at 1152.838 kb on + strand, within Dsui_1106at 1152.883 kb on + strand, within Dsui_1106at 1153.088 kb on + strandat 1153.122 kb on - strand, within Dsui_1107at 1153.234 kb on + strand, within Dsui_1107at 1153.290 kb on + strand, within Dsui_1107at 1153.335 kb on - strand, within Dsui_1107at 1153.553 kb on + strand, within Dsui_1107at 1153.674 kb on - strandat 1153.803 kb on + strandat 1153.807 kb on - strandat 1153.807 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction anaerobic ALP with 3 all (C)s and 5mM perchlorate
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1,151,442 - Dsui_1105 0.85 +0.5
1,151,484 + Dsui_1105 0.86 +0.5
1,151,584 - Dsui_1105 0.89 -0.0
1,151,611 - +1.1
1,151,700 - -0.0
1,151,724 + +0.1
1,151,856 - +0.4
1,151,871 + -0.0
1,151,879 - -0.0
1,151,910 + +0.2
1,152,030 + +0.4
1,152,032 - +0.4
1,152,043 - +0.5
1,152,058 + -0.6
1,152,142 + -0.4
1,152,173 - +0.4
1,152,179 - +0.9
1,152,212 + -0.0
1,152,371 + Dsui_1106 0.12 -1.7
1,152,371 + +0.7
1,152,376 + Dsui_1106 0.12 -0.0
1,152,379 - Dsui_1106 0.13 -0.5
1,152,379 - Dsui_1106 0.13 -0.0
1,152,379 - Dsui_1106 0.13 -0.2
1,152,379 - Dsui_1106 0.13 +0.7
1,152,496 + Dsui_1106 0.30 +0.5
1,152,496 + Dsui_1106 0.30 -1.6
1,152,566 + Dsui_1106 0.40 -0.4
1,152,754 + Dsui_1106 0.67 -0.0
1,152,838 + Dsui_1106 0.79 -1.6
1,152,883 + Dsui_1106 0.86 +0.7
1,153,088 + -0.0
1,153,122 - Dsui_1107 0.15 -0.0
1,153,234 + Dsui_1107 0.32 +0.4
1,153,290 + Dsui_1107 0.40 -0.3
1,153,335 - Dsui_1107 0.47 -1.6
1,153,553 + Dsui_1107 0.79 -2.0
1,153,674 - -0.5
1,153,803 + +0.5
1,153,807 - -0.6
1,153,807 - -0.3

Or see this region's nucleotide sequence