Experiment: anaerobic ALP with 3 all (C)s and 5mM perchlorate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0463 and Dsui_0464 are separated by 6 nucleotides Dsui_0464 and Dsui_0465 overlap by 14 nucleotides Dsui_0465 and Dsui_0466 overlap by 26 nucleotides
Dsui_0463: Dsui_0463 - hypothetical protein, at 468,986 to 470,323
_0463
Dsui_0464: Dsui_0464 - hypothetical protein, at 470,330 to 471,286
_0464
Dsui_0465: Dsui_0465 - ADP-heptose:LPS heptosyltransferase, at 471,273 to 472,451
_0465
Dsui_0466: Dsui_0466 - glycosyltransferase, at 472,426 to 473,532
_0466
Position (kb) 471
472
473 Strain fitness (log2 ratio) -1
0
1
2 at 470.275 kb on - strand at 470.366 kb on + strand at 470.446 kb on - strand, within Dsui_0464 at 470.679 kb on + strand, within Dsui_0464 at 470.707 kb on - strand, within Dsui_0464 at 470.757 kb on + strand at 470.758 kb on - strand, within Dsui_0464 at 470.818 kb on - strand, within Dsui_0464 at 470.893 kb on + strand, within Dsui_0464 at 470.918 kb on + strand, within Dsui_0464 at 470.973 kb on - strand, within Dsui_0464 at 471.108 kb on - strand, within Dsui_0464 at 471.157 kb on + strand at 471.168 kb on - strand, within Dsui_0464 at 471.236 kb on - strand at 471.271 kb on + strand at 471.439 kb on + strand at 471.683 kb on - strand, within Dsui_0465 at 471.761 kb on - strand, within Dsui_0465 at 471.786 kb on - strand, within Dsui_0465 at 472.212 kb on - strand, within Dsui_0465
Per-strain Table
Position Strand Gene LocusTag Fraction anaerobic ALP with 3 all (C)s and 5mM perchlorate remove 470,275 - -1.0 470,366 + +1.8 470,446 - Dsui_0464 0.12 +0.9 470,679 + Dsui_0464 0.36 -1.0 470,707 - Dsui_0464 0.39 +1.1 470,757 + -0.0 470,758 - Dsui_0464 0.45 +1.0 470,818 - Dsui_0464 0.51 +1.3 470,893 + Dsui_0464 0.59 +1.6 470,918 + Dsui_0464 0.61 -0.0 470,973 - Dsui_0464 0.67 -0.0 471,108 - Dsui_0464 0.81 -0.0 471,157 + +1.6 471,168 - Dsui_0464 0.88 +0.6 471,236 - +0.2 471,271 + +1.6 471,439 + -0.0 471,683 - Dsui_0465 0.35 -1.0 471,761 - Dsui_0465 0.41 -1.0 471,786 - Dsui_0465 0.44 -1.6 472,212 - Dsui_0465 0.80 +1.0
Or see this region's nucleotide sequence