Experiment: PYE 0.5x 4C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03927 and CCNA_03928 are separated by 41 nucleotides CCNA_03928 and CCNA_00716 are separated by 63 nucleotides CCNA_00716 and CCNA_03929 are separated by 153 nucleotides CCNA_03929 and CCNA_00718 are separated by 52 nucleotides CCNA_00718 and CCNA_03930 are separated by 6 nucleotides CCNA_03930 and CCNA_03931 are separated by 542 nucleotides CCNA_03931 and CCNA_03932 are separated by 2 nucleotides
CCNA_03927: CCNA_03927 - hypothetical protein, at 770,798 to 771,094
_03927
CCNA_03928: CCNA_03928 - hypothetical protein, at 771,136 to 771,327
_03928
CCNA_00716: CCNA_00716 - hypothetical protein, at 771,391 to 771,567
_00716
CCNA_03929: CCNA_03929 - hypothetical protein, at 771,721 to 771,834
_03929
CCNA_00718: CCNA_00718 - abortive infection protein, at 771,887 to 772,783
_00718
CCNA_03930: CCNA_03930 - hypothetical protein, at 772,790 to 772,894
_03930
CCNA_03931: CCNA_03931 - hypothetical protein, at 773,437 to 773,730
_03931
CCNA_03932: CCNA_03932 - hypothetical protein, at 773,733 to 773,987
_03932
Position (kb) 771
772
773 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 770.993 kb on - strand, within CCNA_03927 at 771.000 kb on - strand, within CCNA_03927 at 771.024 kb on - strand, within CCNA_03927 at 771.031 kb on - strand, within CCNA_03927 at 771.033 kb on + strand, within CCNA_03927 at 771.041 kb on - strand, within CCNA_03927 at 771.109 kb on + strand at 771.109 kb on + strand at 771.114 kb on + strand at 771.133 kb on + strand at 771.133 kb on + strand at 771.135 kb on + strand at 771.135 kb on + strand at 771.143 kb on - strand at 771.176 kb on + strand, within CCNA_03928 at 771.181 kb on + strand, within CCNA_03928 at 771.184 kb on - strand, within CCNA_03928 at 771.189 kb on - strand, within CCNA_03928 at 771.194 kb on + strand, within CCNA_03928 at 771.213 kb on - strand, within CCNA_03928 at 771.213 kb on - strand, within CCNA_03928 at 771.213 kb on - strand, within CCNA_03928 at 771.232 kb on - strand, within CCNA_03928 at 771.232 kb on - strand, within CCNA_03928 at 771.232 kb on - strand, within CCNA_03928 at 771.232 kb on - strand, within CCNA_03928 at 771.239 kb on + strand, within CCNA_03928 at 771.259 kb on + strand, within CCNA_03928 at 771.260 kb on + strand, within CCNA_03928 at 771.260 kb on + strand, within CCNA_03928 at 771.273 kb on - strand, within CCNA_03928 at 771.277 kb on - strand, within CCNA_03928 at 771.277 kb on - strand, within CCNA_03928 at 771.277 kb on - strand, within CCNA_03928 at 771.306 kb on + strand, within CCNA_03928 at 771.316 kb on + strand at 771.336 kb on + strand at 771.344 kb on - strand at 771.344 kb on - strand at 771.373 kb on + strand at 771.378 kb on + strand at 771.378 kb on + strand at 771.381 kb on - strand at 771.381 kb on - strand at 771.386 kb on - strand at 771.396 kb on - strand at 771.397 kb on - strand at 771.406 kb on - strand at 771.406 kb on - strand at 771.427 kb on + strand, within CCNA_00716 at 771.428 kb on + strand, within CCNA_00716 at 771.431 kb on - strand, within CCNA_00716 at 771.448 kb on - strand, within CCNA_00716 at 771.449 kb on + strand, within CCNA_00716 at 771.449 kb on + strand, within CCNA_00716 at 771.457 kb on - strand, within CCNA_00716 at 771.457 kb on - strand, within CCNA_00716 at 771.475 kb on + strand, within CCNA_00716 at 771.475 kb on + strand, within CCNA_00716 at 771.540 kb on - strand, within CCNA_00716 at 771.560 kb on - strand at 771.564 kb on + strand at 771.653 kb on + strand at 771.653 kb on + strand at 771.653 kb on + strand at 771.653 kb on + strand at 771.661 kb on - strand at 771.682 kb on + strand at 771.683 kb on + strand at 771.696 kb on - strand at 771.696 kb on - strand at 771.719 kb on + strand at 771.719 kb on + strand at 771.719 kb on + strand at 771.727 kb on - strand at 771.727 kb on - strand at 771.727 kb on - strand at 771.727 kb on - strand at 771.732 kb on - strand at 771.773 kb on - strand, within CCNA_03929 at 771.806 kb on + strand, within CCNA_03929 at 771.810 kb on - strand, within CCNA_03929 at 771.840 kb on - strand at 771.852 kb on + strand at 771.869 kb on - strand at 771.875 kb on + strand at 771.886 kb on + strand at 771.893 kb on - strand at 771.893 kb on - strand at 771.901 kb on - strand at 771.913 kb on + strand at 771.921 kb on - strand at 771.940 kb on - strand at 771.962 kb on - strand at 771.962 kb on - strand at 771.963 kb on - strand at 771.976 kb on + strand at 771.984 kb on - strand, within CCNA_00718 at 771.984 kb on - strand, within CCNA_00718 at 771.984 kb on - strand, within CCNA_00718 at 772.005 kb on + strand, within CCNA_00718 at 772.005 kb on + strand, within CCNA_00718 at 772.005 kb on + strand, within CCNA_00718 at 772.005 kb on + strand, within CCNA_00718 at 772.005 kb on + strand, within CCNA_00718 at 772.005 kb on + strand, within CCNA_00718 at 772.007 kb on + strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.013 kb on - strand, within CCNA_00718 at 772.020 kb on - strand, within CCNA_00718 at 772.066 kb on + strand, within CCNA_00718 at 772.100 kb on + strand, within CCNA_00718 at 772.107 kb on - strand, within CCNA_00718 at 772.115 kb on + strand, within CCNA_00718 at 772.130 kb on + strand, within CCNA_00718 at 772.130 kb on + strand, within CCNA_00718 at 772.130 kb on + strand, within CCNA_00718 at 772.130 kb on + strand, within CCNA_00718 at 772.169 kb on - strand, within CCNA_00718 at 772.212 kb on + strand, within CCNA_00718 at 772.218 kb on - strand, within CCNA_00718 at 772.218 kb on - strand, within CCNA_00718 at 772.218 kb on - strand, within CCNA_00718 at 772.229 kb on + strand, within CCNA_00718 at 772.285 kb on + strand, within CCNA_00718 at 772.341 kb on - strand, within CCNA_00718 at 772.355 kb on - strand, within CCNA_00718 at 772.355 kb on - strand, within CCNA_00718 at 772.356 kb on + strand, within CCNA_00718 at 772.358 kb on + strand, within CCNA_00718 at 772.366 kb on + strand, within CCNA_00718 at 772.389 kb on - strand, within CCNA_00718 at 772.389 kb on - strand, within CCNA_00718 at 772.389 kb on - strand, within CCNA_00718 at 772.390 kb on - strand, within CCNA_00718 at 772.432 kb on - strand, within CCNA_00718 at 772.432 kb on - strand, within CCNA_00718 at 772.432 kb on - strand, within CCNA_00718 at 772.447 kb on + strand, within CCNA_00718 at 772.447 kb on + strand, within CCNA_00718 at 772.455 kb on - strand, within CCNA_00718 at 772.468 kb on + strand, within CCNA_00718 at 772.468 kb on + strand, within CCNA_00718 at 772.468 kb on + strand, within CCNA_00718 at 772.468 kb on + strand, within CCNA_00718 at 772.468 kb on + strand, within CCNA_00718 at 772.468 kb on + strand, within CCNA_00718 at 772.468 kb on + strand, within CCNA_00718 at 772.471 kb on - strand, within CCNA_00718 at 772.476 kb on - strand, within CCNA_00718 at 772.476 kb on - strand, within CCNA_00718 at 772.476 kb on - strand, within CCNA_00718 at 772.476 kb on - strand, within CCNA_00718 at 772.476 kb on - strand, within CCNA_00718 at 772.476 kb on - strand, within CCNA_00718 at 772.476 kb on - strand, within CCNA_00718 at 772.476 kb on - strand, within CCNA_00718 at 772.565 kb on + strand, within CCNA_00718 at 772.631 kb on + strand, within CCNA_00718 at 772.639 kb on - strand, within CCNA_00718 at 772.646 kb on - strand, within CCNA_00718 at 772.646 kb on - strand at 772.690 kb on + strand, within CCNA_00718 at 772.698 kb on - strand at 772.698 kb on - strand at 772.711 kb on - strand at 772.711 kb on - strand at 772.747 kb on + strand at 772.752 kb on + strand at 772.795 kb on - strand at 772.795 kb on - strand at 772.795 kb on - strand at 772.795 kb on - strand at 772.808 kb on - strand, within CCNA_03930 at 772.812 kb on + strand, within CCNA_03930 at 772.842 kb on + strand, within CCNA_03930 at 772.847 kb on + strand, within CCNA_03930 at 772.850 kb on - strand, within CCNA_03930 at 772.852 kb on + strand at 772.860 kb on - strand, within CCNA_03930 at 772.860 kb on - strand, within CCNA_03930 at 772.866 kb on + strand, within CCNA_03930 at 772.869 kb on - strand, within CCNA_03930 at 772.874 kb on - strand, within CCNA_03930 at 772.874 kb on - strand, within CCNA_03930 at 772.897 kb on - strand at 772.956 kb on + strand at 772.956 kb on + strand at 772.964 kb on - strand at 772.969 kb on + strand at 772.985 kb on + strand at 772.985 kb on + strand at 772.991 kb on + strand at 772.991 kb on + strand at 772.991 kb on + strand at 772.999 kb on - strand at 772.999 kb on - strand at 772.999 kb on - strand at 772.999 kb on - strand at 773.010 kb on - strand at 773.030 kb on - strand at 773.076 kb on - strand at 773.080 kb on + strand at 773.094 kb on + strand at 773.095 kb on - strand at 773.101 kb on - strand at 773.102 kb on - strand at 773.102 kb on - strand at 773.102 kb on - strand at 773.118 kb on - strand at 773.120 kb on + strand at 773.126 kb on - strand at 773.126 kb on - strand at 773.128 kb on - strand at 773.161 kb on + strand at 773.184 kb on - strand at 773.192 kb on + strand at 773.193 kb on + strand at 773.193 kb on + strand at 773.202 kb on - strand at 773.202 kb on - strand at 773.213 kb on + strand at 773.213 kb on + strand at 773.221 kb on - strand at 773.221 kb on - strand at 773.248 kb on + strand at 773.248 kb on + strand at 773.248 kb on + strand at 773.248 kb on + strand at 773.249 kb on + strand at 773.249 kb on + strand at 773.249 kb on + strand at 773.249 kb on + strand at 773.249 kb on + strand at 773.256 kb on - strand at 773.256 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.257 kb on - strand at 773.268 kb on - strand at 773.269 kb on - strand at 773.270 kb on + strand at 773.270 kb on + strand at 773.271 kb on + strand at 773.278 kb on - strand at 773.279 kb on - strand at 773.279 kb on - strand at 773.309 kb on - strand at 773.309 kb on - strand at 773.309 kb on - strand at 773.732 kb on + strand at 773.732 kb on + strand at 773.740 kb on - strand at 773.740 kb on - strand at 773.740 kb on - strand at 773.742 kb on + strand at 773.749 kb on + strand at 773.767 kb on - strand, within CCNA_03932
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 0.5x 4C remove 770,993 - CCNA_03927 0.66 -3.1 771,000 - CCNA_03927 0.68 -1.2 771,024 - CCNA_03927 0.76 -0.3 771,031 - CCNA_03927 0.78 +0.4 771,033 + CCNA_03927 0.79 -2.0 771,041 - CCNA_03927 0.82 -1.8 771,109 + -1.1 771,109 + +0.4 771,114 + +0.4 771,133 + -0.3 771,133 + -1.5 771,135 + +0.1 771,135 + -1.2 771,143 - +0.2 771,176 + CCNA_03928 0.21 -1.0 771,181 + CCNA_03928 0.23 +0.4 771,184 - CCNA_03928 0.25 +0.9 771,189 - CCNA_03928 0.28 -2.4 771,194 + CCNA_03928 0.30 -0.5 771,213 - CCNA_03928 0.40 -0.2 771,213 - CCNA_03928 0.40 -0.6 771,213 - CCNA_03928 0.40 +0.3 771,232 - CCNA_03928 0.50 +1.9 771,232 - CCNA_03928 0.50 -0.5 771,232 - CCNA_03928 0.50 -0.8 771,232 - CCNA_03928 0.50 +2.0 771,239 + CCNA_03928 0.54 -3.1 771,259 + CCNA_03928 0.64 +1.3 771,260 + CCNA_03928 0.65 -0.2 771,260 + CCNA_03928 0.65 -1.5 771,273 - CCNA_03928 0.71 +0.2 771,277 - CCNA_03928 0.73 -0.3 771,277 - CCNA_03928 0.73 +0.5 771,277 - CCNA_03928 0.73 +0.8 771,306 + CCNA_03928 0.89 +0.8 771,316 + +0.7 771,336 + +0.5 771,344 - +1.5 771,344 - +1.2 771,373 + -0.0 771,378 + -0.6 771,378 + -1.2 771,381 - +0.1 771,381 - +1.8 771,386 - +0.1 771,396 - +0.9 771,397 - -2.2 771,406 - +0.4 771,406 - +1.1 771,427 + CCNA_00716 0.20 -0.7 771,428 + CCNA_00716 0.21 -2.7 771,431 - CCNA_00716 0.23 +0.6 771,448 - CCNA_00716 0.32 +0.7 771,449 + CCNA_00716 0.33 -0.2 771,449 + CCNA_00716 0.33 +1.0 771,457 - CCNA_00716 0.37 -3.4 771,457 - CCNA_00716 0.37 -1.6 771,475 + CCNA_00716 0.47 -1.3 771,475 + CCNA_00716 0.47 +0.5 771,540 - CCNA_00716 0.84 +0.3 771,560 - +0.1 771,564 + +0.7 771,653 + -0.6 771,653 + +0.1 771,653 + -0.1 771,653 + +0.8 771,661 - -2.1 771,682 + -0.4 771,683 + +1.6 771,696 - +0.2 771,696 - +1.0 771,719 + -0.3 771,719 + -1.2 771,719 + +0.7 771,727 - -0.7 771,727 - +0.4 771,727 - -3.1 771,727 - +0.5 771,732 - +0.7 771,773 - CCNA_03929 0.46 +0.8 771,806 + CCNA_03929 0.75 +0.9 771,810 - CCNA_03929 0.78 +1.3 771,840 - -1.9 771,852 + -1.0 771,869 - +1.7 771,875 + +1.2 771,886 + +0.2 771,893 - +1.1 771,893 - +0.2 771,901 - -1.8 771,913 + +2.1 771,921 - -0.3 771,940 - -0.4 771,962 - -1.1 771,962 - +0.9 771,963 - -1.0 771,976 + -0.0 771,984 - CCNA_00718 0.11 +1.4 771,984 - CCNA_00718 0.11 +0.9 771,984 - CCNA_00718 0.11 -0.3 772,005 + CCNA_00718 0.13 -0.2 772,005 + CCNA_00718 0.13 -1.3 772,005 + CCNA_00718 0.13 +3.0 772,005 + CCNA_00718 0.13 -1.2 772,005 + CCNA_00718 0.13 -0.6 772,005 + CCNA_00718 0.13 -0.6 772,007 + CCNA_00718 0.13 +0.4 772,013 - CCNA_00718 0.14 +0.6 772,013 - CCNA_00718 0.14 +1.1 772,013 - CCNA_00718 0.14 +0.0 772,013 - CCNA_00718 0.14 +0.2 772,013 - CCNA_00718 0.14 -0.2 772,013 - CCNA_00718 0.14 +0.7 772,013 - CCNA_00718 0.14 -0.3 772,013 - CCNA_00718 0.14 -0.0 772,020 - CCNA_00718 0.15 +0.5 772,066 + CCNA_00718 0.20 +2.0 772,100 + CCNA_00718 0.24 +0.1 772,107 - CCNA_00718 0.25 -0.5 772,115 + CCNA_00718 0.25 +2.0 772,130 + CCNA_00718 0.27 -1.9 772,130 + CCNA_00718 0.27 -0.6 772,130 + CCNA_00718 0.27 -1.2 772,130 + CCNA_00718 0.27 +2.0 772,169 - CCNA_00718 0.31 +1.6 772,212 + CCNA_00718 0.36 +2.0 772,218 - CCNA_00718 0.37 -0.0 772,218 - CCNA_00718 0.37 +0.9 772,218 - CCNA_00718 0.37 -0.5 772,229 + CCNA_00718 0.38 -0.0 772,285 + CCNA_00718 0.44 -3.0 772,341 - CCNA_00718 0.51 +0.9 772,355 - CCNA_00718 0.52 +0.1 772,355 - CCNA_00718 0.52 +4.6 772,356 + CCNA_00718 0.52 +1.5 772,358 + CCNA_00718 0.53 -0.7 772,366 + CCNA_00718 0.53 -0.0 772,389 - CCNA_00718 0.56 +0.2 772,389 - CCNA_00718 0.56 +0.2 772,389 - CCNA_00718 0.56 +0.3 772,390 - CCNA_00718 0.56 +0.4 772,432 - CCNA_00718 0.61 +0.7 772,432 - CCNA_00718 0.61 +0.8 772,432 - CCNA_00718 0.61 +0.2 772,447 + CCNA_00718 0.62 +1.0 772,447 + CCNA_00718 0.62 -1.7 772,455 - CCNA_00718 0.63 +1.5 772,468 + CCNA_00718 0.65 -0.6 772,468 + CCNA_00718 0.65 -1.5 772,468 + CCNA_00718 0.65 -0.6 772,468 + CCNA_00718 0.65 -0.6 772,468 + CCNA_00718 0.65 -1.0 772,468 + CCNA_00718 0.65 -0.3 772,468 + CCNA_00718 0.65 -2.0 772,471 - CCNA_00718 0.65 +1.1 772,476 - CCNA_00718 0.66 -0.2 772,476 - CCNA_00718 0.66 +0.3 772,476 - CCNA_00718 0.66 -0.4 772,476 - CCNA_00718 0.66 +0.4 772,476 - CCNA_00718 0.66 +0.1 772,476 - CCNA_00718 0.66 +0.2 772,476 - CCNA_00718 0.66 -0.3 772,476 - CCNA_00718 0.66 +1.0 772,565 + CCNA_00718 0.76 -3.1 772,631 + CCNA_00718 0.83 -0.9 772,639 - CCNA_00718 0.84 +0.1 772,646 - CCNA_00718 0.85 +0.6 772,646 - -1.3 772,690 + CCNA_00718 0.90 -1.5 772,698 - -0.4 772,698 - -0.7 772,711 - -1.7 772,711 - +1.4 772,747 + -0.0 772,752 + +0.1 772,795 - +0.6 772,795 - -1.3 772,795 - +0.9 772,795 - +1.4 772,808 - CCNA_03930 0.17 +1.0 772,812 + CCNA_03930 0.21 -0.2 772,842 + CCNA_03930 0.50 +1.0 772,847 + CCNA_03930 0.54 +0.1 772,850 - CCNA_03930 0.57 -0.1 772,852 + +1.0 772,860 - CCNA_03930 0.67 -1.0 772,860 - CCNA_03930 0.67 -0.0 772,866 + CCNA_03930 0.72 +0.6 772,869 - CCNA_03930 0.75 +1.5 772,874 - CCNA_03930 0.80 +0.7 772,874 - CCNA_03930 0.80 +0.6 772,897 - +0.1 772,956 + +0.9 772,956 + +0.4 772,964 - -0.1 772,969 + -0.1 772,985 + -0.0 772,985 + -0.3 772,991 + +0.5 772,991 + +1.8 772,991 + +2.0 772,999 - -0.2 772,999 - +0.7 772,999 - +3.0 772,999 - +0.6 773,010 - +0.1 773,030 - +0.4 773,076 - +0.5 773,080 + -1.3 773,094 + +0.4 773,095 - +1.5 773,101 - +1.3 773,102 - +1.0 773,102 - +0.9 773,102 - -0.8 773,118 - -0.8 773,120 + +0.0 773,126 - +0.7 773,126 - +0.1 773,128 - +0.5 773,161 + +0.9 773,184 - +0.9 773,192 + -3.3 773,193 + -1.6 773,193 + -0.5 773,202 - +1.0 773,202 - -0.1 773,213 + +1.6 773,213 + +0.6 773,221 - +0.3 773,221 - +1.0 773,248 + -0.5 773,248 + +1.0 773,248 + -2.0 773,248 + -1.0 773,249 + +0.1 773,249 + +1.0 773,249 + +0.8 773,249 + -0.7 773,249 + +3.0 773,256 - +1.0 773,256 - +1.1 773,257 - +0.5 773,257 - -0.0 773,257 - +1.2 773,257 - +0.7 773,257 - +0.2 773,257 - +0.8 773,257 - +0.8 773,257 - +0.3 773,268 - +2.0 773,269 - +0.5 773,270 + -0.8 773,270 + +0.1 773,271 + -0.2 773,278 - -1.4 773,279 - +0.7 773,279 - +0.5 773,309 - +0.5 773,309 - -0.0 773,309 - -0.2 773,732 + +1.0 773,732 + -3.0 773,740 - -1.2 773,740 - +0.8 773,740 - -0.2 773,742 + +0.4 773,749 + -0.8 773,767 - CCNA_03932 0.13 -2.2
Or see this region's nucleotide sequence