Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0235

Experiment: MoYLS4 with Tungstate 4mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU0234 and DVU0235 are separated by 2 nucleotidesDVU0235 and DORF26459 are separated by 97 nucleotidesDORF26459 and DVU0236 overlap by 4 nucleotides DVU0234: DVU0234 - hypothetical protein (TIGR), at 267,982 to 268,305 DVU0234 DVU0235: DVU0235 - hypothetical protein (TIGR), at 268,308 to 268,871 DVU0235 DORF26459: DORF26459 - no description, at 268,969 to 269,286 DORF26459 DVU0236: DVU0236 - site-specific recombinase, phage integrase family (TIGR), at 269,283 to 270,425 DVU0236 Position (kb) 268 269Strain fitness (log2 ratio) -2 -1 0 1 2at 267.489 kb on + strandat 267.491 kb on + strandat 267.508 kb on - strandat 267.615 kb on + strandat 267.674 kb on - strandat 267.681 kb on + strandat 267.728 kb on - strandat 267.743 kb on - strandat 267.769 kb on - strandat 267.779 kb on - strandat 267.812 kb on - strandat 267.839 kb on - strandat 267.902 kb on - strandat 267.935 kb on + strandat 267.981 kb on - strandat 268.025 kb on - strand, within DVU0234at 268.025 kb on - strand, within DVU0234at 268.027 kb on + strand, within DVU0234at 268.051 kb on + strand, within DVU0234at 268.059 kb on - strand, within DVU0234at 268.059 kb on - strand, within DVU0234at 268.083 kb on + strand, within DVU0234at 268.178 kb on - strand, within DVU0234at 268.207 kb on - strand, within DVU0234at 268.215 kb on + strand, within DVU0234at 268.220 kb on + strand, within DVU0234at 268.223 kb on - strand, within DVU0234at 268.317 kb on - strandat 268.378 kb on - strand, within DVU0235at 268.397 kb on - strand, within DVU0235at 268.407 kb on - strand, within DVU0235at 268.422 kb on + strand, within DVU0235at 268.478 kb on + strand, within DVU0235at 268.486 kb on - strand, within DVU0235at 268.486 kb on - strand, within DVU0235at 268.556 kb on - strand, within DVU0235at 268.654 kb on - strand, within DVU0235at 268.661 kb on + strand, within DVU0235at 268.699 kb on + strand, within DVU0235at 268.701 kb on + strand, within DVU0235at 268.701 kb on + strand, within DVU0235at 268.709 kb on - strand, within DVU0235at 268.709 kb on - strand, within DVU0235at 268.709 kb on - strand, within DVU0235at 268.714 kb on - strand, within DVU0235at 268.762 kb on + strand, within DVU0235at 268.779 kb on + strand, within DVU0235at 268.779 kb on + strand, within DVU0235at 268.779 kb on + strand, within DVU0235at 268.787 kb on - strand, within DVU0235at 268.787 kb on - strand, within DVU0235at 268.793 kb on + strand, within DVU0235at 268.803 kb on + strand, within DVU0235at 268.822 kb on - strandat 268.872 kb on + strandat 268.898 kb on + strandat 268.930 kb on + strandat 268.948 kb on + strandat 268.948 kb on + strandat 268.956 kb on - strandat 268.956 kb on - strandat 268.976 kb on + strandat 269.060 kb on - strand, within DORF26459at 269.074 kb on + strand, within DORF26459at 269.074 kb on + strand, within DORF26459at 269.093 kb on + strand, within DORF26459at 269.147 kb on + strand, within DORF26459at 269.155 kb on - strand, within DORF26459at 269.189 kb on - strand, within DORF26459at 269.194 kb on - strand, within DORF26459at 269.260 kb on - strandat 269.304 kb on - strandat 269.355 kb on - strandat 269.372 kb on - strandat 269.372 kb on - strandat 269.372 kb on - strandat 269.377 kb on - strandat 269.429 kb on - strand, within DVU0236at 269.465 kb on - strand, within DVU0236at 269.513 kb on + strand, within DVU0236at 269.551 kb on + strand, within DVU0236at 269.575 kb on + strand, within DVU0236at 269.583 kb on + strand, within DVU0236at 269.591 kb on - strand, within DVU0236at 269.591 kb on - strand, within DVU0236at 269.605 kb on + strand, within DVU0236at 269.613 kb on - strand, within DVU0236at 269.644 kb on + strand, within DVU0236at 269.708 kb on + strand, within DVU0236at 269.709 kb on + strand, within DVU0236at 269.709 kb on + strand, within DVU0236at 269.709 kb on + strand, within DVU0236at 269.709 kb on + strand, within DVU0236at 269.709 kb on - strand, within DVU0236at 269.710 kb on - strand, within DVU0236at 269.717 kb on - strand, within DVU0236at 269.717 kb on - strand, within DVU0236at 269.731 kb on - strand, within DVU0236at 269.742 kb on + strand, within DVU0236at 269.750 kb on - strand, within DVU0236at 269.792 kb on - strand, within DVU0236at 269.794 kb on - strand, within DVU0236at 269.796 kb on + strand, within DVU0236at 269.826 kb on - strand, within DVU0236at 269.826 kb on - strand, within DVU0236at 269.826 kb on - strand, within DVU0236

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Tungstate 4mM
remove
267,489 + -0.2
267,491 + +1.7
267,508 - -0.3
267,615 + +1.0
267,674 - -1.1
267,681 + +0.4
267,728 - -1.2
267,743 - -0.2
267,769 - -0.0
267,779 - -0.0
267,812 - +1.3
267,839 - -0.8
267,902 - +0.0
267,935 + -2.2
267,981 - +1.2
268,025 - DVU0234 0.13 -1.9
268,025 - DVU0234 0.13 -0.8
268,027 + DVU0234 0.14 -0.6
268,051 + DVU0234 0.21 -1.2
268,059 - DVU0234 0.24 -0.6
268,059 - DVU0234 0.24 +1.7
268,083 + DVU0234 0.31 -0.5
268,178 - DVU0234 0.60 -0.7
268,207 - DVU0234 0.69 -0.2
268,215 + DVU0234 0.72 -0.6
268,220 + DVU0234 0.73 -0.6
268,223 - DVU0234 0.74 -0.2
268,317 - +2.4
268,378 - DVU0235 0.12 -0.6
268,397 - DVU0235 0.16 -0.6
268,407 - DVU0235 0.18 -1.4
268,422 + DVU0235 0.20 -0.4
268,478 + DVU0235 0.30 -1.2
268,486 - DVU0235 0.32 -0.6
268,486 - DVU0235 0.32 -1.3
268,556 - DVU0235 0.44 -0.0
268,654 - DVU0235 0.61 +0.1
268,661 + DVU0235 0.63 -2.2
268,699 + DVU0235 0.69 -1.8
268,701 + DVU0235 0.70 +1.9
268,701 + DVU0235 0.70 -1.2
268,709 - DVU0235 0.71 -1.0
268,709 - DVU0235 0.71 -0.4
268,709 - DVU0235 0.71 -1.1
268,714 - DVU0235 0.72 +1.7
268,762 + DVU0235 0.80 -0.1
268,779 + DVU0235 0.84 +1.5
268,779 + DVU0235 0.84 +0.7
268,779 + DVU0235 0.84 -2.0
268,787 - DVU0235 0.85 -0.1
268,787 - DVU0235 0.85 -0.6
268,793 + DVU0235 0.86 -1.7
268,803 + DVU0235 0.88 -0.2
268,822 - -1.2
268,872 + +1.5
268,898 + +1.0
268,930 + -0.8
268,948 + -0.6
268,948 + -0.1
268,956 - -0.5
268,956 - +0.2
268,976 + -0.5
269,060 - DORF26459 0.29 +1.0
269,074 + DORF26459 0.33 -0.2
269,074 + DORF26459 0.33 +1.1
269,093 + DORF26459 0.39 -0.6
269,147 + DORF26459 0.56 +0.7
269,155 - DORF26459 0.58 -1.4
269,189 - DORF26459 0.69 -1.5
269,194 - DORF26459 0.71 -1.0
269,260 - -1.1
269,304 - -0.9
269,355 - -0.9
269,372 - -0.3
269,372 - -0.7
269,372 - -0.4
269,377 - -0.2
269,429 - DVU0236 0.13 +1.0
269,465 - DVU0236 0.16 -0.6
269,513 + DVU0236 0.20 +0.6
269,551 + DVU0236 0.23 -1.1
269,575 + DVU0236 0.26 -1.5
269,583 + DVU0236 0.26 +0.7
269,591 - DVU0236 0.27 -0.2
269,591 - DVU0236 0.27 -0.9
269,605 + DVU0236 0.28 +0.1
269,613 - DVU0236 0.29 +0.3
269,644 + DVU0236 0.32 -1.1
269,708 + DVU0236 0.37 -0.8
269,709 + DVU0236 0.37 +1.3
269,709 + DVU0236 0.37 -1.5
269,709 + DVU0236 0.37 -0.3
269,709 + DVU0236 0.37 +0.3
269,709 - DVU0236 0.37 -1.6
269,710 - DVU0236 0.37 -2.0
269,717 - DVU0236 0.38 -1.7
269,717 - DVU0236 0.38 +0.5
269,731 - DVU0236 0.39 -2.4
269,742 + DVU0236 0.40 +0.1
269,750 - DVU0236 0.41 -0.7
269,792 - DVU0236 0.45 -0.6
269,794 - DVU0236 0.45 -1.4
269,796 + DVU0236 0.45 -0.9
269,826 - DVU0236 0.48 +0.1
269,826 - DVU0236 0.48 +0.2
269,826 - DVU0236 0.48 -1.1

Or see this region's nucleotide sequence