Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0107

Experiment: MoYLS4 with Tungstate 4mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntglnQ and glnP are separated by 73 nucleotidesglnP and glnH are separated by 114 nucleotidesglnH and DVU0108 are separated by 291 nucleotides DVU0105: glnQ - glutamine ABC transporter, ATP-binding protein (TIGR), at 138,176 to 138,910 glnQ DVU0106: glnP - glutamine ABC transporter, permease protein (TIGR), at 138,984 to 139,655 glnP DVU0107: glnH - glutamine ABC transporter, periplasmic glutamine-binding protein (TIGR), at 139,770 to 140,519 glnH DVU0108: DVU0108 - hypothetical protein (TIGR), at 140,811 to 140,918 DVU0108 Position (kb) 139 140 141Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 138.775 kb on - strand, within glnQat 138.790 kb on + strand, within glnQat 138.798 kb on - strand, within glnQat 138.875 kb on - strandat 139.039 kb on + strandat 139.049 kb on - strandat 139.188 kb on - strand, within glnPat 139.226 kb on + strand, within glnPat 139.231 kb on + strand, within glnPat 139.252 kb on + strand, within glnPat 139.252 kb on + strand, within glnPat 139.252 kb on + strand, within glnPat 139.252 kb on + strand, within glnPat 139.260 kb on - strand, within glnPat 139.260 kb on - strand, within glnPat 139.260 kb on - strand, within glnPat 139.285 kb on + strand, within glnPat 139.285 kb on + strand, within glnPat 139.293 kb on - strand, within glnPat 139.293 kb on - strand, within glnPat 139.295 kb on + strand, within glnPat 139.405 kb on - strand, within glnPat 139.532 kb on + strand, within glnPat 139.532 kb on + strand, within glnPat 139.573 kb on - strand, within glnPat 139.693 kb on - strandat 139.742 kb on + strandat 139.831 kb on + strandat 139.831 kb on + strandat 139.831 kb on + strandat 139.839 kb on - strandat 139.849 kb on - strand, within glnHat 139.897 kb on + strand, within glnHat 139.905 kb on - strand, within glnHat 139.905 kb on - strand, within glnHat 139.930 kb on + strand, within glnHat 139.930 kb on + strand, within glnHat 139.930 kb on + strand, within glnHat 139.936 kb on + strand, within glnHat 139.937 kb on - strand, within glnHat 139.938 kb on - strand, within glnHat 139.947 kb on + strand, within glnHat 139.967 kb on + strand, within glnHat 140.011 kb on + strand, within glnHat 140.044 kb on + strand, within glnHat 140.136 kb on + strand, within glnHat 140.144 kb on - strand, within glnHat 140.146 kb on + strand, within glnHat 140.154 kb on - strand, within glnHat 140.176 kb on + strand, within glnHat 140.336 kb on - strand, within glnHat 140.343 kb on - strand, within glnHat 140.399 kb on - strand, within glnHat 140.465 kb on - strandat 140.501 kb on - strandat 140.543 kb on + strandat 140.564 kb on - strandat 140.658 kb on + strandat 140.666 kb on + strandat 140.668 kb on + strandat 140.757 kb on + strandat 140.757 kb on + strandat 140.788 kb on + strandat 140.808 kb on - strandat 140.818 kb on - strandat 140.898 kb on - strand, within DVU0108at 140.898 kb on - strand, within DVU0108at 140.927 kb on - strandat 141.065 kb on + strandat 141.155 kb on + strandat 141.163 kb on - strandat 141.199 kb on - strandat 141.215 kb on + strandat 141.239 kb on + strandat 141.247 kb on - strandat 141.284 kb on + strandat 141.302 kb on - strandat 141.302 kb on - strandat 141.355 kb on - strandat 141.369 kb on - strandat 141.373 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Tungstate 4mM
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138,775 - glnQ DVU0105 0.81 -0.7
138,790 + glnQ DVU0105 0.84 -1.2
138,798 - glnQ DVU0105 0.85 -1.1
138,875 - -0.7
139,039 + -1.6
139,049 - -0.5
139,188 - glnP DVU0106 0.30 +0.9
139,226 + glnP DVU0106 0.36 -1.6
139,231 + glnP DVU0106 0.37 -0.2
139,252 + glnP DVU0106 0.40 -2.4
139,252 + glnP DVU0106 0.40 -1.1
139,252 + glnP DVU0106 0.40 -0.1
139,252 + glnP DVU0106 0.40 -0.6
139,260 - glnP DVU0106 0.41 +1.6
139,260 - glnP DVU0106 0.41 +1.9
139,260 - glnP DVU0106 0.41 -1.6
139,285 + glnP DVU0106 0.45 -0.2
139,285 + glnP DVU0106 0.45 +0.2
139,293 - glnP DVU0106 0.46 -1.1
139,293 - glnP DVU0106 0.46 -0.7
139,295 + glnP DVU0106 0.46 -1.1
139,405 - glnP DVU0106 0.63 +0.9
139,532 + glnP DVU0106 0.82 -0.6
139,532 + glnP DVU0106 0.82 +0.2
139,573 - glnP DVU0106 0.88 -1.1
139,693 - -1.7
139,742 + +0.5
139,831 + -1.6
139,831 + -0.5
139,831 + -0.2
139,839 - +1.2
139,849 - glnH DVU0107 0.11 +0.1
139,897 + glnH DVU0107 0.17 -0.8
139,905 - glnH DVU0107 0.18 -1.2
139,905 - glnH DVU0107 0.18 -0.8
139,930 + glnH DVU0107 0.21 -0.6
139,930 + glnH DVU0107 0.21 -1.4
139,930 + glnH DVU0107 0.21 -0.0
139,936 + glnH DVU0107 0.22 -0.2
139,937 - glnH DVU0107 0.22 -0.3
139,938 - glnH DVU0107 0.22 -2.1
139,947 + glnH DVU0107 0.24 -0.6
139,967 + glnH DVU0107 0.26 -0.4
140,011 + glnH DVU0107 0.32 -1.1
140,044 + glnH DVU0107 0.37 -0.8
140,136 + glnH DVU0107 0.49 -0.9
140,144 - glnH DVU0107 0.50 -2.0
140,146 + glnH DVU0107 0.50 -0.1
140,154 - glnH DVU0107 0.51 -0.0
140,176 + glnH DVU0107 0.54 -3.5
140,336 - glnH DVU0107 0.75 -1.6
140,343 - glnH DVU0107 0.76 -0.7
140,399 - glnH DVU0107 0.84 +1.4
140,465 - +2.9
140,501 - -1.8
140,543 + +2.2
140,564 - +1.6
140,658 + +0.1
140,666 + +0.3
140,668 + -0.3
140,757 + -1.2
140,757 + +0.1
140,788 + +0.3
140,808 - -0.5
140,818 - -0.3
140,898 - DVU0108 0.81 -0.2
140,898 - DVU0108 0.81 +0.3
140,927 - -0.4
141,065 + -0.3
141,155 + -0.0
141,163 - -0.3
141,199 - +0.2
141,215 + +0.8
141,239 + -1.3
141,247 - -0.2
141,284 + -0.7
141,302 - -0.2
141,302 - -1.0
141,355 - -0.2
141,369 - +0.6
141,373 + -0.0

Or see this region's nucleotide sequence