Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2440

Experiment: MoYLS4 with Tungstate 4mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU2439 and DVU2440 are separated by 471 nucleotidesDVU2440 and hspC are separated by 189 nucleotideshspC and DVU2442 are separated by 60 nucleotides DVU2439: DVU2439 - efflux transporter, RND family, MFP subunit (TIGR), at 2,544,684 to 2,545,919 DVU2439 DVU2440: DVU2440 - hypothetical protein (TIGR), at 2,546,391 to 2,547,314 DVU2440 DVU2441: hspC - heat shock protein, Hsp20 family (TIGR), at 2,547,504 to 2,547,914 hspC DVU2442: DVU2442 - heat shock protein, Hsp20 family (TIGR), at 2,547,975 to 2,548,328 DVU2442 Position (kb) 2546 2547 2548Strain fitness (log2 ratio) -2 -1 0 1 2at 2545.446 kb on + strand, within DVU2439at 2545.452 kb on - strand, within DVU2439at 2545.487 kb on - strand, within DVU2439at 2545.521 kb on - strand, within DVU2439at 2545.528 kb on - strand, within DVU2439at 2545.557 kb on - strand, within DVU2439at 2545.558 kb on + strand, within DVU2439at 2545.566 kb on - strand, within DVU2439at 2545.581 kb on - strand, within DVU2439at 2545.636 kb on - strand, within DVU2439at 2545.721 kb on + strand, within DVU2439at 2545.763 kb on - strand, within DVU2439at 2545.880 kb on + strandat 2545.888 kb on - strandat 2545.924 kb on + strandat 2545.971 kb on + strandat 2546.036 kb on - strandat 2546.060 kb on + strandat 2546.140 kb on - strandat 2546.300 kb on + strandat 2546.303 kb on - strandat 2546.335 kb on + strandat 2546.364 kb on - strandat 2546.398 kb on + strandat 2546.422 kb on - strandat 2546.467 kb on + strandat 2546.495 kb on + strand, within DVU2440at 2546.523 kb on + strand, within DVU2440at 2546.618 kb on - strand, within DVU2440at 2546.628 kb on - strand, within DVU2440at 2546.647 kb on - strand, within DVU2440at 2546.649 kb on + strand, within DVU2440at 2546.654 kb on + strand, within DVU2440at 2546.657 kb on - strand, within DVU2440at 2546.693 kb on + strand, within DVU2440at 2546.735 kb on - strand, within DVU2440at 2546.753 kb on + strand, within DVU2440at 2546.838 kb on - strand, within DVU2440at 2546.898 kb on - strand, within DVU2440at 2546.898 kb on - strand, within DVU2440at 2547.038 kb on - strand, within DVU2440at 2547.043 kb on - strand, within DVU2440at 2547.107 kb on + strand, within DVU2440at 2547.195 kb on - strand, within DVU2440at 2547.248 kb on + strandat 2547.268 kb on - strandat 2547.268 kb on - strandat 2547.273 kb on + strandat 2547.375 kb on + strandat 2547.406 kb on - strandat 2547.872 kb on + strand, within hspCat 2547.888 kb on - strandat 2547.908 kb on + strandat 2548.162 kb on - strand, within DVU2442at 2548.201 kb on + strand, within DVU2442at 2548.209 kb on + strand, within DVU2442at 2548.267 kb on + strand, within DVU2442

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Tungstate 4mM
remove
2,545,446 + DVU2439 0.62 +0.2
2,545,452 - DVU2439 0.62 +1.6
2,545,487 - DVU2439 0.65 -0.8
2,545,521 - DVU2439 0.68 +0.5
2,545,528 - DVU2439 0.68 -1.3
2,545,557 - DVU2439 0.71 -0.5
2,545,558 + DVU2439 0.71 +1.8
2,545,566 - DVU2439 0.71 -0.6
2,545,581 - DVU2439 0.73 +0.0
2,545,636 - DVU2439 0.77 +0.7
2,545,721 + DVU2439 0.84 -1.1
2,545,763 - DVU2439 0.87 +2.1
2,545,880 + -1.0
2,545,888 - -0.3
2,545,924 + -1.2
2,545,971 + +1.0
2,546,036 - -0.6
2,546,060 + -0.9
2,546,140 - -0.8
2,546,300 + +0.7
2,546,303 - -0.6
2,546,335 + +1.2
2,546,364 - +0.4
2,546,398 + -0.4
2,546,422 - +1.5
2,546,467 + -1.4
2,546,495 + DVU2440 0.11 -0.9
2,546,523 + DVU2440 0.14 -0.9
2,546,618 - DVU2440 0.25 -1.5
2,546,628 - DVU2440 0.26 -0.7
2,546,647 - DVU2440 0.28 +0.2
2,546,649 + DVU2440 0.28 -0.5
2,546,654 + DVU2440 0.28 -0.5
2,546,657 - DVU2440 0.29 +0.3
2,546,693 + DVU2440 0.33 -1.3
2,546,735 - DVU2440 0.37 -0.3
2,546,753 + DVU2440 0.39 -1.0
2,546,838 - DVU2440 0.48 -0.4
2,546,898 - DVU2440 0.55 -1.6
2,546,898 - DVU2440 0.55 +0.9
2,547,038 - DVU2440 0.70 -0.7
2,547,043 - DVU2440 0.71 -0.1
2,547,107 + DVU2440 0.77 -1.3
2,547,195 - DVU2440 0.87 -1.8
2,547,248 + +1.4
2,547,268 - -1.0
2,547,268 - -1.8
2,547,273 + +0.0
2,547,375 + -0.6
2,547,406 - -0.9
2,547,872 + hspC DVU2441 0.90 +0.4
2,547,888 - -1.6
2,547,908 + -1.0
2,548,162 - DVU2442 0.53 -0.3
2,548,201 + DVU2442 0.64 -0.0
2,548,209 + DVU2442 0.66 -0.6
2,548,267 + DVU2442 0.82 +0.7

Or see this region's nucleotide sequence