Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2400

Experiment: MoYLS4 with Tungstate 4mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2399 and DVU2400 overlap by 8 nucleotidesDVU2400 and DVU2401 overlap by 4 nucleotides DVU2399: DVU2399 - hydrogenase, putative (TIGR), at 2,502,951 to 2,503,838 DVU2399 DVU2400: DVU2400 - hydrogenase, putative (TIGR), at 2,503,831 to 2,504,913 DVU2400 DVU2401: DVU2401 - hydrogenase, iron-sulfur cluster-binding subunit, putative (TIGR), at 2,504,910 to 2,506,394 DVU2401 Position (kb) 2503 2504 2505Strain fitness (log2 ratio) -1 0 1 2 3 4at 2502.866 kb on - strandat 2502.932 kb on + strandat 2502.937 kb on + strandat 2502.937 kb on + strandat 2502.945 kb on - strandat 2502.945 kb on - strandat 2502.980 kb on + strandat 2502.995 kb on - strandat 2502.995 kb on - strandat 2502.995 kb on - strandat 2503.081 kb on + strand, within DVU2399at 2503.177 kb on + strand, within DVU2399at 2503.185 kb on - strand, within DVU2399at 2503.330 kb on - strand, within DVU2399at 2503.330 kb on - strand, within DVU2399at 2503.347 kb on - strand, within DVU2399at 2503.347 kb on - strand, within DVU2399at 2503.349 kb on + strand, within DVU2399at 2503.349 kb on + strand, within DVU2399at 2503.374 kb on + strand, within DVU2399at 2503.725 kb on + strand, within DVU2399at 2503.735 kb on + strand, within DVU2399at 2503.735 kb on + strand, within DVU2399at 2503.735 kb on + strand, within DVU2399at 2503.743 kb on - strand, within DVU2399at 2503.771 kb on - strandat 2503.781 kb on + strandat 2504.030 kb on - strand, within DVU2400at 2504.058 kb on + strand, within DVU2400at 2504.267 kb on - strand, within DVU2400at 2504.452 kb on + strand, within DVU2400at 2504.491 kb on - strand, within DVU2400at 2504.545 kb on - strand, within DVU2400at 2504.668 kb on + strand, within DVU2400at 2504.676 kb on - strand, within DVU2400at 2504.759 kb on - strand, within DVU2400at 2504.876 kb on + strandat 2504.899 kb on - strandat 2505.052 kb on - strandat 2505.086 kb on + strand, within DVU2401at 2505.220 kb on - strand, within DVU2401at 2505.258 kb on + strand, within DVU2401at 2505.367 kb on + strand, within DVU2401at 2505.369 kb on + strand, within DVU2401at 2505.375 kb on - strand, within DVU2401at 2505.462 kb on - strand, within DVU2401at 2505.549 kb on + strand, within DVU2401at 2505.575 kb on + strand, within DVU2401at 2505.737 kb on + strand, within DVU2401at 2505.850 kb on + strand, within DVU2401

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Tungstate 4mM
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2,502,866 - +0.9
2,502,932 + +0.1
2,502,937 + +1.2
2,502,937 + -1.1
2,502,945 - +0.7
2,502,945 - +0.2
2,502,980 + +1.0
2,502,995 - +0.3
2,502,995 - +0.5
2,502,995 - +1.2
2,503,081 + DVU2399 0.15 +2.3
2,503,177 + DVU2399 0.25 +1.1
2,503,185 - DVU2399 0.26 +0.4
2,503,330 - DVU2399 0.43 +0.9
2,503,330 - DVU2399 0.43 +1.2
2,503,347 - DVU2399 0.45 +1.6
2,503,347 - DVU2399 0.45 +1.1
2,503,349 + DVU2399 0.45 +0.4
2,503,349 + DVU2399 0.45 +0.6
2,503,374 + DVU2399 0.48 +0.6
2,503,725 + DVU2399 0.87 -0.1
2,503,735 + DVU2399 0.88 +1.2
2,503,735 + DVU2399 0.88 +1.2
2,503,735 + DVU2399 0.88 -0.3
2,503,743 - DVU2399 0.89 +0.2
2,503,771 - -0.6
2,503,781 + +3.6
2,504,030 - DVU2400 0.18 +0.5
2,504,058 + DVU2400 0.21 +1.2
2,504,267 - DVU2400 0.40 +2.0
2,504,452 + DVU2400 0.57 +1.3
2,504,491 - DVU2400 0.61 +2.8
2,504,545 - DVU2400 0.66 +0.2
2,504,668 + DVU2400 0.77 +0.2
2,504,676 - DVU2400 0.78 +1.2
2,504,759 - DVU2400 0.86 +0.0
2,504,876 + +0.5
2,504,899 - +1.6
2,505,052 - -0.5
2,505,086 + DVU2401 0.12 -0.0
2,505,220 - DVU2401 0.21 -0.1
2,505,258 + DVU2401 0.23 +1.6
2,505,367 + DVU2401 0.31 +0.3
2,505,369 + DVU2401 0.31 +1.6
2,505,375 - DVU2401 0.31 +0.9
2,505,462 - DVU2401 0.37 +0.6
2,505,549 + DVU2401 0.43 +1.0
2,505,575 + DVU2401 0.45 +3.8
2,505,737 + DVU2401 0.56 +1.5
2,505,850 + DVU2401 0.63 -0.8

Or see this region's nucleotide sequence