Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1528

Experiment: MoYLS4 with Tungstate 4mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU1527 and tRNA-Ser are separated by 176 nucleotidestRNA-Ser and DVU1528 are separated by 342 nucleotidesDVU1528 and DVU1529 are separated by 220 nucleotides DVU1527: DVU1527 - site-specific recombinase, phage integrase family (TIGR), at 1,594,709 to 1,595,902 DVU1527 DVU_tRNA-Ser-4: tRNA-Ser - tRNA with anticodon CGA for Ser (VIMSS-AUTO), at 1,596,079 to 1,596,173 tRNA-Ser DVU1528: DVU1528 - cytidine/deoxycytidylate deaminase family protein (TIGR), at 1,596,516 to 1,597,001 DVU1528 DVU1529: DVU1529 - decarboxylase family protein (TIGR), at 1,597,222 to 1,597,878 DVU1529 Position (kb) 1596 1597 1598Strain fitness (log2 ratio) -2 -1 0 1 2at 1595.531 kb on - strand, within DVU1527at 1595.587 kb on + strand, within DVU1527at 1595.818 kb on + strandat 1595.826 kb on - strandat 1595.883 kb on + strandat 1595.891 kb on - strandat 1595.925 kb on - strandat 1595.958 kb on + strandat 1596.343 kb on + strandat 1596.343 kb on + strandat 1596.358 kb on - strandat 1596.371 kb on - strandat 1596.378 kb on + strandat 1596.403 kb on - strandat 1596.405 kb on + strandat 1596.405 kb on + strandat 1596.499 kb on + strandat 1596.499 kb on + strandat 1596.507 kb on - strandat 1596.507 kb on - strandat 1596.523 kb on + strandat 1597.070 kb on - strandat 1597.151 kb on - strandat 1597.166 kb on + strandat 1597.166 kb on + strandat 1597.174 kb on - strandat 1597.174 kb on - strandat 1597.174 kb on - strandat 1597.186 kb on + strandat 1597.187 kb on + strandat 1597.276 kb on - strandat 1597.291 kb on + strand, within DVU1529at 1597.425 kb on - strand, within DVU1529at 1597.425 kb on - strand, within DVU1529at 1597.468 kb on - strand, within DVU1529at 1597.474 kb on + strand, within DVU1529at 1597.535 kb on + strand, within DVU1529at 1597.543 kb on + strand, within DVU1529at 1597.548 kb on + strand, within DVU1529at 1597.556 kb on - strand, within DVU1529at 1597.721 kb on - strand, within DVU1529at 1597.773 kb on - strand, within DVU1529at 1597.807 kb on - strand, within DVU1529at 1597.819 kb on - strandat 1597.823 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Tungstate 4mM
remove
1,595,531 - DVU1527 0.69 -0.4
1,595,587 + DVU1527 0.74 -1.1
1,595,818 + -0.1
1,595,826 - +0.5
1,595,883 + +1.2
1,595,891 - +0.1
1,595,925 - -0.1
1,595,958 + +0.1
1,596,343 + -0.8
1,596,343 + -1.8
1,596,358 - -0.5
1,596,371 - -0.5
1,596,378 + -1.8
1,596,403 - +1.5
1,596,405 + -0.1
1,596,405 + -0.1
1,596,499 + -0.7
1,596,499 + -0.7
1,596,507 - -0.0
1,596,507 - +0.2
1,596,523 + +0.6
1,597,070 - +0.2
1,597,151 - +2.0
1,597,166 + +0.8
1,597,166 + -0.8
1,597,174 - -0.1
1,597,174 - -0.3
1,597,174 - +1.0
1,597,186 + -0.2
1,597,187 + -1.2
1,597,276 - +0.3
1,597,291 + DVU1529 0.11 +0.6
1,597,425 - DVU1529 0.31 -0.3
1,597,425 - DVU1529 0.31 +1.0
1,597,468 - DVU1529 0.37 -0.2
1,597,474 + DVU1529 0.38 -0.1
1,597,535 + DVU1529 0.48 -0.5
1,597,543 + DVU1529 0.49 +0.8
1,597,548 + DVU1529 0.50 -0.0
1,597,556 - DVU1529 0.51 +1.6
1,597,721 - DVU1529 0.76 +2.0
1,597,773 - DVU1529 0.84 -0.7
1,597,807 - DVU1529 0.89 -2.6
1,597,819 - +0.3
1,597,823 + -0.3

Or see this region's nucleotide sequence