Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5080

Experiment: 4-hydroxybutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-hydroxybutyric (C)
6,022,942	+		Psyr_5079	0.37	-0.9
6,022,942	+		Psyr_5079	0.37	-3.4
6,022,942	+		Psyr_5079	0.37	+0.1
6,022,943	-		Psyr_5079	0.37	-0.7
6,022,943	-		Psyr_5079	0.37	-0.3
6,022,947	+		Psyr_5079	0.37	+0.6
6,022,947	+		Psyr_5079	0.37	-2.2
6,022,947	+		Psyr_5079	0.37	-1.2
6,022,983	+		Psyr_5079	0.40	-2.9
6,022,983	+		Psyr_5079	0.40	-1.9
6,022,983	+		Psyr_5079	0.40	+0.7
6,022,983	+		Psyr_5079	0.40	-0.5
6,022,983	+		Psyr_5079	0.40	-0.0
6,022,983	+		Psyr_5079	0.40	+0.4
6,022,983	+		Psyr_5079	0.40	+0.9
6,022,983	+		Psyr_5079	0.40	+0.4
6,022,983	+		Psyr_5079	0.40	-0.4
6,022,983	+		Psyr_5079	0.40	-0.6
6,022,984	-		Psyr_5079	0.40	+0.4
6,022,984	-		Psyr_5079	0.40	-0.4
6,022,984	-		Psyr_5079	0.40	+2.4
6,022,984	-		Psyr_5079	0.40	-0.6
6,022,984	-		Psyr_5079	0.40	+0.4
6,022,984	-		Psyr_5079	0.40	-0.6
6,022,996	+		Psyr_5079	0.41	+0.0
6,022,997	-		Psyr_5079	0.41	-1.9
6,023,017	+		Psyr_5079	0.42	+0.2
6,023,017	+		Psyr_5079	0.42	+0.4
6,023,018	-		Psyr_5079	0.42	-0.4
6,023,018	-		Psyr_5079	0.42	+0.2
6,023,018	-		Psyr_5079	0.42	-0.2
6,023,112	+		Psyr_5079	0.49	-0.4
6,023,112	+		Psyr_5079	0.49	-1.8
6,023,112	+		Psyr_5079	0.49	-0.2
6,023,112	+		Psyr_5079	0.49	-1.2
6,023,113	-		Psyr_5079	0.49	+1.4
6,023,113	-		Psyr_5079	0.49	-0.3
6,023,113	-		Psyr_5079	0.49	-0.2
6,023,113	-		Psyr_5079	0.49	+1.5
6,023,113	-		Psyr_5079	0.49	-0.3
6,023,113	-		Psyr_5079	0.49	+0.4
6,023,114	+		Psyr_5079	0.49	-1.2
6,023,114	+		Psyr_5079	0.49	+0.4
6,023,114	+		Psyr_5079	0.49	-1.8
6,023,114	+		Psyr_5079	0.49	-1.6
6,023,114	+		Psyr_5079	0.49	-3.3
6,023,114	+		Psyr_5079	0.49	+0.6
6,023,115	-		Psyr_5079	0.49	-0.1
6,023,115	-		Psyr_5079	0.49	-1.1
6,023,115	-		Psyr_5079	0.49	+0.6
6,023,115	-		Psyr_5079	0.49	-0.2
6,023,115	-		Psyr_5079	0.49	-0.6
6,023,115	-		Psyr_5079	0.49	+0.9
6,023,116	+		Psyr_5079	0.49	-1.2
6,023,116	+		Psyr_5079	0.49	+1.0
6,023,116	+		Psyr_5079	0.49	+0.4
6,023,116	+		Psyr_5079	0.49	+1.8
6,023,116	+		Psyr_5079	0.49	-0.4
6,023,116	+		Psyr_5079	0.49	-0.0
6,023,116	+		Psyr_5079	0.49	+1.6
6,023,117	-		Psyr_5079	0.49	-2.4
6,023,117	-		Psyr_5079	0.49	-2.0
6,023,117	-		Psyr_5079	0.49	-0.1
6,023,117	-		Psyr_5079	0.49	+0.8
6,023,117	-		Psyr_5079	0.49	+1.2
6,023,117	-		Psyr_5079	0.49	+0.7
6,023,117	-		Psyr_5079	0.49	-0.4
6,023,117	-		Psyr_5079	0.49	+0.6
6,023,117	-		Psyr_5079	0.49	+0.3
6,023,117	-		Psyr_5079	0.49	-0.3
6,023,126	+		Psyr_5079	0.50	-1.6
6,023,126	+		Psyr_5079	0.50	-0.8
6,023,127	-		Psyr_5079	0.50	+0.1
6,023,127	-		Psyr_5079	0.50	-1.2
6,023,142	+		Psyr_5079	0.51	+0.4
6,023,142	+		Psyr_5079	0.51	+1.7
6,023,142	+		Psyr_5079	0.51	-0.6
6,023,142	+		Psyr_5079	0.51	-0.4
6,023,142	+		Psyr_5079	0.51	+0.6
6,023,142	+		Psyr_5079	0.51	-0.2
6,023,142	+		Psyr_5079	0.51	-1.2
6,023,142	+		Psyr_5079	0.51	+1.0
6,023,142	+		Psyr_5079	0.51	-1.0
6,023,142	+		Psyr_5079	0.51	-0.4
6,023,142	+		Psyr_5079	0.51	+1.2
6,023,142	+		Psyr_5079	0.51	+0.4
6,023,142	+		Psyr_5079	0.51	-1.2
6,023,142	+		Psyr_5079	0.51	+0.2
6,023,142	+		Psyr_5079	0.51	-1.6
6,023,142	+		Psyr_5079	0.51	-0.3
6,023,142	+		Psyr_5079	0.51	-0.8
6,023,143	-		Psyr_5079	0.51	-0.4
6,023,143	-		Psyr_5079	0.51	-0.2
6,023,143	-		Psyr_5079	0.51	-0.3
6,023,143	-		Psyr_5079	0.51	-0.0
6,023,143	-		Psyr_5079	0.51	+0.3
6,023,143	-		Psyr_5079	0.51	-0.6
6,023,143	-		Psyr_5079	0.51	+0.2
6,023,143	-		Psyr_5079	0.51	-0.2
6,023,143	-		Psyr_5079	0.51	+0.2
6,023,143	-		Psyr_5079	0.51	-1.6
6,023,143	-		Psyr_5079	0.51	-0.5
6,023,143	-		Psyr_5079	0.51	+1.4
6,023,143	-		Psyr_5079	0.51	+1.4
6,023,143	-		Psyr_5079	0.51	+0.5
6,023,143	-		Psyr_5079	0.51	+1.6
6,023,143	-		Psyr_5079	0.51	+1.5
6,023,143	-		Psyr_5079	0.51	-0.1
6,023,143	-		Psyr_5079	0.51	+0.8
6,023,143	-		Psyr_5079	0.51	-1.2
6,023,143	-		Psyr_5079	0.51	+0.2
6,023,143	-		Psyr_5079	0.51	+1.2
6,023,143	-		Psyr_5079	0.51	-0.3
6,023,143	-		Psyr_5079	0.51	-0.1
6,023,415	+		Psyr_5079	0.70	-0.2
6,023,415	+		Psyr_5079	0.70	-2.9
6,023,416	-		Psyr_5079	0.70	-0.2
6,023,416	-		Psyr_5079	0.70	+2.4
6,023,511	+		Psyr_5079	0.76	+0.7
6,023,511	+		Psyr_5079	0.76	+1.0
6,023,511	+		Psyr_5079	0.76	-1.1
6,023,512	-		Psyr_5079	0.77	-0.3
6,023,512	-		Psyr_5079	0.77	-2.0
6,023,512	-		Psyr_5079	0.77	+0.9
6,023,512	-		Psyr_5079	0.77	+0.4
6,023,520	+		Psyr_5079	0.77	+1.8
6,023,520	+		Psyr_5079	0.77	+1.4
6,023,520	+		Psyr_5079	0.77	+0.6
6,023,520	+		Psyr_5079	0.77	+0.8
6,023,520	+		Psyr_5079	0.77	+0.4
6,023,520	+		Psyr_5079	0.77	+0.6
6,023,520	+		Psyr_5079	0.77	-0.6
6,023,520	+		Psyr_5079	0.77	-1.1
6,023,520	+		Psyr_5079	0.77	+0.5
6,023,521	-		Psyr_5079	0.77	+1.4
6,023,521	-		Psyr_5079	0.77	-0.2
6,023,521	-		Psyr_5079	0.77	+1.2
6,023,521	-		Psyr_5079	0.77	+0.5
6,023,538	+		Psyr_5079	0.78	+1.1
6,023,538	+		Psyr_5079	0.78	-0.1
6,023,573	-		Psyr_5079	0.81	-1.5
6,023,814	-				+0.2
6,023,864	-				-0.7
6,023,903	+				+0.4
6,023,903	+				+0.1
6,023,903	+				+1.4
6,023,903	+				-1.1
6,023,904	-				-0.0
6,023,907	+				+1.9
6,023,907	+				-0.2
6,023,908	-				-0.5
6,023,908	-				-0.1
6,023,957	-				-2.4
6,024,020	+		Psyr_5080	0.10	+0.1
6,024,021	-		Psyr_5080	0.11	-1.0
6,024,139	+		Psyr_5080	0.20	+0.4
6,024,139	+		Psyr_5080	0.20	+1.0
6,024,139	+		Psyr_5080	0.20	+0.1
6,024,140	-		Psyr_5080	0.21	-0.8
6,024,140	-		Psyr_5080	0.21	+0.2
6,024,140	-		Psyr_5080	0.21	+0.7
6,024,140	-		Psyr_5080	0.21	-0.4
6,024,140	-		Psyr_5080	0.21	+0.1
6,024,192	+		Psyr_5080	0.25	+0.4
6,024,221	+		Psyr_5080	0.27	-0.5
6,024,222	-		Psyr_5080	0.27	-0.2
6,024,271	-		Psyr_5080	0.32	-0.0
6,024,341	+		Psyr_5080	0.37	-0.8
6,024,341	+		Psyr_5080	0.37	+1.5
6,024,341	+		Psyr_5080	0.37	-1.2
6,024,341	+		Psyr_5080	0.37	-1.4
6,024,341	+		Psyr_5080	0.37	-0.2
6,024,341	+		Psyr_5080	0.37	-1.0
6,024,342	-		Psyr_5080	0.38	+1.4
6,024,342	-		Psyr_5080	0.38	-0.2
6,024,342	-		Psyr_5080	0.38	-1.2
6,024,596	+		Psyr_5080	0.59	-2.8
6,024,597	-		Psyr_5080	0.59	-0.2
6,024,686	+		Psyr_5080	0.66	+0.4
6,024,686	+		Psyr_5080	0.66	+1.4
6,024,686	+		Psyr_5080	0.66	-0.9
6,024,699	-		Psyr_5080	0.68	+0.6
6,024,728	+		Psyr_5080	0.70	-0.6
6,024,729	-		Psyr_5080	0.70	-0.2
6,024,729	-		Psyr_5080	0.70	-0.9
6,024,729	-		Psyr_5080	0.70	+2.7
6,024,729	-		Psyr_5080	0.70	-0.8
6,024,750	-		Psyr_5080	0.72	-0.6
6,024,755	+		Psyr_5080	0.72	-0.1
6,024,898	-		Psyr_5080	0.84	+0.7
6,025,077	+				+0.8
6,025,077	+				+0.1
6,025,077	+				-0.2
6,025,122	+				+1.1
6,025,122	+				+0.2
6,025,123	-				+0.6
6,025,123	-				-1.1
6,025,123	-				+0.4
6,025,180	+				-0.4
6,025,263	+				-0.2
6,025,428	+				-0.3
6,025,428	+				+1.0
6,025,428	+				-0.4
6,025,428	+				+1.4
6,025,428	+				+1.5
6,025,429	-				-1.4
6,025,429	-				+0.5
6,025,429	-				+0.2
6,025,429	-				+0.4
6,025,429	-				+1.2
6,025,429	-				+1.8
6,025,429	-				+2.0
6,025,443	-				+1.3
6,025,713	+		Psyr_5081	0.20	+0.4