Experiment: 4-hydroxybutyric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_5045 and Psyr_5046 are separated by 83 nucleotides Psyr_5046 and Psyr_5047 are separated by 336 nucleotides Psyr_5047 and Psyr_5048 are separated by 9 nucleotides Psyr_5048 and Psyr_5049 are separated by 360 nucleotides
Psyr_5045: Psyr_5045 - conserved hypothetical protein, at 5,987,048 to 5,987,590
_5045
Psyr_5046: Psyr_5046 - Transglycosylase-associated protein, at 5,987,674 to 5,987,919
_5046
Psyr_5047: Psyr_5047 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 5,988,256 to 5,989,338
_5047
Psyr_5048: Psyr_5048 - 5-(carboxyamino)imidazole ribonucleotide mutase, at 5,989,348 to 5,989,839
_5048
Psyr_5049: Psyr_5049 - conserved hypothetical protein, at 5,990,200 to 5,990,814
_5049
Position (kb) 5988
5989
5990 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5987.278 kb on + strand, within Psyr_5045 at 5987.278 kb on + strand, within Psyr_5045 at 5987.279 kb on - strand, within Psyr_5045 at 5987.279 kb on - strand, within Psyr_5045 at 5987.279 kb on - strand, within Psyr_5045 at 5987.279 kb on - strand, within Psyr_5045 at 5987.279 kb on - strand, within Psyr_5045 at 5987.370 kb on + strand, within Psyr_5045 at 5987.370 kb on + strand, within Psyr_5045 at 5987.370 kb on + strand, within Psyr_5045 at 5987.370 kb on + strand, within Psyr_5045 at 5987.370 kb on + strand, within Psyr_5045 at 5987.370 kb on + strand, within Psyr_5045 at 5987.370 kb on + strand, within Psyr_5045 at 5987.370 kb on + strand, within Psyr_5045 at 5987.370 kb on + strand, within Psyr_5045 at 5987.370 kb on + strand, within Psyr_5045 at 5987.370 kb on + strand, within Psyr_5045 at 5987.370 kb on + strand, within Psyr_5045 at 5987.370 kb on + strand, within Psyr_5045 at 5987.371 kb on - strand, within Psyr_5045 at 5987.371 kb on - strand, within Psyr_5045 at 5987.371 kb on - strand, within Psyr_5045 at 5987.371 kb on - strand, within Psyr_5045 at 5987.371 kb on - strand, within Psyr_5045 at 5987.371 kb on - strand, within Psyr_5045 at 5987.371 kb on - strand, within Psyr_5045 at 5987.371 kb on - strand, within Psyr_5045 at 5987.371 kb on - strand, within Psyr_5045 at 5987.371 kb on - strand, within Psyr_5045 at 5987.593 kb on + strand at 5987.593 kb on + strand at 5987.594 kb on - strand at 5987.631 kb on + strand at 5987.631 kb on + strand at 5987.632 kb on - strand at 5987.649 kb on - strand at 5987.649 kb on - strand at 5987.649 kb on - strand at 5987.668 kb on + strand at 5987.676 kb on - strand at 5987.676 kb on - strand at 5987.676 kb on - strand at 5987.676 kb on - strand at 5987.696 kb on + strand at 5987.696 kb on + strand at 5987.696 kb on + strand at 5987.697 kb on - strand at 5987.697 kb on - strand at 5987.722 kb on + strand, within Psyr_5046 at 5987.722 kb on + strand, within Psyr_5046 at 5987.723 kb on - strand, within Psyr_5046 at 5987.723 kb on - strand, within Psyr_5046 at 5987.723 kb on - strand, within Psyr_5046 at 5987.786 kb on + strand, within Psyr_5046 at 5987.786 kb on + strand, within Psyr_5046 at 5987.786 kb on + strand, within Psyr_5046 at 5987.786 kb on + strand, within Psyr_5046 at 5987.786 kb on + strand, within Psyr_5046 at 5987.786 kb on + strand, within Psyr_5046 at 5987.786 kb on + strand, within Psyr_5046 at 5987.787 kb on - strand, within Psyr_5046 at 5987.787 kb on - strand, within Psyr_5046 at 5987.787 kb on - strand, within Psyr_5046 at 5987.934 kb on + strand at 5987.934 kb on + strand at 5987.934 kb on + strand at 5987.934 kb on + strand at 5987.934 kb on + strand at 5987.934 kb on + strand at 5987.935 kb on - strand at 5987.935 kb on - strand at 5987.937 kb on + strand at 5987.937 kb on + strand at 5987.937 kb on + strand at 5987.937 kb on + strand at 5987.937 kb on + strand at 5987.937 kb on + strand at 5987.937 kb on + strand at 5987.937 kb on + strand at 5987.937 kb on + strand at 5987.937 kb on + strand at 5987.938 kb on - strand at 5987.938 kb on - strand at 5987.938 kb on - strand at 5987.938 kb on - strand at 5987.938 kb on - strand at 5987.938 kb on - strand at 5987.945 kb on + strand at 5987.945 kb on + strand at 5987.946 kb on - strand at 5987.957 kb on - strand at 5987.957 kb on - strand at 5987.959 kb on + strand at 5987.959 kb on + strand at 5987.960 kb on - strand at 5987.973 kb on + strand at 5987.973 kb on + strand at 5987.973 kb on + strand at 5987.973 kb on + strand at 5987.973 kb on + strand at 5987.973 kb on + strand at 5987.973 kb on + strand at 5987.973 kb on + strand at 5987.973 kb on + strand at 5987.973 kb on + strand at 5987.973 kb on + strand at 5987.974 kb on - strand at 5987.974 kb on - strand at 5987.974 kb on - strand at 5987.974 kb on - strand at 5987.979 kb on + strand at 5987.980 kb on - strand at 5987.980 kb on - strand at 5988.118 kb on - strand at 5988.118 kb on - strand at 5988.118 kb on - strand at 5988.118 kb on - strand at 5988.118 kb on - strand at 5988.277 kb on + strand at 5989.918 kb on - strand at 5989.918 kb on - strand at 5989.958 kb on - strand at 5989.958 kb on - strand at 5989.958 kb on - strand at 5989.960 kb on - strand at 5989.979 kb on - strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.066 kb on + strand at 5990.067 kb on - strand at 5990.067 kb on - strand at 5990.067 kb on - strand at 5990.067 kb on - strand at 5990.067 kb on - strand at 5990.067 kb on - strand at 5990.067 kb on - strand at 5990.067 kb on - strand at 5990.067 kb on - strand at 5990.067 kb on - strand at 5990.067 kb on - strand at 5990.067 kb on - strand at 5990.067 kb on - strand at 5990.067 kb on - strand at 5990.067 kb on - strand at 5990.129 kb on + strand at 5990.129 kb on + strand at 5990.129 kb on + strand at 5990.129 kb on + strand at 5990.130 kb on - strand at 5990.130 kb on - strand at 5990.130 kb on - strand at 5990.130 kb on - strand at 5990.130 kb on - strand at 5990.130 kb on - strand at 5990.166 kb on - strand at 5990.169 kb on + strand at 5990.169 kb on + strand at 5990.169 kb on + strand at 5990.196 kb on - strand at 5990.196 kb on - strand at 5990.196 kb on - strand at 5990.246 kb on - strand at 5990.310 kb on + strand, within Psyr_5049 at 5990.310 kb on + strand, within Psyr_5049 at 5990.310 kb on + strand, within Psyr_5049 at 5990.310 kb on + strand, within Psyr_5049 at 5990.310 kb on + strand, within Psyr_5049 at 5990.311 kb on - strand, within Psyr_5049 at 5990.311 kb on - strand, within Psyr_5049
Per-strain Table
Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C) remove 5,987,278 + Psyr_5045 0.42 +0.8 5,987,278 + Psyr_5045 0.42 +0.0 5,987,279 - Psyr_5045 0.43 -0.9 5,987,279 - Psyr_5045 0.43 -2.2 5,987,279 - Psyr_5045 0.43 +0.4 5,987,279 - Psyr_5045 0.43 +0.8 5,987,279 - Psyr_5045 0.43 +0.3 5,987,370 + Psyr_5045 0.59 +0.6 5,987,370 + Psyr_5045 0.59 +1.0 5,987,370 + Psyr_5045 0.59 -2.3 5,987,370 + Psyr_5045 0.59 -1.2 5,987,370 + Psyr_5045 0.59 -0.8 5,987,370 + Psyr_5045 0.59 +0.7 5,987,370 + Psyr_5045 0.59 -0.6 5,987,370 + Psyr_5045 0.59 -0.0 5,987,370 + Psyr_5045 0.59 -2.4 5,987,370 + Psyr_5045 0.59 +0.1 5,987,370 + Psyr_5045 0.59 -0.4 5,987,370 + Psyr_5045 0.59 -1.9 5,987,370 + Psyr_5045 0.59 -1.2 5,987,371 - Psyr_5045 0.59 +0.4 5,987,371 - Psyr_5045 0.59 -0.2 5,987,371 - Psyr_5045 0.59 -0.4 5,987,371 - Psyr_5045 0.59 -0.0 5,987,371 - Psyr_5045 0.59 -0.8 5,987,371 - Psyr_5045 0.59 -1.4 5,987,371 - Psyr_5045 0.59 -0.0 5,987,371 - Psyr_5045 0.59 +1.1 5,987,371 - Psyr_5045 0.59 -0.4 5,987,371 - Psyr_5045 0.59 +0.4 5,987,593 + +0.9 5,987,593 + -0.8 5,987,594 - -0.3 5,987,631 + -0.5 5,987,631 + -0.3 5,987,632 - +1.0 5,987,649 - -0.2 5,987,649 - +0.9 5,987,649 - +0.5 5,987,668 + +1.2 5,987,676 - -0.6 5,987,676 - -0.1 5,987,676 - +0.4 5,987,676 - +0.2 5,987,696 + -0.5 5,987,696 + +0.2 5,987,696 + -0.8 5,987,697 - +0.1 5,987,697 - -0.5 5,987,722 + Psyr_5046 0.20 -0.8 5,987,722 + Psyr_5046 0.20 -0.9 5,987,723 - Psyr_5046 0.20 -0.3 5,987,723 - Psyr_5046 0.20 +1.0 5,987,723 - Psyr_5046 0.20 -1.0 5,987,786 + Psyr_5046 0.46 +0.2 5,987,786 + Psyr_5046 0.46 +0.1 5,987,786 + Psyr_5046 0.46 +0.8 5,987,786 + Psyr_5046 0.46 -2.2 5,987,786 + Psyr_5046 0.46 +0.8 5,987,786 + Psyr_5046 0.46 +0.4 5,987,786 + Psyr_5046 0.46 +0.2 5,987,787 - Psyr_5046 0.46 +0.5 5,987,787 - Psyr_5046 0.46 -0.8 5,987,787 - Psyr_5046 0.46 -0.8 5,987,934 + +0.4 5,987,934 + +1.2 5,987,934 + -0.1 5,987,934 + -1.2 5,987,934 + +1.4 5,987,934 + -0.4 5,987,935 - +1.4 5,987,935 - -0.2 5,987,937 + -1.2 5,987,937 + -1.2 5,987,937 + +0.6 5,987,937 + -0.6 5,987,937 + -0.2 5,987,937 + -0.2 5,987,937 + +1.8 5,987,937 + +1.4 5,987,937 + +1.6 5,987,937 + -0.9 5,987,938 - +2.8 5,987,938 - +0.1 5,987,938 - -0.1 5,987,938 - -1.4 5,987,938 - +1.4 5,987,938 - -1.0 5,987,945 + +0.4 5,987,945 + +1.2 5,987,946 - +1.6 5,987,957 - -0.8 5,987,957 - +0.0 5,987,959 + +0.6 5,987,959 + +2.0 5,987,960 - -0.3 5,987,973 + +1.8 5,987,973 + +1.1 5,987,973 + +0.1 5,987,973 + +0.1 5,987,973 + -0.9 5,987,973 + -0.9 5,987,973 + -0.6 5,987,973 + +0.1 5,987,973 + -0.6 5,987,973 + -0.8 5,987,973 + +1.5 5,987,974 - +0.4 5,987,974 - -0.1 5,987,974 - -0.2 5,987,974 - +0.4 5,987,979 + +0.9 5,987,980 - -0.0 5,987,980 - +1.2 5,988,118 - +1.1 5,988,118 - -0.5 5,988,118 - +0.4 5,988,118 - +3.0 5,988,118 - -0.9 5,988,277 + -3.4 5,989,918 - +0.2 5,989,918 - +0.4 5,989,958 - -0.3 5,989,958 - +0.8 5,989,958 - +0.2 5,989,960 - +0.0 5,989,979 - +0.4 5,990,066 + +1.5 5,990,066 + -0.4 5,990,066 + -0.6 5,990,066 + +1.8 5,990,066 + +0.8 5,990,066 + -1.8 5,990,066 + -0.2 5,990,066 + +2.0 5,990,066 + -1.4 5,990,066 + +2.7 5,990,066 + -0.6 5,990,066 + +0.6 5,990,066 + -0.4 5,990,066 + -0.8 5,990,067 - -0.0 5,990,067 - +0.6 5,990,067 - +0.4 5,990,067 - -0.6 5,990,067 - -0.6 5,990,067 - -3.3 5,990,067 - -0.8 5,990,067 - -0.4 5,990,067 - -0.0 5,990,067 - -0.8 5,990,067 - -0.8 5,990,067 - +0.4 5,990,067 - +0.2 5,990,067 - -0.9 5,990,067 - +1.4 5,990,129 + -0.4 5,990,129 + +0.1 5,990,129 + +0.0 5,990,129 + -0.2 5,990,130 - -0.8 5,990,130 - -2.2 5,990,130 - -2.3 5,990,130 - -0.9 5,990,130 - -1.9 5,990,130 - +0.8 5,990,166 - -1.9 5,990,169 + +0.5 5,990,169 + -0.1 5,990,169 + +1.5 5,990,196 - -0.4 5,990,196 - +1.0 5,990,196 - +1.3 5,990,246 - -1.2 5,990,310 + Psyr_5049 0.18 +0.1 5,990,310 + Psyr_5049 0.18 -1.2 5,990,310 + Psyr_5049 0.18 -1.2 5,990,310 + Psyr_5049 0.18 -0.3 5,990,310 + Psyr_5049 0.18 -0.2 5,990,311 - Psyr_5049 0.18 +0.0 5,990,311 - Psyr_5049 0.18 -0.0
Or see this region's nucleotide sequence