Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4737

Experiment: 4-hydroxybutyric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4736 and Psyr_4737 are separated by 109 nucleotidesPsyr_4737 and Psyr_4738 are separated by 190 nucleotides Psyr_4736: Psyr_4736 - conserved hypothetical protein, at 5,615,361 to 5,616,740 _4736 Psyr_4737: Psyr_4737 - dihydrofolate reductase, at 5,616,850 to 5,617,362 _4737 Psyr_4738: Psyr_4738 - conserved hypothetical protein, at 5,617,553 to 5,618,611 _4738 Position (kb) 5616 5617 5618Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5616.350 kb on + strand, within Psyr_4736at 5616.351 kb on - strand, within Psyr_4736at 5616.775 kb on - strandat 5616.775 kb on - strandat 5617.441 kb on + strandat 5617.442 kb on - strandat 5617.442 kb on - strandat 5617.487 kb on - strandat 5617.487 kb on - strandat 5617.503 kb on + strandat 5617.504 kb on - strandat 5617.504 kb on - strandat 5617.553 kb on - strandat 5617.700 kb on + strand, within Psyr_4738at 5617.701 kb on - strand, within Psyr_4738at 5617.763 kb on + strand, within Psyr_4738at 5617.763 kb on + strand, within Psyr_4738at 5617.763 kb on + strand, within Psyr_4738at 5617.763 kb on + strand, within Psyr_4738at 5617.763 kb on + strand, within Psyr_4738at 5617.763 kb on + strand, within Psyr_4738at 5617.763 kb on + strand, within Psyr_4738at 5617.764 kb on - strand, within Psyr_4738at 5617.865 kb on + strand, within Psyr_4738at 5617.865 kb on + strand, within Psyr_4738at 5617.865 kb on + strand, within Psyr_4738at 5617.865 kb on + strand, within Psyr_4738at 5617.866 kb on - strand, within Psyr_4738at 5617.866 kb on - strand, within Psyr_4738at 5617.866 kb on - strand, within Psyr_4738at 5617.868 kb on + strand, within Psyr_4738at 5617.868 kb on + strand, within Psyr_4738at 5617.868 kb on + strand, within Psyr_4738at 5617.868 kb on + strand, within Psyr_4738at 5617.869 kb on - strand, within Psyr_4738at 5617.869 kb on - strand, within Psyr_4738at 5617.869 kb on - strand, within Psyr_4738at 5617.869 kb on - strand, within Psyr_4738at 5617.869 kb on - strand, within Psyr_4738at 5617.869 kb on - strand, within Psyr_4738at 5617.869 kb on - strand, within Psyr_4738at 5617.869 kb on - strand, within Psyr_4738at 5617.869 kb on - strand, within Psyr_4738at 5617.869 kb on - strand, within Psyr_4738at 5617.871 kb on + strand, within Psyr_4738at 5617.871 kb on + strand, within Psyr_4738at 5617.871 kb on + strand, within Psyr_4738at 5617.872 kb on - strand, within Psyr_4738at 5617.872 kb on - strand, within Psyr_4738at 5617.887 kb on + strand, within Psyr_4738at 5617.887 kb on + strand, within Psyr_4738at 5617.887 kb on + strand, within Psyr_4738at 5617.887 kb on + strand, within Psyr_4738at 5617.888 kb on - strand, within Psyr_4738at 5617.959 kb on - strand, within Psyr_4738at 5618.003 kb on + strand, within Psyr_4738at 5618.003 kb on + strand, within Psyr_4738at 5618.004 kb on - strand, within Psyr_4738at 5618.004 kb on - strand, within Psyr_4738at 5618.004 kb on - strand, within Psyr_4738at 5618.006 kb on + strand, within Psyr_4738at 5618.006 kb on + strand, within Psyr_4738at 5618.006 kb on + strand, within Psyr_4738at 5618.007 kb on - strand, within Psyr_4738at 5618.075 kb on + strand, within Psyr_4738at 5618.075 kb on + strand, within Psyr_4738at 5618.076 kb on - strand, within Psyr_4738at 5618.076 kb on - strand, within Psyr_4738at 5618.076 kb on - strand, within Psyr_4738at 5618.076 kb on - strand, within Psyr_4738at 5618.108 kb on + strand, within Psyr_4738at 5618.108 kb on + strand, within Psyr_4738at 5618.108 kb on + strand, within Psyr_4738at 5618.108 kb on + strand, within Psyr_4738at 5618.108 kb on + strand, within Psyr_4738at 5618.108 kb on + strand, within Psyr_4738at 5618.108 kb on + strand, within Psyr_4738at 5618.108 kb on + strand, within Psyr_4738at 5618.108 kb on + strand, within Psyr_4738at 5618.108 kb on + strand, within Psyr_4738at 5618.108 kb on + strand, within Psyr_4738at 5618.108 kb on + strand, within Psyr_4738at 5618.108 kb on + strand, within Psyr_4738at 5618.108 kb on + strand, within Psyr_4738at 5618.108 kb on + strand, within Psyr_4738at 5618.108 kb on + strand, within Psyr_4738at 5618.108 kb on + strand, within Psyr_4738at 5618.108 kb on + strand, within Psyr_4738at 5618.108 kb on + strand, within Psyr_4738at 5618.109 kb on - strand, within Psyr_4738at 5618.109 kb on - strand, within Psyr_4738at 5618.109 kb on - strand, within Psyr_4738at 5618.109 kb on - strand, within Psyr_4738at 5618.109 kb on - strand, within Psyr_4738at 5618.109 kb on - strand, within Psyr_4738at 5618.109 kb on - strand, within Psyr_4738at 5618.109 kb on - strand, within Psyr_4738at 5618.109 kb on - strand, within Psyr_4738at 5618.109 kb on - strand, within Psyr_4738at 5618.109 kb on - strand, within Psyr_4738at 5618.109 kb on - strand, within Psyr_4738at 5618.109 kb on - strand, within Psyr_4738at 5618.109 kb on - strand, within Psyr_4738at 5618.109 kb on - strand, within Psyr_4738at 5618.109 kb on - strand, within Psyr_4738at 5618.109 kb on - strand, within Psyr_4738at 5618.109 kb on - strand, within Psyr_4738at 5618.109 kb on - strand, within Psyr_4738at 5618.109 kb on - strand, within Psyr_4738at 5618.109 kb on - strand, within Psyr_4738at 5618.109 kb on - strand, within Psyr_4738at 5618.109 kb on - strand, within Psyr_4738at 5618.139 kb on + strand, within Psyr_4738at 5618.140 kb on - strand, within Psyr_4738at 5618.140 kb on - strand, within Psyr_4738at 5618.273 kb on + strand, within Psyr_4738at 5618.273 kb on + strand, within Psyr_4738at 5618.273 kb on + strand, within Psyr_4738at 5618.273 kb on + strand, within Psyr_4738at 5618.273 kb on + strand, within Psyr_4738at 5618.273 kb on + strand, within Psyr_4738at 5618.273 kb on + strand, within Psyr_4738at 5618.273 kb on + strand, within Psyr_4738at 5618.273 kb on + strand, within Psyr_4738at 5618.273 kb on + strand, within Psyr_4738at 5618.273 kb on + strand, within Psyr_4738at 5618.273 kb on + strand, within Psyr_4738at 5618.273 kb on + strand, within Psyr_4738at 5618.273 kb on + strand, within Psyr_4738at 5618.274 kb on - strand, within Psyr_4738at 5618.274 kb on - strand, within Psyr_4738at 5618.274 kb on - strand, within Psyr_4738at 5618.274 kb on - strand, within Psyr_4738at 5618.274 kb on - strand, within Psyr_4738at 5618.274 kb on - strand, within Psyr_4738at 5618.274 kb on - strand, within Psyr_4738at 5618.274 kb on - strand, within Psyr_4738at 5618.274 kb on - strand, within Psyr_4738at 5618.291 kb on - strand, within Psyr_4738at 5618.313 kb on - strand, within Psyr_4738at 5618.313 kb on - strand, within Psyr_4738

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C)
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5,616,350 + Psyr_4736 0.72 +0.2
5,616,351 - Psyr_4736 0.72 +0.3
5,616,775 - +1.0
5,616,775 - +2.6
5,617,441 + +1.1
5,617,442 - -1.3
5,617,442 - -0.3
5,617,487 - +0.9
5,617,487 - -1.3
5,617,503 + +1.2
5,617,504 - -2.3
5,617,504 - -0.4
5,617,553 - -0.7
5,617,700 + Psyr_4738 0.14 -0.2
5,617,701 - Psyr_4738 0.14 -0.0
5,617,763 + Psyr_4738 0.20 +0.3
5,617,763 + Psyr_4738 0.20 +1.1
5,617,763 + Psyr_4738 0.20 +0.8
5,617,763 + Psyr_4738 0.20 +1.3
5,617,763 + Psyr_4738 0.20 -0.9
5,617,763 + Psyr_4738 0.20 -2.7
5,617,763 + Psyr_4738 0.20 -0.9
5,617,764 - Psyr_4738 0.20 +0.2
5,617,865 + Psyr_4738 0.29 +0.3
5,617,865 + Psyr_4738 0.29 +0.0
5,617,865 + Psyr_4738 0.29 -0.4
5,617,865 + Psyr_4738 0.29 +0.1
5,617,866 - Psyr_4738 0.30 -1.0
5,617,866 - Psyr_4738 0.30 +0.5
5,617,866 - Psyr_4738 0.30 +1.9
5,617,868 + Psyr_4738 0.30 -0.7
5,617,868 + Psyr_4738 0.30 +0.8
5,617,868 + Psyr_4738 0.30 -0.3
5,617,868 + Psyr_4738 0.30 +0.7
5,617,869 - Psyr_4738 0.30 -0.2
5,617,869 - Psyr_4738 0.30 +1.3
5,617,869 - Psyr_4738 0.30 +1.3
5,617,869 - Psyr_4738 0.30 -0.4
5,617,869 - Psyr_4738 0.30 -0.9
5,617,869 - Psyr_4738 0.30 +1.8
5,617,869 - Psyr_4738 0.30 +1.9
5,617,869 - Psyr_4738 0.30 +0.9
5,617,869 - Psyr_4738 0.30 +3.9
5,617,869 - Psyr_4738 0.30 +0.1
5,617,871 + Psyr_4738 0.30 -1.3
5,617,871 + Psyr_4738 0.30 +0.3
5,617,871 + Psyr_4738 0.30 -0.6
5,617,872 - Psyr_4738 0.30 +2.0
5,617,872 - Psyr_4738 0.30 +0.3
5,617,887 + Psyr_4738 0.32 -0.2
5,617,887 + Psyr_4738 0.32 +2.6
5,617,887 + Psyr_4738 0.32 +1.3
5,617,887 + Psyr_4738 0.32 +0.7
5,617,888 - Psyr_4738 0.32 -2.5
5,617,959 - Psyr_4738 0.38 -1.9
5,618,003 + Psyr_4738 0.42 +1.9
5,618,003 + Psyr_4738 0.42 -0.7
5,618,004 - Psyr_4738 0.43 +0.7
5,618,004 - Psyr_4738 0.43 -0.2
5,618,004 - Psyr_4738 0.43 +0.9
5,618,006 + Psyr_4738 0.43 +1.6
5,618,006 + Psyr_4738 0.43 +1.2
5,618,006 + Psyr_4738 0.43 +1.7
5,618,007 - Psyr_4738 0.43 +0.3
5,618,075 + Psyr_4738 0.49 -0.5
5,618,075 + Psyr_4738 0.49 +0.7
5,618,076 - Psyr_4738 0.49 +0.3
5,618,076 - Psyr_4738 0.49 -0.3
5,618,076 - Psyr_4738 0.49 +0.9
5,618,076 - Psyr_4738 0.49 -0.0
5,618,108 + Psyr_4738 0.52 -0.0
5,618,108 + Psyr_4738 0.52 -0.8
5,618,108 + Psyr_4738 0.52 +0.3
5,618,108 + Psyr_4738 0.52 -0.7
5,618,108 + Psyr_4738 0.52 -1.2
5,618,108 + Psyr_4738 0.52 +0.9
5,618,108 + Psyr_4738 0.52 -0.4
5,618,108 + Psyr_4738 0.52 -1.2
5,618,108 + Psyr_4738 0.52 +0.4
5,618,108 + Psyr_4738 0.52 +0.0
5,618,108 + Psyr_4738 0.52 -1.2
5,618,108 + Psyr_4738 0.52 +0.4
5,618,108 + Psyr_4738 0.52 +1.6
5,618,108 + Psyr_4738 0.52 +1.1
5,618,108 + Psyr_4738 0.52 +0.3
5,618,108 + Psyr_4738 0.52 +2.2
5,618,108 + Psyr_4738 0.52 +2.2
5,618,108 + Psyr_4738 0.52 -1.0
5,618,108 + Psyr_4738 0.52 +0.0
5,618,109 - Psyr_4738 0.53 +0.4
5,618,109 - Psyr_4738 0.53 -0.2
5,618,109 - Psyr_4738 0.53 -1.2
5,618,109 - Psyr_4738 0.53 +1.6
5,618,109 - Psyr_4738 0.53 -0.9
5,618,109 - Psyr_4738 0.53 -0.4
5,618,109 - Psyr_4738 0.53 +0.9
5,618,109 - Psyr_4738 0.53 +0.9
5,618,109 - Psyr_4738 0.53 +0.0
5,618,109 - Psyr_4738 0.53 +2.5
5,618,109 - Psyr_4738 0.53 -0.5
5,618,109 - Psyr_4738 0.53 -0.6
5,618,109 - Psyr_4738 0.53 -0.0
5,618,109 - Psyr_4738 0.53 -3.0
5,618,109 - Psyr_4738 0.53 +0.3
5,618,109 - Psyr_4738 0.53 -2.5
5,618,109 - Psyr_4738 0.53 +1.5
5,618,109 - Psyr_4738 0.53 +0.3
5,618,109 - Psyr_4738 0.53 +1.0
5,618,109 - Psyr_4738 0.53 +1.9
5,618,109 - Psyr_4738 0.53 +0.2
5,618,109 - Psyr_4738 0.53 +0.3
5,618,109 - Psyr_4738 0.53 -0.4
5,618,139 + Psyr_4738 0.55 -0.4
5,618,140 - Psyr_4738 0.55 +0.3
5,618,140 - Psyr_4738 0.55 -0.9
5,618,273 + Psyr_4738 0.68 -0.6
5,618,273 + Psyr_4738 0.68 +1.9
5,618,273 + Psyr_4738 0.68 +0.6
5,618,273 + Psyr_4738 0.68 +1.3
5,618,273 + Psyr_4738 0.68 +0.6
5,618,273 + Psyr_4738 0.68 -0.1
5,618,273 + Psyr_4738 0.68 +3.8
5,618,273 + Psyr_4738 0.68 +1.0
5,618,273 + Psyr_4738 0.68 -0.1
5,618,273 + Psyr_4738 0.68 +0.6
5,618,273 + Psyr_4738 0.68 -1.3
5,618,273 + Psyr_4738 0.68 +2.6
5,618,273 + Psyr_4738 0.68 +1.3
5,618,273 + Psyr_4738 0.68 +2.9
5,618,274 - Psyr_4738 0.68 -1.3
5,618,274 - Psyr_4738 0.68 +0.7
5,618,274 - Psyr_4738 0.68 +0.7
5,618,274 - Psyr_4738 0.68 +0.9
5,618,274 - Psyr_4738 0.68 -0.5
5,618,274 - Psyr_4738 0.68 -1.7
5,618,274 - Psyr_4738 0.68 +2.1
5,618,274 - Psyr_4738 0.68 -0.7
5,618,274 - Psyr_4738 0.68 -2.0
5,618,291 - Psyr_4738 0.70 -0.7
5,618,313 - Psyr_4738 0.72 -0.5
5,618,313 - Psyr_4738 0.72 -0.2

Or see this region's nucleotide sequence