Experiment: 4-hydroxybutyric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4736 and Psyr_4737 are separated by 109 nucleotides Psyr_4737 and Psyr_4738 are separated by 190 nucleotides
Psyr_4736: Psyr_4736 - conserved hypothetical protein, at 5,615,361 to 5,616,740
_4736
Psyr_4737: Psyr_4737 - dihydrofolate reductase, at 5,616,850 to 5,617,362
_4737
Psyr_4738: Psyr_4738 - conserved hypothetical protein, at 5,617,553 to 5,618,611
_4738
Position (kb)
5616
5617
5618 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 5616.350 kb on + strand, within Psyr_4736 at 5616.351 kb on - strand, within Psyr_4736 at 5616.775 kb on - strand at 5616.775 kb on - strand at 5617.441 kb on + strand at 5617.442 kb on - strand at 5617.442 kb on - strand at 5617.487 kb on - strand at 5617.487 kb on - strand at 5617.503 kb on + strand at 5617.504 kb on - strand at 5617.504 kb on - strand at 5617.553 kb on - strand at 5617.700 kb on + strand, within Psyr_4738 at 5617.701 kb on - strand, within Psyr_4738 at 5617.763 kb on + strand, within Psyr_4738 at 5617.763 kb on + strand, within Psyr_4738 at 5617.763 kb on + strand, within Psyr_4738 at 5617.763 kb on + strand, within Psyr_4738 at 5617.763 kb on + strand, within Psyr_4738 at 5617.763 kb on + strand, within Psyr_4738 at 5617.763 kb on + strand, within Psyr_4738 at 5617.764 kb on - strand, within Psyr_4738 at 5617.865 kb on + strand, within Psyr_4738 at 5617.865 kb on + strand, within Psyr_4738 at 5617.865 kb on + strand, within Psyr_4738 at 5617.865 kb on + strand, within Psyr_4738 at 5617.866 kb on - strand, within Psyr_4738 at 5617.866 kb on - strand, within Psyr_4738 at 5617.866 kb on - strand, within Psyr_4738 at 5617.868 kb on + strand, within Psyr_4738 at 5617.868 kb on + strand, within Psyr_4738 at 5617.868 kb on + strand, within Psyr_4738 at 5617.868 kb on + strand, within Psyr_4738 at 5617.869 kb on - strand, within Psyr_4738 at 5617.869 kb on - strand, within Psyr_4738 at 5617.869 kb on - strand, within Psyr_4738 at 5617.869 kb on - strand, within Psyr_4738 at 5617.869 kb on - strand, within Psyr_4738 at 5617.869 kb on - strand, within Psyr_4738 at 5617.869 kb on - strand, within Psyr_4738 at 5617.869 kb on - strand, within Psyr_4738 at 5617.869 kb on - strand, within Psyr_4738 at 5617.869 kb on - strand, within Psyr_4738 at 5617.871 kb on + strand, within Psyr_4738 at 5617.871 kb on + strand, within Psyr_4738 at 5617.871 kb on + strand, within Psyr_4738 at 5617.872 kb on - strand, within Psyr_4738 at 5617.872 kb on - strand, within Psyr_4738 at 5617.887 kb on + strand, within Psyr_4738 at 5617.887 kb on + strand, within Psyr_4738 at 5617.887 kb on + strand, within Psyr_4738 at 5617.887 kb on + strand, within Psyr_4738 at 5617.888 kb on - strand, within Psyr_4738 at 5617.959 kb on - strand, within Psyr_4738 at 5618.003 kb on + strand, within Psyr_4738 at 5618.003 kb on + strand, within Psyr_4738 at 5618.004 kb on - strand, within Psyr_4738 at 5618.004 kb on - strand, within Psyr_4738 at 5618.004 kb on - strand, within Psyr_4738 at 5618.006 kb on + strand, within Psyr_4738 at 5618.006 kb on + strand, within Psyr_4738 at 5618.006 kb on + strand, within Psyr_4738 at 5618.007 kb on - strand, within Psyr_4738 at 5618.075 kb on + strand, within Psyr_4738 at 5618.075 kb on + strand, within Psyr_4738 at 5618.076 kb on - strand, within Psyr_4738 at 5618.076 kb on - strand, within Psyr_4738 at 5618.076 kb on - strand, within Psyr_4738 at 5618.076 kb on - strand, within Psyr_4738 at 5618.108 kb on + strand, within Psyr_4738 at 5618.108 kb on + strand, within Psyr_4738 at 5618.108 kb on + strand, within Psyr_4738 at 5618.108 kb on + strand, within Psyr_4738 at 5618.108 kb on + strand, within Psyr_4738 at 5618.108 kb on + strand, within Psyr_4738 at 5618.108 kb on + strand, within Psyr_4738 at 5618.108 kb on + strand, within Psyr_4738 at 5618.108 kb on + strand, within Psyr_4738 at 5618.108 kb on + strand, within Psyr_4738 at 5618.108 kb on + strand, within Psyr_4738 at 5618.108 kb on + strand, within Psyr_4738 at 5618.108 kb on + strand, within Psyr_4738 at 5618.108 kb on + strand, within Psyr_4738 at 5618.108 kb on + strand, within Psyr_4738 at 5618.108 kb on + strand, within Psyr_4738 at 5618.108 kb on + strand, within Psyr_4738 at 5618.108 kb on + strand, within Psyr_4738 at 5618.108 kb on + strand, within Psyr_4738 at 5618.109 kb on - strand, within Psyr_4738 at 5618.109 kb on - strand, within Psyr_4738 at 5618.109 kb on - strand, within Psyr_4738 at 5618.109 kb on - strand, within Psyr_4738 at 5618.109 kb on - strand, within Psyr_4738 at 5618.109 kb on - strand, within Psyr_4738 at 5618.109 kb on - strand, within Psyr_4738 at 5618.109 kb on - strand, within Psyr_4738 at 5618.109 kb on - strand, within Psyr_4738 at 5618.109 kb on - strand, within Psyr_4738 at 5618.109 kb on - strand, within Psyr_4738 at 5618.109 kb on - strand, within Psyr_4738 at 5618.109 kb on - strand, within Psyr_4738 at 5618.109 kb on - strand, within Psyr_4738 at 5618.109 kb on - strand, within Psyr_4738 at 5618.109 kb on - strand, within Psyr_4738 at 5618.109 kb on - strand, within Psyr_4738 at 5618.109 kb on - strand, within Psyr_4738 at 5618.109 kb on - strand, within Psyr_4738 at 5618.109 kb on - strand, within Psyr_4738 at 5618.109 kb on - strand, within Psyr_4738 at 5618.109 kb on - strand, within Psyr_4738 at 5618.109 kb on - strand, within Psyr_4738 at 5618.139 kb on + strand, within Psyr_4738 at 5618.140 kb on - strand, within Psyr_4738 at 5618.140 kb on - strand, within Psyr_4738 at 5618.273 kb on + strand, within Psyr_4738 at 5618.273 kb on + strand, within Psyr_4738 at 5618.273 kb on + strand, within Psyr_4738 at 5618.273 kb on + strand, within Psyr_4738 at 5618.273 kb on + strand, within Psyr_4738 at 5618.273 kb on + strand, within Psyr_4738 at 5618.273 kb on + strand, within Psyr_4738 at 5618.273 kb on + strand, within Psyr_4738 at 5618.273 kb on + strand, within Psyr_4738 at 5618.273 kb on + strand, within Psyr_4738 at 5618.273 kb on + strand, within Psyr_4738 at 5618.273 kb on + strand, within Psyr_4738 at 5618.273 kb on + strand, within Psyr_4738 at 5618.273 kb on + strand, within Psyr_4738 at 5618.274 kb on - strand, within Psyr_4738 at 5618.274 kb on - strand, within Psyr_4738 at 5618.274 kb on - strand, within Psyr_4738 at 5618.274 kb on - strand, within Psyr_4738 at 5618.274 kb on - strand, within Psyr_4738 at 5618.274 kb on - strand, within Psyr_4738 at 5618.274 kb on - strand, within Psyr_4738 at 5618.274 kb on - strand, within Psyr_4738 at 5618.274 kb on - strand, within Psyr_4738 at 5618.291 kb on - strand, within Psyr_4738 at 5618.313 kb on - strand, within Psyr_4738 at 5618.313 kb on - strand, within Psyr_4738
Per-strain Table
Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C) remove 5,616,350 + Psyr_4736 0.72 +0.2 5,616,351 - Psyr_4736 0.72 +0.3 5,616,775 - +1.0 5,616,775 - +2.6 5,617,441 + +1.1 5,617,442 - -1.3 5,617,442 - -0.3 5,617,487 - +0.9 5,617,487 - -1.3 5,617,503 + +1.2 5,617,504 - -2.3 5,617,504 - -0.4 5,617,553 - -0.7 5,617,700 + Psyr_4738 0.14 -0.2 5,617,701 - Psyr_4738 0.14 -0.0 5,617,763 + Psyr_4738 0.20 +0.3 5,617,763 + Psyr_4738 0.20 +1.1 5,617,763 + Psyr_4738 0.20 +0.8 5,617,763 + Psyr_4738 0.20 +1.3 5,617,763 + Psyr_4738 0.20 -0.9 5,617,763 + Psyr_4738 0.20 -2.7 5,617,763 + Psyr_4738 0.20 -0.9 5,617,764 - Psyr_4738 0.20 +0.2 5,617,865 + Psyr_4738 0.29 +0.3 5,617,865 + Psyr_4738 0.29 +0.0 5,617,865 + Psyr_4738 0.29 -0.4 5,617,865 + Psyr_4738 0.29 +0.1 5,617,866 - Psyr_4738 0.30 -1.0 5,617,866 - Psyr_4738 0.30 +0.5 5,617,866 - Psyr_4738 0.30 +1.9 5,617,868 + Psyr_4738 0.30 -0.7 5,617,868 + Psyr_4738 0.30 +0.8 5,617,868 + Psyr_4738 0.30 -0.3 5,617,868 + Psyr_4738 0.30 +0.7 5,617,869 - Psyr_4738 0.30 -0.2 5,617,869 - Psyr_4738 0.30 +1.3 5,617,869 - Psyr_4738 0.30 +1.3 5,617,869 - Psyr_4738 0.30 -0.4 5,617,869 - Psyr_4738 0.30 -0.9 5,617,869 - Psyr_4738 0.30 +1.8 5,617,869 - Psyr_4738 0.30 +1.9 5,617,869 - Psyr_4738 0.30 +0.9 5,617,869 - Psyr_4738 0.30 +3.9 5,617,869 - Psyr_4738 0.30 +0.1 5,617,871 + Psyr_4738 0.30 -1.3 5,617,871 + Psyr_4738 0.30 +0.3 5,617,871 + Psyr_4738 0.30 -0.6 5,617,872 - Psyr_4738 0.30 +2.0 5,617,872 - Psyr_4738 0.30 +0.3 5,617,887 + Psyr_4738 0.32 -0.2 5,617,887 + Psyr_4738 0.32 +2.6 5,617,887 + Psyr_4738 0.32 +1.3 5,617,887 + Psyr_4738 0.32 +0.7 5,617,888 - Psyr_4738 0.32 -2.5 5,617,959 - Psyr_4738 0.38 -1.9 5,618,003 + Psyr_4738 0.42 +1.9 5,618,003 + Psyr_4738 0.42 -0.7 5,618,004 - Psyr_4738 0.43 +0.7 5,618,004 - Psyr_4738 0.43 -0.2 5,618,004 - Psyr_4738 0.43 +0.9 5,618,006 + Psyr_4738 0.43 +1.6 5,618,006 + Psyr_4738 0.43 +1.2 5,618,006 + Psyr_4738 0.43 +1.7 5,618,007 - Psyr_4738 0.43 +0.3 5,618,075 + Psyr_4738 0.49 -0.5 5,618,075 + Psyr_4738 0.49 +0.7 5,618,076 - Psyr_4738 0.49 +0.3 5,618,076 - Psyr_4738 0.49 -0.3 5,618,076 - Psyr_4738 0.49 +0.9 5,618,076 - Psyr_4738 0.49 -0.0 5,618,108 + Psyr_4738 0.52 -0.0 5,618,108 + Psyr_4738 0.52 -0.8 5,618,108 + Psyr_4738 0.52 +0.3 5,618,108 + Psyr_4738 0.52 -0.7 5,618,108 + Psyr_4738 0.52 -1.2 5,618,108 + Psyr_4738 0.52 +0.9 5,618,108 + Psyr_4738 0.52 -0.4 5,618,108 + Psyr_4738 0.52 -1.2 5,618,108 + Psyr_4738 0.52 +0.4 5,618,108 + Psyr_4738 0.52 +0.0 5,618,108 + Psyr_4738 0.52 -1.2 5,618,108 + Psyr_4738 0.52 +0.4 5,618,108 + Psyr_4738 0.52 +1.6 5,618,108 + Psyr_4738 0.52 +1.1 5,618,108 + Psyr_4738 0.52 +0.3 5,618,108 + Psyr_4738 0.52 +2.2 5,618,108 + Psyr_4738 0.52 +2.2 5,618,108 + Psyr_4738 0.52 -1.0 5,618,108 + Psyr_4738 0.52 +0.0 5,618,109 - Psyr_4738 0.53 +0.4 5,618,109 - Psyr_4738 0.53 -0.2 5,618,109 - Psyr_4738 0.53 -1.2 5,618,109 - Psyr_4738 0.53 +1.6 5,618,109 - Psyr_4738 0.53 -0.9 5,618,109 - Psyr_4738 0.53 -0.4 5,618,109 - Psyr_4738 0.53 +0.9 5,618,109 - Psyr_4738 0.53 +0.9 5,618,109 - Psyr_4738 0.53 +0.0 5,618,109 - Psyr_4738 0.53 +2.5 5,618,109 - Psyr_4738 0.53 -0.5 5,618,109 - Psyr_4738 0.53 -0.6 5,618,109 - Psyr_4738 0.53 -0.0 5,618,109 - Psyr_4738 0.53 -3.0 5,618,109 - Psyr_4738 0.53 +0.3 5,618,109 - Psyr_4738 0.53 -2.5 5,618,109 - Psyr_4738 0.53 +1.5 5,618,109 - Psyr_4738 0.53 +0.3 5,618,109 - Psyr_4738 0.53 +1.0 5,618,109 - Psyr_4738 0.53 +1.9 5,618,109 - Psyr_4738 0.53 +0.2 5,618,109 - Psyr_4738 0.53 +0.3 5,618,109 - Psyr_4738 0.53 -0.4 5,618,139 + Psyr_4738 0.55 -0.4 5,618,140 - Psyr_4738 0.55 +0.3 5,618,140 - Psyr_4738 0.55 -0.9 5,618,273 + Psyr_4738 0.68 -0.6 5,618,273 + Psyr_4738 0.68 +1.9 5,618,273 + Psyr_4738 0.68 +0.6 5,618,273 + Psyr_4738 0.68 +1.3 5,618,273 + Psyr_4738 0.68 +0.6 5,618,273 + Psyr_4738 0.68 -0.1 5,618,273 + Psyr_4738 0.68 +3.8 5,618,273 + Psyr_4738 0.68 +1.0 5,618,273 + Psyr_4738 0.68 -0.1 5,618,273 + Psyr_4738 0.68 +0.6 5,618,273 + Psyr_4738 0.68 -1.3 5,618,273 + Psyr_4738 0.68 +2.6 5,618,273 + Psyr_4738 0.68 +1.3 5,618,273 + Psyr_4738 0.68 +2.9 5,618,274 - Psyr_4738 0.68 -1.3 5,618,274 - Psyr_4738 0.68 +0.7 5,618,274 - Psyr_4738 0.68 +0.7 5,618,274 - Psyr_4738 0.68 +0.9 5,618,274 - Psyr_4738 0.68 -0.5 5,618,274 - Psyr_4738 0.68 -1.7 5,618,274 - Psyr_4738 0.68 +2.1 5,618,274 - Psyr_4738 0.68 -0.7 5,618,274 - Psyr_4738 0.68 -2.0 5,618,291 - Psyr_4738 0.70 -0.7 5,618,313 - Psyr_4738 0.72 -0.5 5,618,313 - Psyr_4738 0.72 -0.2
Or see this region's nucleotide sequence