Experiment: 4-hydroxybutyric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4711 and Psyr_4712 are separated by 258 nucleotides Psyr_4712 and Psyr_4713 are separated by 17 nucleotides
Psyr_4711: Psyr_4711 - Glycine betaine/L-proline transport ATP-binding subunit, at 5,581,994 to 5,583,172
_4711
Psyr_4712: Psyr_4712 - serine hydroxymethyltransferase, at 5,583,431 to 5,584,684
_4712
Psyr_4713: Psyr_4713 - Sarcosine oxidase, beta subunit, heterotetrameric, at 5,584,702 to 5,585,952
_4713
Position (kb)
5583
5584
5585 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 5582.738 kb on + strand, within Psyr_4711 at 5582.739 kb on - strand, within Psyr_4711 at 5582.780 kb on + strand, within Psyr_4711 at 5582.780 kb on + strand, within Psyr_4711 at 5582.780 kb on + strand, within Psyr_4711 at 5582.780 kb on + strand, within Psyr_4711 at 5582.781 kb on - strand, within Psyr_4711 at 5582.781 kb on - strand, within Psyr_4711 at 5582.781 kb on - strand, within Psyr_4711 at 5582.781 kb on - strand, within Psyr_4711 at 5582.781 kb on - strand, within Psyr_4711 at 5582.781 kb on - strand, within Psyr_4711 at 5582.803 kb on + strand, within Psyr_4711 at 5582.803 kb on + strand, within Psyr_4711 at 5582.803 kb on + strand, within Psyr_4711 at 5582.803 kb on + strand, within Psyr_4711 at 5582.803 kb on + strand, within Psyr_4711 at 5582.803 kb on + strand, within Psyr_4711 at 5582.803 kb on + strand, within Psyr_4711 at 5582.803 kb on + strand, within Psyr_4711 at 5582.804 kb on - strand, within Psyr_4711 at 5582.804 kb on - strand, within Psyr_4711 at 5582.804 kb on - strand, within Psyr_4711 at 5582.804 kb on - strand, within Psyr_4711 at 5582.804 kb on - strand, within Psyr_4711 at 5582.804 kb on - strand, within Psyr_4711 at 5582.804 kb on - strand, within Psyr_4711 at 5582.804 kb on - strand, within Psyr_4711 at 5582.804 kb on - strand, within Psyr_4711 at 5582.804 kb on - strand, within Psyr_4711 at 5582.845 kb on + strand, within Psyr_4711 at 5583.106 kb on + strand at 5583.140 kb on + strand at 5583.277 kb on - strand at 5583.329 kb on + strand at 5583.542 kb on + strand at 5583.542 kb on + strand at 5583.542 kb on + strand at 5583.542 kb on + strand at 5583.542 kb on + strand at 5583.542 kb on + strand at 5583.543 kb on - strand at 5583.543 kb on - strand at 5583.543 kb on - strand at 5583.543 kb on - strand at 5583.543 kb on - strand at 5583.543 kb on - strand at 5583.593 kb on + strand, within Psyr_4712 at 5583.593 kb on + strand, within Psyr_4712 at 5583.593 kb on + strand, within Psyr_4712 at 5583.620 kb on + strand, within Psyr_4712 at 5583.624 kb on - strand, within Psyr_4712 at 5583.698 kb on + strand, within Psyr_4712 at 5583.699 kb on - strand, within Psyr_4712 at 5583.747 kb on - strand, within Psyr_4712 at 5583.848 kb on + strand, within Psyr_4712 at 5583.848 kb on + strand, within Psyr_4712 at 5583.848 kb on + strand, within Psyr_4712 at 5583.849 kb on - strand, within Psyr_4712 at 5583.849 kb on - strand, within Psyr_4712 at 5583.849 kb on - strand, within Psyr_4712 at 5583.849 kb on - strand, within Psyr_4712 at 5583.851 kb on - strand, within Psyr_4712 at 5583.962 kb on + strand, within Psyr_4712 at 5584.019 kb on + strand, within Psyr_4712 at 5584.020 kb on - strand, within Psyr_4712 at 5584.020 kb on - strand, within Psyr_4712 at 5584.089 kb on - strand, within Psyr_4712 at 5584.098 kb on + strand, within Psyr_4712 at 5584.098 kb on + strand, within Psyr_4712 at 5584.098 kb on + strand, within Psyr_4712 at 5584.098 kb on + strand, within Psyr_4712 at 5584.098 kb on + strand, within Psyr_4712 at 5584.098 kb on + strand, within Psyr_4712 at 5584.098 kb on + strand, within Psyr_4712 at 5584.098 kb on + strand, within Psyr_4712 at 5584.099 kb on - strand, within Psyr_4712 at 5584.099 kb on - strand, within Psyr_4712 at 5584.099 kb on - strand, within Psyr_4712 at 5584.099 kb on - strand, within Psyr_4712 at 5584.099 kb on - strand, within Psyr_4712 at 5584.289 kb on + strand, within Psyr_4712 at 5584.290 kb on - strand, within Psyr_4712 at 5584.693 kb on + strand at 5584.711 kb on + strand at 5584.799 kb on - strand at 5584.799 kb on - strand at 5584.846 kb on + strand, within Psyr_4713 at 5584.846 kb on + strand, within Psyr_4713 at 5584.849 kb on + strand, within Psyr_4713 at 5584.849 kb on + strand, within Psyr_4713 at 5584.850 kb on - strand, within Psyr_4713 at 5584.850 kb on - strand, within Psyr_4713 at 5584.850 kb on - strand, within Psyr_4713 at 5584.951 kb on + strand, within Psyr_4713 at 5584.951 kb on + strand, within Psyr_4713 at 5584.952 kb on - strand, within Psyr_4713 at 5584.952 kb on - strand, within Psyr_4713 at 5584.952 kb on - strand, within Psyr_4713 at 5584.952 kb on - strand, within Psyr_4713 at 5584.978 kb on + strand, within Psyr_4713 at 5584.978 kb on + strand, within Psyr_4713 at 5584.979 kb on - strand, within Psyr_4713 at 5585.026 kb on + strand, within Psyr_4713 at 5585.026 kb on + strand, within Psyr_4713 at 5585.026 kb on + strand, within Psyr_4713 at 5585.026 kb on + strand, within Psyr_4713 at 5585.027 kb on - strand, within Psyr_4713 at 5585.027 kb on - strand, within Psyr_4713 at 5585.027 kb on - strand, within Psyr_4713 at 5585.027 kb on - strand, within Psyr_4713 at 5585.056 kb on + strand, within Psyr_4713 at 5585.056 kb on + strand, within Psyr_4713 at 5585.057 kb on - strand, within Psyr_4713 at 5585.057 kb on - strand, within Psyr_4713 at 5585.057 kb on - strand, within Psyr_4713 at 5585.548 kb on + strand, within Psyr_4713 at 5585.548 kb on + strand, within Psyr_4713 at 5585.549 kb on - strand, within Psyr_4713 at 5585.549 kb on - strand, within Psyr_4713
Per-strain Table
Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C) remove 5,582,738 + Psyr_4711 0.63 +1.3 5,582,739 - Psyr_4711 0.63 -1.4 5,582,780 + Psyr_4711 0.67 +1.9 5,582,780 + Psyr_4711 0.67 -0.2 5,582,780 + Psyr_4711 0.67 -0.1 5,582,780 + Psyr_4711 0.67 +2.4 5,582,781 - Psyr_4711 0.67 -3.2 5,582,781 - Psyr_4711 0.67 +1.3 5,582,781 - Psyr_4711 0.67 +0.8 5,582,781 - Psyr_4711 0.67 -0.4 5,582,781 - Psyr_4711 0.67 +0.6 5,582,781 - Psyr_4711 0.67 +1.0 5,582,803 + Psyr_4711 0.69 +1.2 5,582,803 + Psyr_4711 0.69 +2.9 5,582,803 + Psyr_4711 0.69 -0.4 5,582,803 + Psyr_4711 0.69 +0.7 5,582,803 + Psyr_4711 0.69 +0.3 5,582,803 + Psyr_4711 0.69 -1.4 5,582,803 + Psyr_4711 0.69 -0.0 5,582,803 + Psyr_4711 0.69 +0.7 5,582,804 - Psyr_4711 0.69 +2.1 5,582,804 - Psyr_4711 0.69 +0.3 5,582,804 - Psyr_4711 0.69 +1.2 5,582,804 - Psyr_4711 0.69 +0.6 5,582,804 - Psyr_4711 0.69 -0.7 5,582,804 - Psyr_4711 0.69 -1.0 5,582,804 - Psyr_4711 0.69 +1.3 5,582,804 - Psyr_4711 0.69 +0.4 5,582,804 - Psyr_4711 0.69 +0.3 5,582,804 - Psyr_4711 0.69 -0.9 5,582,845 + Psyr_4711 0.72 -0.2 5,583,106 + -1.3 5,583,140 + -0.3 5,583,277 - +1.3 5,583,329 + +0.3 5,583,542 + +0.5 5,583,542 + +0.4 5,583,542 + +1.9 5,583,542 + +0.5 5,583,542 + +4.1 5,583,542 + -2.9 5,583,543 - +1.1 5,583,543 - -0.5 5,583,543 - +0.9 5,583,543 - -0.3 5,583,543 - -0.7 5,583,543 - -0.5 5,583,593 + Psyr_4712 0.13 +1.9 5,583,593 + Psyr_4712 0.13 +0.4 5,583,593 + Psyr_4712 0.13 +1.6 5,583,620 + Psyr_4712 0.15 +0.3 5,583,624 - Psyr_4712 0.15 -1.4 5,583,698 + Psyr_4712 0.21 +0.6 5,583,699 - Psyr_4712 0.21 +0.3 5,583,747 - Psyr_4712 0.25 -0.0 5,583,848 + Psyr_4712 0.33 +0.4 5,583,848 + Psyr_4712 0.33 +0.7 5,583,848 + Psyr_4712 0.33 +0.7 5,583,849 - Psyr_4712 0.33 +0.9 5,583,849 - Psyr_4712 0.33 +0.1 5,583,849 - Psyr_4712 0.33 +1.2 5,583,849 - Psyr_4712 0.33 -0.3 5,583,851 - Psyr_4712 0.33 +0.1 5,583,962 + Psyr_4712 0.42 +1.7 5,584,019 + Psyr_4712 0.47 -1.7 5,584,020 - Psyr_4712 0.47 -1.7 5,584,020 - Psyr_4712 0.47 +0.9 5,584,089 - Psyr_4712 0.52 +0.0 5,584,098 + Psyr_4712 0.53 -0.0 5,584,098 + Psyr_4712 0.53 -0.5 5,584,098 + Psyr_4712 0.53 -0.7 5,584,098 + Psyr_4712 0.53 +0.1 5,584,098 + Psyr_4712 0.53 +2.3 5,584,098 + Psyr_4712 0.53 -0.3 5,584,098 + Psyr_4712 0.53 -0.3 5,584,098 + Psyr_4712 0.53 +0.9 5,584,099 - Psyr_4712 0.53 -0.4 5,584,099 - Psyr_4712 0.53 -0.2 5,584,099 - Psyr_4712 0.53 +1.3 5,584,099 - Psyr_4712 0.53 +0.8 5,584,099 - Psyr_4712 0.53 +0.9 5,584,289 + Psyr_4712 0.68 -1.1 5,584,290 - Psyr_4712 0.69 -0.1 5,584,693 + -0.3 5,584,711 + +0.2 5,584,799 - -1.7 5,584,799 - +0.3 5,584,846 + Psyr_4713 0.12 +0.3 5,584,846 + Psyr_4713 0.12 -0.4 5,584,849 + Psyr_4713 0.12 +1.1 5,584,849 + Psyr_4713 0.12 -0.3 5,584,850 - Psyr_4713 0.12 -2.7 5,584,850 - Psyr_4713 0.12 -0.0 5,584,850 - Psyr_4713 0.12 +0.2 5,584,951 + Psyr_4713 0.20 +1.5 5,584,951 + Psyr_4713 0.20 +0.4 5,584,952 - Psyr_4713 0.20 -0.4 5,584,952 - Psyr_4713 0.20 +1.3 5,584,952 - Psyr_4713 0.20 +0.1 5,584,952 - Psyr_4713 0.20 -1.3 5,584,978 + Psyr_4713 0.22 -1.6 5,584,978 + Psyr_4713 0.22 +1.4 5,584,979 - Psyr_4713 0.22 -1.4 5,585,026 + Psyr_4713 0.26 -0.2 5,585,026 + Psyr_4713 0.26 +0.1 5,585,026 + Psyr_4713 0.26 +0.3 5,585,026 + Psyr_4713 0.26 +0.3 5,585,027 - Psyr_4713 0.26 -1.8 5,585,027 - Psyr_4713 0.26 -0.1 5,585,027 - Psyr_4713 0.26 -0.5 5,585,027 - Psyr_4713 0.26 +0.6 5,585,056 + Psyr_4713 0.28 +1.0 5,585,056 + Psyr_4713 0.28 +0.3 5,585,057 - Psyr_4713 0.28 +0.3 5,585,057 - Psyr_4713 0.28 +0.0 5,585,057 - Psyr_4713 0.28 -0.9 5,585,548 + Psyr_4713 0.68 +1.6 5,585,548 + Psyr_4713 0.68 -2.0 5,585,549 - Psyr_4713 0.68 +1.1 5,585,549 - Psyr_4713 0.68 +1.5
Or see this region's nucleotide sequence