Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4712

Experiment: 4-hydroxybutyric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4711 and Psyr_4712 are separated by 258 nucleotidesPsyr_4712 and Psyr_4713 are separated by 17 nucleotides Psyr_4711: Psyr_4711 - Glycine betaine/L-proline transport ATP-binding subunit, at 5,581,994 to 5,583,172 _4711 Psyr_4712: Psyr_4712 - serine hydroxymethyltransferase, at 5,583,431 to 5,584,684 _4712 Psyr_4713: Psyr_4713 - Sarcosine oxidase, beta subunit, heterotetrameric, at 5,584,702 to 5,585,952 _4713 Position (kb) 5583 5584 5585Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5582.738 kb on + strand, within Psyr_4711at 5582.739 kb on - strand, within Psyr_4711at 5582.780 kb on + strand, within Psyr_4711at 5582.780 kb on + strand, within Psyr_4711at 5582.780 kb on + strand, within Psyr_4711at 5582.780 kb on + strand, within Psyr_4711at 5582.781 kb on - strand, within Psyr_4711at 5582.781 kb on - strand, within Psyr_4711at 5582.781 kb on - strand, within Psyr_4711at 5582.781 kb on - strand, within Psyr_4711at 5582.781 kb on - strand, within Psyr_4711at 5582.781 kb on - strand, within Psyr_4711at 5582.803 kb on + strand, within Psyr_4711at 5582.803 kb on + strand, within Psyr_4711at 5582.803 kb on + strand, within Psyr_4711at 5582.803 kb on + strand, within Psyr_4711at 5582.803 kb on + strand, within Psyr_4711at 5582.803 kb on + strand, within Psyr_4711at 5582.803 kb on + strand, within Psyr_4711at 5582.803 kb on + strand, within Psyr_4711at 5582.804 kb on - strand, within Psyr_4711at 5582.804 kb on - strand, within Psyr_4711at 5582.804 kb on - strand, within Psyr_4711at 5582.804 kb on - strand, within Psyr_4711at 5582.804 kb on - strand, within Psyr_4711at 5582.804 kb on - strand, within Psyr_4711at 5582.804 kb on - strand, within Psyr_4711at 5582.804 kb on - strand, within Psyr_4711at 5582.804 kb on - strand, within Psyr_4711at 5582.804 kb on - strand, within Psyr_4711at 5582.845 kb on + strand, within Psyr_4711at 5583.106 kb on + strandat 5583.140 kb on + strandat 5583.277 kb on - strandat 5583.329 kb on + strandat 5583.542 kb on + strandat 5583.542 kb on + strandat 5583.542 kb on + strandat 5583.542 kb on + strandat 5583.542 kb on + strandat 5583.542 kb on + strandat 5583.543 kb on - strandat 5583.543 kb on - strandat 5583.543 kb on - strandat 5583.543 kb on - strandat 5583.543 kb on - strandat 5583.543 kb on - strandat 5583.593 kb on + strand, within Psyr_4712at 5583.593 kb on + strand, within Psyr_4712at 5583.593 kb on + strand, within Psyr_4712at 5583.620 kb on + strand, within Psyr_4712at 5583.624 kb on - strand, within Psyr_4712at 5583.698 kb on + strand, within Psyr_4712at 5583.699 kb on - strand, within Psyr_4712at 5583.747 kb on - strand, within Psyr_4712at 5583.848 kb on + strand, within Psyr_4712at 5583.848 kb on + strand, within Psyr_4712at 5583.848 kb on + strand, within Psyr_4712at 5583.849 kb on - strand, within Psyr_4712at 5583.849 kb on - strand, within Psyr_4712at 5583.849 kb on - strand, within Psyr_4712at 5583.849 kb on - strand, within Psyr_4712at 5583.851 kb on - strand, within Psyr_4712at 5583.962 kb on + strand, within Psyr_4712at 5584.019 kb on + strand, within Psyr_4712at 5584.020 kb on - strand, within Psyr_4712at 5584.020 kb on - strand, within Psyr_4712at 5584.089 kb on - strand, within Psyr_4712at 5584.098 kb on + strand, within Psyr_4712at 5584.098 kb on + strand, within Psyr_4712at 5584.098 kb on + strand, within Psyr_4712at 5584.098 kb on + strand, within Psyr_4712at 5584.098 kb on + strand, within Psyr_4712at 5584.098 kb on + strand, within Psyr_4712at 5584.098 kb on + strand, within Psyr_4712at 5584.098 kb on + strand, within Psyr_4712at 5584.099 kb on - strand, within Psyr_4712at 5584.099 kb on - strand, within Psyr_4712at 5584.099 kb on - strand, within Psyr_4712at 5584.099 kb on - strand, within Psyr_4712at 5584.099 kb on - strand, within Psyr_4712at 5584.289 kb on + strand, within Psyr_4712at 5584.290 kb on - strand, within Psyr_4712at 5584.693 kb on + strandat 5584.711 kb on + strandat 5584.799 kb on - strandat 5584.799 kb on - strandat 5584.846 kb on + strand, within Psyr_4713at 5584.846 kb on + strand, within Psyr_4713at 5584.849 kb on + strand, within Psyr_4713at 5584.849 kb on + strand, within Psyr_4713at 5584.850 kb on - strand, within Psyr_4713at 5584.850 kb on - strand, within Psyr_4713at 5584.850 kb on - strand, within Psyr_4713at 5584.951 kb on + strand, within Psyr_4713at 5584.951 kb on + strand, within Psyr_4713at 5584.952 kb on - strand, within Psyr_4713at 5584.952 kb on - strand, within Psyr_4713at 5584.952 kb on - strand, within Psyr_4713at 5584.952 kb on - strand, within Psyr_4713at 5584.978 kb on + strand, within Psyr_4713at 5584.978 kb on + strand, within Psyr_4713at 5584.979 kb on - strand, within Psyr_4713at 5585.026 kb on + strand, within Psyr_4713at 5585.026 kb on + strand, within Psyr_4713at 5585.026 kb on + strand, within Psyr_4713at 5585.026 kb on + strand, within Psyr_4713at 5585.027 kb on - strand, within Psyr_4713at 5585.027 kb on - strand, within Psyr_4713at 5585.027 kb on - strand, within Psyr_4713at 5585.027 kb on - strand, within Psyr_4713at 5585.056 kb on + strand, within Psyr_4713at 5585.056 kb on + strand, within Psyr_4713at 5585.057 kb on - strand, within Psyr_4713at 5585.057 kb on - strand, within Psyr_4713at 5585.057 kb on - strand, within Psyr_4713at 5585.548 kb on + strand, within Psyr_4713at 5585.548 kb on + strand, within Psyr_4713at 5585.549 kb on - strand, within Psyr_4713at 5585.549 kb on - strand, within Psyr_4713

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C)
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5,582,738 + Psyr_4711 0.63 +1.3
5,582,739 - Psyr_4711 0.63 -1.4
5,582,780 + Psyr_4711 0.67 +1.9
5,582,780 + Psyr_4711 0.67 -0.2
5,582,780 + Psyr_4711 0.67 -0.1
5,582,780 + Psyr_4711 0.67 +2.4
5,582,781 - Psyr_4711 0.67 -3.2
5,582,781 - Psyr_4711 0.67 +1.3
5,582,781 - Psyr_4711 0.67 +0.8
5,582,781 - Psyr_4711 0.67 -0.4
5,582,781 - Psyr_4711 0.67 +0.6
5,582,781 - Psyr_4711 0.67 +1.0
5,582,803 + Psyr_4711 0.69 +1.2
5,582,803 + Psyr_4711 0.69 +2.9
5,582,803 + Psyr_4711 0.69 -0.4
5,582,803 + Psyr_4711 0.69 +0.7
5,582,803 + Psyr_4711 0.69 +0.3
5,582,803 + Psyr_4711 0.69 -1.4
5,582,803 + Psyr_4711 0.69 -0.0
5,582,803 + Psyr_4711 0.69 +0.7
5,582,804 - Psyr_4711 0.69 +2.1
5,582,804 - Psyr_4711 0.69 +0.3
5,582,804 - Psyr_4711 0.69 +1.2
5,582,804 - Psyr_4711 0.69 +0.6
5,582,804 - Psyr_4711 0.69 -0.7
5,582,804 - Psyr_4711 0.69 -1.0
5,582,804 - Psyr_4711 0.69 +1.3
5,582,804 - Psyr_4711 0.69 +0.4
5,582,804 - Psyr_4711 0.69 +0.3
5,582,804 - Psyr_4711 0.69 -0.9
5,582,845 + Psyr_4711 0.72 -0.2
5,583,106 + -1.3
5,583,140 + -0.3
5,583,277 - +1.3
5,583,329 + +0.3
5,583,542 + +0.5
5,583,542 + +0.4
5,583,542 + +1.9
5,583,542 + +0.5
5,583,542 + +4.1
5,583,542 + -2.9
5,583,543 - +1.1
5,583,543 - -0.5
5,583,543 - +0.9
5,583,543 - -0.3
5,583,543 - -0.7
5,583,543 - -0.5
5,583,593 + Psyr_4712 0.13 +1.9
5,583,593 + Psyr_4712 0.13 +0.4
5,583,593 + Psyr_4712 0.13 +1.6
5,583,620 + Psyr_4712 0.15 +0.3
5,583,624 - Psyr_4712 0.15 -1.4
5,583,698 + Psyr_4712 0.21 +0.6
5,583,699 - Psyr_4712 0.21 +0.3
5,583,747 - Psyr_4712 0.25 -0.0
5,583,848 + Psyr_4712 0.33 +0.4
5,583,848 + Psyr_4712 0.33 +0.7
5,583,848 + Psyr_4712 0.33 +0.7
5,583,849 - Psyr_4712 0.33 +0.9
5,583,849 - Psyr_4712 0.33 +0.1
5,583,849 - Psyr_4712 0.33 +1.2
5,583,849 - Psyr_4712 0.33 -0.3
5,583,851 - Psyr_4712 0.33 +0.1
5,583,962 + Psyr_4712 0.42 +1.7
5,584,019 + Psyr_4712 0.47 -1.7
5,584,020 - Psyr_4712 0.47 -1.7
5,584,020 - Psyr_4712 0.47 +0.9
5,584,089 - Psyr_4712 0.52 +0.0
5,584,098 + Psyr_4712 0.53 -0.0
5,584,098 + Psyr_4712 0.53 -0.5
5,584,098 + Psyr_4712 0.53 -0.7
5,584,098 + Psyr_4712 0.53 +0.1
5,584,098 + Psyr_4712 0.53 +2.3
5,584,098 + Psyr_4712 0.53 -0.3
5,584,098 + Psyr_4712 0.53 -0.3
5,584,098 + Psyr_4712 0.53 +0.9
5,584,099 - Psyr_4712 0.53 -0.4
5,584,099 - Psyr_4712 0.53 -0.2
5,584,099 - Psyr_4712 0.53 +1.3
5,584,099 - Psyr_4712 0.53 +0.8
5,584,099 - Psyr_4712 0.53 +0.9
5,584,289 + Psyr_4712 0.68 -1.1
5,584,290 - Psyr_4712 0.69 -0.1
5,584,693 + -0.3
5,584,711 + +0.2
5,584,799 - -1.7
5,584,799 - +0.3
5,584,846 + Psyr_4713 0.12 +0.3
5,584,846 + Psyr_4713 0.12 -0.4
5,584,849 + Psyr_4713 0.12 +1.1
5,584,849 + Psyr_4713 0.12 -0.3
5,584,850 - Psyr_4713 0.12 -2.7
5,584,850 - Psyr_4713 0.12 -0.0
5,584,850 - Psyr_4713 0.12 +0.2
5,584,951 + Psyr_4713 0.20 +1.5
5,584,951 + Psyr_4713 0.20 +0.4
5,584,952 - Psyr_4713 0.20 -0.4
5,584,952 - Psyr_4713 0.20 +1.3
5,584,952 - Psyr_4713 0.20 +0.1
5,584,952 - Psyr_4713 0.20 -1.3
5,584,978 + Psyr_4713 0.22 -1.6
5,584,978 + Psyr_4713 0.22 +1.4
5,584,979 - Psyr_4713 0.22 -1.4
5,585,026 + Psyr_4713 0.26 -0.2
5,585,026 + Psyr_4713 0.26 +0.1
5,585,026 + Psyr_4713 0.26 +0.3
5,585,026 + Psyr_4713 0.26 +0.3
5,585,027 - Psyr_4713 0.26 -1.8
5,585,027 - Psyr_4713 0.26 -0.1
5,585,027 - Psyr_4713 0.26 -0.5
5,585,027 - Psyr_4713 0.26 +0.6
5,585,056 + Psyr_4713 0.28 +1.0
5,585,056 + Psyr_4713 0.28 +0.3
5,585,057 - Psyr_4713 0.28 +0.3
5,585,057 - Psyr_4713 0.28 +0.0
5,585,057 - Psyr_4713 0.28 -0.9
5,585,548 + Psyr_4713 0.68 +1.6
5,585,548 + Psyr_4713 0.68 -2.0
5,585,549 - Psyr_4713 0.68 +1.1
5,585,549 - Psyr_4713 0.68 +1.5

Or see this region's nucleotide sequence