Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4660

Experiment: 4-hydroxybutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-hydroxybutyric (C)
5,520,534	+		Psyr_4659	0.84	+0.8
5,520,535	-		Psyr_4659	0.84	+1.8
5,520,616	-		Psyr_4659	0.89	+1.7
5,520,779	+				+0.1
5,520,779	+				+0.1
5,520,779	+				+2.3
5,520,779	+				+0.1
5,520,779	+				+0.7
5,520,779	+				-0.3
5,520,779	+				-1.2
5,520,779	+				+0.6
5,520,779	+				-1.7
5,520,779	+				+0.3
5,520,779	+				+0.8
5,520,779	+				+1.7
5,520,779	+				+0.3
5,520,779	+				+1.7
5,520,779	+				+0.3
5,520,779	+				+1.0
5,520,779	+				+1.1
5,520,779	+				+0.7
5,520,779	+				-0.7
5,520,779	+				-1.0
5,520,779	+				-0.9
5,520,779	+				-0.5
5,520,779	+				-0.3
5,520,779	+				-1.2
5,520,779	+				-0.7
5,520,779	+				-0.8
5,520,779	+				+0.3
5,520,779	+				-0.7
5,520,779	+				-0.6
5,520,779	+				+0.9
5,520,779	+				+0.3
5,520,779	+				-1.5
5,520,779	+				-1.3
5,520,779	+				-1.9
5,520,779	+				+0.5
5,520,780	-				+2.6
5,520,780	-				+1.0
5,520,780	-				+0.7
5,520,780	-				+1.1
5,520,780	-				-0.1
5,520,780	-				-0.6
5,520,780	-				-1.0
5,520,780	-				-0.3
5,520,780	-				+0.8
5,520,780	-				+1.0
5,520,780	-				-1.0
5,520,780	-				-0.3
5,520,780	-				-1.6
5,520,780	-				-1.5
5,520,780	-				+0.8
5,520,780	-				+0.3
5,520,780	-				+1.0
5,520,780	-				+0.8
5,520,780	-				+0.5
5,520,780	-				+0.6
5,520,780	-				-1.7
5,520,780	-				+1.1
5,520,780	-				-1.3
5,520,780	-				-2.3
5,520,780	-				-0.4
5,520,780	-				+1.8
5,520,780	-				-0.4
5,520,780	-				-0.2
5,520,780	-				+1.0
5,520,780	-				+0.9
5,520,780	-				+1.3
5,520,780	-				-2.3
5,520,780	-				+1.6
5,520,780	-				-0.3
5,520,780	-				+1.1
5,520,780	-				-1.2
5,520,780	-				-2.3
5,520,780	-				-1.1
5,520,780	-				-0.3
5,520,780	-				-1.0
5,520,781	+				-1.9
5,520,781	+				-1.0
5,520,781	+				+0.5
5,520,781	+				+0.7
5,520,781	+				+0.2
5,520,781	+				-0.1
5,520,781	+				+0.4
5,520,781	+				-0.5
5,520,781	+				+0.4
5,520,781	+				-1.3
5,520,781	+				+0.5
5,520,781	+				-2.7
5,520,781	+				+0.3
5,520,781	+				-0.1
5,520,781	+				-0.6
5,520,781	+				+0.5
5,520,781	+				+1.4
5,520,781	+				-0.2
5,520,781	+				-0.7
5,520,781	+				-0.8
5,520,781	+				-1.3
5,520,781	+				-0.2
5,520,781	+				-0.2
5,520,781	+				-0.7
5,520,781	+				+0.4
5,520,781	+				+0.0
5,520,781	+				+0.4
5,520,781	+				+1.9
5,520,781	+				-0.0
5,520,781	+				+1.4
5,520,781	+				+0.3
5,520,781	+				+1.5
5,520,781	+				+0.4
5,520,782	-				-1.0
5,520,782	-				+0.8
5,520,782	-				-1.1
5,520,782	-				-0.2
5,520,782	-				+2.1
5,520,782	-				+0.6
5,520,782	-				+0.4
5,520,782	-				-0.1
5,520,782	-				+1.4
5,520,782	-				-1.7
5,520,782	-				+0.7
5,520,782	-				+0.3
5,520,782	-				-0.3
5,520,782	-				+0.3
5,520,782	-				+0.3
5,520,782	-				+0.4
5,520,782	-				+0.5
5,520,782	-				+1.9
5,520,782	-				+0.5
5,520,782	-				-0.6
5,520,782	-				-2.1
5,520,782	-				-1.6
5,520,782	-				-0.1
5,520,782	-				-1.2
5,520,782	-				+0.8
5,520,782	-				+0.4
5,520,782	-				+0.3
5,520,782	-				-0.4
5,520,782	-				+0.8
5,520,782	-				+1.7
5,520,782	-				+3.3
5,520,782	-				+0.3
5,520,782	-				-0.1
5,520,783	+				+0.1
5,520,783	+				+1.1
5,520,783	+				-0.1
5,520,783	+				+1.4
5,520,783	+				-0.6
5,520,783	+				+2.1
5,520,783	+				-0.1
5,520,783	+				-0.8
5,520,783	+				-0.3
5,520,783	+				-2.2
5,520,783	+				-1.1
5,520,784	-				+0.8
5,520,784	-				+0.8
5,520,784	-				-0.1
5,520,784	-				+0.7
5,520,784	-				+2.6
5,520,784	-				+1.4
5,520,784	-				+0.3
5,520,784	-				+0.5
5,520,784	-				+0.3
5,520,784	-				+0.3
5,520,940	+				+0.0
5,520,993	+				-0.5
5,521,011	+				-0.3
5,521,011	+				+1.3
5,521,011	+				+1.4
5,521,012	-				-1.3
5,521,012	-				+0.5
5,521,029	+				+0.8
5,521,029	+				+0.5
5,521,029	+				-1.3
5,521,030	-				-1.3
5,521,053	+				+0.3
5,521,054	-				-0.2
5,521,054	-				-0.4
5,521,063	+				-2.7
5,521,064	-				-0.2
5,521,064	-				-0.0
5,521,064	-				-0.6
5,521,073	+				+0.6
5,521,073	+				+0.3
5,521,073	+				-1.0
5,521,073	+				+1.3
5,521,073	+				+1.6
5,521,073	+				+0.3
5,521,073	+				+0.9
5,521,073	+				+1.1
5,521,073	+				+1.0
5,521,073	+				+0.1
5,521,073	+				+1.5
5,521,073	+				+1.1
5,521,074	-				+3.3
5,521,074	-				-0.7
5,521,074	-				+0.9
5,521,074	-				+0.6
5,521,074	-				-0.1
5,521,074	-				-0.0
5,521,074	-				-0.4
5,521,074	-				+1.3
5,521,074	-				-0.4
5,521,074	-				-2.6
5,521,074	-				-0.2
5,521,074	-				-2.3
5,521,074	-				-0.6
5,521,074	-				+1.1
5,521,074	-				+2.8
5,521,074	-				+0.6
5,521,074	-				-1.5
5,521,083	+				-0.2
5,521,083	+				-0.4
5,521,084	-				-0.3
5,521,084	-				-0.6
5,521,084	-				-1.1
5,521,096	-				-1.0
5,521,096	-				+0.1
5,521,098	+				+0.7
5,521,098	+				-0.1
5,521,099	-				+1.1
5,521,112	+				+0.4
5,521,112	+				-0.5
5,521,113	-				-0.1
5,521,124	-				-2.3
5,521,124	-				-1.3
5,521,227	+				-1.3
5,521,231	+				-0.5
5,521,232	-				+0.4
5,521,246	+				+0.4
5,521,247	-				+0.3
5,521,293	+				-0.1
5,521,294	-				+2.4
5,521,294	-				+4.0
5,521,294	-				-0.6
5,521,294	-				-0.9
5,521,345	+				+2.6
5,521,345	+				+0.4
5,521,345	+				-0.7
5,521,346	-				+0.1
5,521,346	-				+0.4
5,521,346	-				-0.4
5,521,346	-				+1.3
5,521,346	-				+1.3
5,521,346	-				-0.0
5,521,346	-				-0.0
5,521,346	-				+1.3
5,521,346	-				-1.3
5,521,346	-				-1.0
5,521,466	-				-0.1
5,521,466	-				-1.3
5,521,801	+		Psyr_4660	0.36	-0.6
5,521,825	+		Psyr_4660	0.39	+0.7
5,521,826	-		Psyr_4660	0.39	+1.8
5,521,878	-		Psyr_4660	0.46	+0.3
5,522,030	+		Psyr_4660	0.64	-0.0
5,522,031	-		Psyr_4660	0.64	-0.3
5,522,091	+		Psyr_4660	0.72	+0.4
5,522,243	+				-0.7
5,522,263	+				-0.4
5,522,393	-				-0.9
5,522,428	+				+0.8
5,522,501	+				+1.5
5,522,501	+				+0.7
5,522,501	+				-0.1
5,522,501	+				-1.1
5,522,501	+				+1.4
5,522,501	+				-0.3
5,522,501	+				-0.3
5,522,502	-				-0.1
5,522,502	-				+0.2
5,522,502	-				+1.5
5,522,502	-				+0.3
5,523,022	+		Psyr_4661	0.88	-1.2
5,523,022	+		Psyr_4661	0.88	+0.8
5,523,022	+		Psyr_4661	0.88	-0.3
5,523,022	+		Psyr_4661	0.88	+0.4
5,523,022	+		Psyr_4661	0.88	+1.3
5,523,022	+		Psyr_4661	0.88	-0.4
5,523,022	+		Psyr_4661	0.88	-0.3
5,523,022	+		Psyr_4661	0.88	+0.1
5,523,023	-		Psyr_4661	0.88	+1.6
5,523,023	-		Psyr_4661	0.88	-0.0
5,523,023	-		Psyr_4661	0.88	-2.6
5,523,023	-		Psyr_4661	0.88	-0.7
5,523,023	-		Psyr_4661	0.88	-1.5
5,523,023	-		Psyr_4661	0.88	+0.6
5,523,023	-		Psyr_4661	0.88	+0.3
5,523,023	-		Psyr_4661	0.88	+0.3
5,523,023	-		Psyr_4661	0.88	+0.9
5,523,023	-		Psyr_4661	0.88	+0.5
5,523,023	-		Psyr_4661	0.88	+1.7
5,523,023	-		Psyr_4661	0.88	-1.0
5,523,023	-		Psyr_4661	0.88	-0.7
5,523,023	-		Psyr_4661	0.88	+0.5
5,523,215	-				-0.5
5,523,215	-				+1.1
5,523,215	-				+1.5
5,523,241	+				+0.3
5,523,241	+				-0.8
5,523,241	+				-1.1
5,523,241	+				-0.7
5,523,241	+				-0.2
5,523,241	+				+0.2
5,523,242	-				-0.0
5,523,242	-				+0.4
5,523,242	-				-2.6
5,523,242	-				+0.9
5,523,242	-				-0.4
5,523,242	-				+0.3
5,523,242	-				+0.4
5,523,242	-				+0.4
5,523,242	-				-0.7
5,523,242	-				+1.3
5,523,242	-				+0.1