Experiment: 4-hydroxybutyric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4659 and Psyr_4660 are separated by 725 nucleotides Psyr_4660 and Psyr_4661 are separated by 146 nucleotides Psyr_4661 and Psyr_4662 overlap by 4 nucleotides
Psyr_4659: Psyr_4659 - type III effector HopAB1, at 5,519,229 to 5,520,779
_4659
Psyr_4660: Psyr_4660 - Formate/nitrite transporter, at 5,521,505 to 5,522,320
_4660
Psyr_4661: Psyr_4661 - Phosphopantetheinyl transferase-like protein, at 5,522,467 to 5,523,099
_4661
Psyr_4662: Psyr_4662 - Amino acid adenylation, at 5,523,096 to 5,527,136
_4662
Position (kb)
5521
5522
5523 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 5520.534 kb on + strand, within Psyr_4659 at 5520.535 kb on - strand, within Psyr_4659 at 5520.616 kb on - strand, within Psyr_4659 at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.779 kb on + strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.780 kb on - strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.781 kb on + strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.782 kb on - strand at 5520.783 kb on + strand at 5520.783 kb on + strand at 5520.783 kb on + strand at 5520.783 kb on + strand at 5520.783 kb on + strand at 5520.783 kb on + strand at 5520.783 kb on + strand at 5520.783 kb on + strand at 5520.783 kb on + strand at 5520.783 kb on + strand at 5520.783 kb on + strand at 5520.784 kb on - strand at 5520.784 kb on - strand at 5520.784 kb on - strand at 5520.784 kb on - strand at 5520.784 kb on - strand at 5520.784 kb on - strand at 5520.784 kb on - strand at 5520.784 kb on - strand at 5520.784 kb on - strand at 5520.784 kb on - strand at 5520.940 kb on + strand at 5520.993 kb on + strand at 5521.011 kb on + strand at 5521.011 kb on + strand at 5521.011 kb on + strand at 5521.012 kb on - strand at 5521.012 kb on - strand at 5521.029 kb on + strand at 5521.029 kb on + strand at 5521.029 kb on + strand at 5521.030 kb on - strand at 5521.053 kb on + strand at 5521.054 kb on - strand at 5521.054 kb on - strand at 5521.063 kb on + strand at 5521.064 kb on - strand at 5521.064 kb on - strand at 5521.064 kb on - strand at 5521.073 kb on + strand at 5521.073 kb on + strand at 5521.073 kb on + strand at 5521.073 kb on + strand at 5521.073 kb on + strand at 5521.073 kb on + strand at 5521.073 kb on + strand at 5521.073 kb on + strand at 5521.073 kb on + strand at 5521.073 kb on + strand at 5521.073 kb on + strand at 5521.073 kb on + strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.074 kb on - strand at 5521.083 kb on + strand at 5521.083 kb on + strand at 5521.084 kb on - strand at 5521.084 kb on - strand at 5521.084 kb on - strand at 5521.096 kb on - strand at 5521.096 kb on - strand at 5521.098 kb on + strand at 5521.098 kb on + strand at 5521.099 kb on - strand at 5521.112 kb on + strand at 5521.112 kb on + strand at 5521.113 kb on - strand at 5521.124 kb on - strand at 5521.124 kb on - strand at 5521.227 kb on + strand at 5521.231 kb on + strand at 5521.232 kb on - strand at 5521.246 kb on + strand at 5521.247 kb on - strand at 5521.293 kb on + strand at 5521.294 kb on - strand at 5521.294 kb on - strand at 5521.294 kb on - strand at 5521.294 kb on - strand at 5521.345 kb on + strand at 5521.345 kb on + strand at 5521.345 kb on + strand at 5521.346 kb on - strand at 5521.346 kb on - strand at 5521.346 kb on - strand at 5521.346 kb on - strand at 5521.346 kb on - strand at 5521.346 kb on - strand at 5521.346 kb on - strand at 5521.346 kb on - strand at 5521.346 kb on - strand at 5521.346 kb on - strand at 5521.466 kb on - strand at 5521.466 kb on - strand at 5521.801 kb on + strand, within Psyr_4660 at 5521.825 kb on + strand, within Psyr_4660 at 5521.826 kb on - strand, within Psyr_4660 at 5521.878 kb on - strand, within Psyr_4660 at 5522.030 kb on + strand, within Psyr_4660 at 5522.031 kb on - strand, within Psyr_4660 at 5522.091 kb on + strand, within Psyr_4660 at 5522.243 kb on + strand at 5522.263 kb on + strand at 5522.393 kb on - strand at 5522.428 kb on + strand at 5522.501 kb on + strand at 5522.501 kb on + strand at 5522.501 kb on + strand at 5522.501 kb on + strand at 5522.501 kb on + strand at 5522.501 kb on + strand at 5522.501 kb on + strand at 5522.502 kb on - strand at 5522.502 kb on - strand at 5522.502 kb on - strand at 5522.502 kb on - strand at 5523.022 kb on + strand, within Psyr_4661 at 5523.022 kb on + strand, within Psyr_4661 at 5523.022 kb on + strand, within Psyr_4661 at 5523.022 kb on + strand, within Psyr_4661 at 5523.022 kb on + strand, within Psyr_4661 at 5523.022 kb on + strand, within Psyr_4661 at 5523.022 kb on + strand, within Psyr_4661 at 5523.022 kb on + strand, within Psyr_4661 at 5523.023 kb on - strand, within Psyr_4661 at 5523.023 kb on - strand, within Psyr_4661 at 5523.023 kb on - strand, within Psyr_4661 at 5523.023 kb on - strand, within Psyr_4661 at 5523.023 kb on - strand, within Psyr_4661 at 5523.023 kb on - strand, within Psyr_4661 at 5523.023 kb on - strand, within Psyr_4661 at 5523.023 kb on - strand, within Psyr_4661 at 5523.023 kb on - strand, within Psyr_4661 at 5523.023 kb on - strand, within Psyr_4661 at 5523.023 kb on - strand, within Psyr_4661 at 5523.023 kb on - strand, within Psyr_4661 at 5523.023 kb on - strand, within Psyr_4661 at 5523.023 kb on - strand, within Psyr_4661 at 5523.215 kb on - strand at 5523.215 kb on - strand at 5523.215 kb on - strand at 5523.241 kb on + strand at 5523.241 kb on + strand at 5523.241 kb on + strand at 5523.241 kb on + strand at 5523.241 kb on + strand at 5523.241 kb on + strand at 5523.242 kb on - strand at 5523.242 kb on - strand at 5523.242 kb on - strand at 5523.242 kb on - strand at 5523.242 kb on - strand at 5523.242 kb on - strand at 5523.242 kb on - strand at 5523.242 kb on - strand at 5523.242 kb on - strand at 5523.242 kb on - strand at 5523.242 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C) remove 5,520,534 + Psyr_4659 0.84 +0.8 5,520,535 - Psyr_4659 0.84 +1.8 5,520,616 - Psyr_4659 0.89 +1.7 5,520,779 + +0.1 5,520,779 + +0.1 5,520,779 + +2.3 5,520,779 + +0.1 5,520,779 + +0.7 5,520,779 + -0.3 5,520,779 + -1.2 5,520,779 + +0.6 5,520,779 + -1.7 5,520,779 + +0.3 5,520,779 + +0.8 5,520,779 + +1.7 5,520,779 + +0.3 5,520,779 + +1.7 5,520,779 + +0.3 5,520,779 + +1.0 5,520,779 + +1.1 5,520,779 + +0.7 5,520,779 + -0.7 5,520,779 + -1.0 5,520,779 + -0.9 5,520,779 + -0.5 5,520,779 + -0.3 5,520,779 + -1.2 5,520,779 + -0.7 5,520,779 + -0.8 5,520,779 + +0.3 5,520,779 + -0.7 5,520,779 + -0.6 5,520,779 + +0.9 5,520,779 + +0.3 5,520,779 + -1.5 5,520,779 + -1.3 5,520,779 + -1.9 5,520,779 + +0.5 5,520,780 - +2.6 5,520,780 - +1.0 5,520,780 - +0.7 5,520,780 - +1.1 5,520,780 - -0.1 5,520,780 - -0.6 5,520,780 - -1.0 5,520,780 - -0.3 5,520,780 - +0.8 5,520,780 - +1.0 5,520,780 - -1.0 5,520,780 - -0.3 5,520,780 - -1.6 5,520,780 - -1.5 5,520,780 - +0.8 5,520,780 - +0.3 5,520,780 - +1.0 5,520,780 - +0.8 5,520,780 - +0.5 5,520,780 - +0.6 5,520,780 - -1.7 5,520,780 - +1.1 5,520,780 - -1.3 5,520,780 - -2.3 5,520,780 - -0.4 5,520,780 - +1.8 5,520,780 - -0.4 5,520,780 - -0.2 5,520,780 - +1.0 5,520,780 - +0.9 5,520,780 - +1.3 5,520,780 - -2.3 5,520,780 - +1.6 5,520,780 - -0.3 5,520,780 - +1.1 5,520,780 - -1.2 5,520,780 - -2.3 5,520,780 - -1.1 5,520,780 - -0.3 5,520,780 - -1.0 5,520,781 + -1.9 5,520,781 + -1.0 5,520,781 + +0.5 5,520,781 + +0.7 5,520,781 + +0.2 5,520,781 + -0.1 5,520,781 + +0.4 5,520,781 + -0.5 5,520,781 + +0.4 5,520,781 + -1.3 5,520,781 + +0.5 5,520,781 + -2.7 5,520,781 + +0.3 5,520,781 + -0.1 5,520,781 + -0.6 5,520,781 + +0.5 5,520,781 + +1.4 5,520,781 + -0.2 5,520,781 + -0.7 5,520,781 + -0.8 5,520,781 + -1.3 5,520,781 + -0.2 5,520,781 + -0.2 5,520,781 + -0.7 5,520,781 + +0.4 5,520,781 + +0.0 5,520,781 + +0.4 5,520,781 + +1.9 5,520,781 + -0.0 5,520,781 + +1.4 5,520,781 + +0.3 5,520,781 + +1.5 5,520,781 + +0.4 5,520,782 - -1.0 5,520,782 - +0.8 5,520,782 - -1.1 5,520,782 - -0.2 5,520,782 - +2.1 5,520,782 - +0.6 5,520,782 - +0.4 5,520,782 - -0.1 5,520,782 - +1.4 5,520,782 - -1.7 5,520,782 - +0.7 5,520,782 - +0.3 5,520,782 - -0.3 5,520,782 - +0.3 5,520,782 - +0.3 5,520,782 - +0.4 5,520,782 - +0.5 5,520,782 - +1.9 5,520,782 - +0.5 5,520,782 - -0.6 5,520,782 - -2.1 5,520,782 - -1.6 5,520,782 - -0.1 5,520,782 - -1.2 5,520,782 - +0.8 5,520,782 - +0.4 5,520,782 - +0.3 5,520,782 - -0.4 5,520,782 - +0.8 5,520,782 - +1.7 5,520,782 - +3.3 5,520,782 - +0.3 5,520,782 - -0.1 5,520,783 + +0.1 5,520,783 + +1.1 5,520,783 + -0.1 5,520,783 + +1.4 5,520,783 + -0.6 5,520,783 + +2.1 5,520,783 + -0.1 5,520,783 + -0.8 5,520,783 + -0.3 5,520,783 + -2.2 5,520,783 + -1.1 5,520,784 - +0.8 5,520,784 - +0.8 5,520,784 - -0.1 5,520,784 - +0.7 5,520,784 - +2.6 5,520,784 - +1.4 5,520,784 - +0.3 5,520,784 - +0.5 5,520,784 - +0.3 5,520,784 - +0.3 5,520,940 + +0.0 5,520,993 + -0.5 5,521,011 + -0.3 5,521,011 + +1.3 5,521,011 + +1.4 5,521,012 - -1.3 5,521,012 - +0.5 5,521,029 + +0.8 5,521,029 + +0.5 5,521,029 + -1.3 5,521,030 - -1.3 5,521,053 + +0.3 5,521,054 - -0.2 5,521,054 - -0.4 5,521,063 + -2.7 5,521,064 - -0.2 5,521,064 - -0.0 5,521,064 - -0.6 5,521,073 + +0.6 5,521,073 + +0.3 5,521,073 + -1.0 5,521,073 + +1.3 5,521,073 + +1.6 5,521,073 + +0.3 5,521,073 + +0.9 5,521,073 + +1.1 5,521,073 + +1.0 5,521,073 + +0.1 5,521,073 + +1.5 5,521,073 + +1.1 5,521,074 - +3.3 5,521,074 - -0.7 5,521,074 - +0.9 5,521,074 - +0.6 5,521,074 - -0.1 5,521,074 - -0.0 5,521,074 - -0.4 5,521,074 - +1.3 5,521,074 - -0.4 5,521,074 - -2.6 5,521,074 - -0.2 5,521,074 - -2.3 5,521,074 - -0.6 5,521,074 - +1.1 5,521,074 - +2.8 5,521,074 - +0.6 5,521,074 - -1.5 5,521,083 + -0.2 5,521,083 + -0.4 5,521,084 - -0.3 5,521,084 - -0.6 5,521,084 - -1.1 5,521,096 - -1.0 5,521,096 - +0.1 5,521,098 + +0.7 5,521,098 + -0.1 5,521,099 - +1.1 5,521,112 + +0.4 5,521,112 + -0.5 5,521,113 - -0.1 5,521,124 - -2.3 5,521,124 - -1.3 5,521,227 + -1.3 5,521,231 + -0.5 5,521,232 - +0.4 5,521,246 + +0.4 5,521,247 - +0.3 5,521,293 + -0.1 5,521,294 - +2.4 5,521,294 - +4.0 5,521,294 - -0.6 5,521,294 - -0.9 5,521,345 + +2.6 5,521,345 + +0.4 5,521,345 + -0.7 5,521,346 - +0.1 5,521,346 - +0.4 5,521,346 - -0.4 5,521,346 - +1.3 5,521,346 - +1.3 5,521,346 - -0.0 5,521,346 - -0.0 5,521,346 - +1.3 5,521,346 - -1.3 5,521,346 - -1.0 5,521,466 - -0.1 5,521,466 - -1.3 5,521,801 + Psyr_4660 0.36 -0.6 5,521,825 + Psyr_4660 0.39 +0.7 5,521,826 - Psyr_4660 0.39 +1.8 5,521,878 - Psyr_4660 0.46 +0.3 5,522,030 + Psyr_4660 0.64 -0.0 5,522,031 - Psyr_4660 0.64 -0.3 5,522,091 + Psyr_4660 0.72 +0.4 5,522,243 + -0.7 5,522,263 + -0.4 5,522,393 - -0.9 5,522,428 + +0.8 5,522,501 + +1.5 5,522,501 + +0.7 5,522,501 + -0.1 5,522,501 + -1.1 5,522,501 + +1.4 5,522,501 + -0.3 5,522,501 + -0.3 5,522,502 - -0.1 5,522,502 - +0.2 5,522,502 - +1.5 5,522,502 - +0.3 5,523,022 + Psyr_4661 0.88 -1.2 5,523,022 + Psyr_4661 0.88 +0.8 5,523,022 + Psyr_4661 0.88 -0.3 5,523,022 + Psyr_4661 0.88 +0.4 5,523,022 + Psyr_4661 0.88 +1.3 5,523,022 + Psyr_4661 0.88 -0.4 5,523,022 + Psyr_4661 0.88 -0.3 5,523,022 + Psyr_4661 0.88 +0.1 5,523,023 - Psyr_4661 0.88 +1.6 5,523,023 - Psyr_4661 0.88 -0.0 5,523,023 - Psyr_4661 0.88 -2.6 5,523,023 - Psyr_4661 0.88 -0.7 5,523,023 - Psyr_4661 0.88 -1.5 5,523,023 - Psyr_4661 0.88 +0.6 5,523,023 - Psyr_4661 0.88 +0.3 5,523,023 - Psyr_4661 0.88 +0.3 5,523,023 - Psyr_4661 0.88 +0.9 5,523,023 - Psyr_4661 0.88 +0.5 5,523,023 - Psyr_4661 0.88 +1.7 5,523,023 - Psyr_4661 0.88 -1.0 5,523,023 - Psyr_4661 0.88 -0.7 5,523,023 - Psyr_4661 0.88 +0.5 5,523,215 - -0.5 5,523,215 - +1.1 5,523,215 - +1.5 5,523,241 + +0.3 5,523,241 + -0.8 5,523,241 + -1.1 5,523,241 + -0.7 5,523,241 + -0.2 5,523,241 + +0.2 5,523,242 - -0.0 5,523,242 - +0.4 5,523,242 - -2.6 5,523,242 - +0.9 5,523,242 - -0.4 5,523,242 - +0.3 5,523,242 - +0.4 5,523,242 - +0.4 5,523,242 - -0.7 5,523,242 - +1.3 5,523,242 - +0.1
Or see this region's nucleotide sequence