Experiment: 4-hydroxybutyric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4571 and Psyr_4572 are separated by 56 nucleotides Psyr_4572 and Psyr_4573 are separated by 103 nucleotides Psyr_4573 and Psyr_4574 are separated by 121 nucleotides Psyr_4574 and Psyr_4575 are separated by 69 nucleotides
Psyr_4571: Psyr_4571 - Protein of unknown function DUF805, at 5,435,070 to 5,435,984
_4571
Psyr_4572: Psyr_4572 - Short-chain dehydrogenase/reductase SDR, at 5,436,041 to 5,436,817
_4572
Psyr_4573: Psyr_4573 - Histidine triad (HIT) protein, at 5,436,921 to 5,437,259
_4573
Psyr_4574: Psyr_4574 - conserved hypothetical protein, at 5,437,381 to 5,438,028
_4574
Psyr_4575: Psyr_4575 - adenosylmethionine decarboxylase proenzyme, at 5,438,098 to 5,438,892
_4575
Position (kb) 5436
5437
5438 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5435.956 kb on + strand at 5435.956 kb on + strand at 5435.956 kb on + strand at 5435.956 kb on + strand at 5435.957 kb on - strand at 5435.957 kb on - strand at 5435.957 kb on - strand at 5435.957 kb on - strand at 5435.957 kb on - strand at 5435.957 kb on - strand at 5435.982 kb on + strand at 5435.982 kb on + strand at 5435.982 kb on + strand at 5435.982 kb on + strand at 5435.982 kb on + strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.983 kb on - strand at 5435.985 kb on + strand at 5435.985 kb on + strand at 5435.985 kb on + strand at 5435.985 kb on + strand at 5435.985 kb on + strand at 5435.986 kb on - strand at 5435.986 kb on - strand at 5435.986 kb on - strand at 5435.986 kb on - strand at 5435.986 kb on - strand at 5435.986 kb on - strand at 5435.986 kb on - strand at 5436.082 kb on - strand at 5436.441 kb on + strand, within Psyr_4572 at 5436.494 kb on + strand, within Psyr_4572 at 5436.494 kb on + strand, within Psyr_4572 at 5436.494 kb on + strand, within Psyr_4572 at 5436.494 kb on + strand, within Psyr_4572 at 5436.494 kb on + strand, within Psyr_4572 at 5436.494 kb on + strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.495 kb on - strand, within Psyr_4572 at 5436.497 kb on + strand, within Psyr_4572 at 5436.497 kb on + strand, within Psyr_4572 at 5436.497 kb on + strand, within Psyr_4572 at 5436.498 kb on - strand, within Psyr_4572 at 5436.498 kb on - strand, within Psyr_4572 at 5436.498 kb on - strand, within Psyr_4572 at 5436.498 kb on - strand, within Psyr_4572 at 5436.512 kb on + strand, within Psyr_4572 at 5436.512 kb on + strand, within Psyr_4572 at 5436.512 kb on + strand, within Psyr_4572 at 5436.512 kb on + strand, within Psyr_4572 at 5436.512 kb on + strand, within Psyr_4572 at 5436.513 kb on - strand, within Psyr_4572 at 5436.513 kb on - strand, within Psyr_4572 at 5436.513 kb on - strand, within Psyr_4572 at 5436.513 kb on - strand, within Psyr_4572 at 5436.513 kb on - strand, within Psyr_4572 at 5436.513 kb on - strand, within Psyr_4572 at 5436.671 kb on + strand, within Psyr_4572 at 5436.671 kb on + strand, within Psyr_4572 at 5436.671 kb on + strand, within Psyr_4572 at 5436.671 kb on + strand, within Psyr_4572 at 5436.671 kb on + strand, within Psyr_4572 at 5436.672 kb on - strand, within Psyr_4572 at 5436.672 kb on - strand, within Psyr_4572 at 5436.672 kb on - strand, within Psyr_4572 at 5436.672 kb on - strand, within Psyr_4572 at 5436.672 kb on - strand, within Psyr_4572 at 5436.672 kb on - strand, within Psyr_4572 at 5436.672 kb on - strand, within Psyr_4572 at 5436.674 kb on - strand, within Psyr_4572 at 5436.789 kb on - strand at 5436.803 kb on + strand at 5436.804 kb on - strand at 5436.804 kb on - strand at 5436.853 kb on + strand at 5436.854 kb on - strand at 5436.854 kb on - strand at 5436.854 kb on - strand at 5436.936 kb on - strand at 5436.975 kb on + strand, within Psyr_4573 at 5436.975 kb on + strand, within Psyr_4573 at 5436.975 kb on + strand, within Psyr_4573 at 5436.975 kb on + strand, within Psyr_4573 at 5436.975 kb on + strand, within Psyr_4573 at 5436.975 kb on + strand, within Psyr_4573 at 5436.975 kb on + strand, within Psyr_4573 at 5436.975 kb on + strand, within Psyr_4573 at 5436.975 kb on + strand, within Psyr_4573 at 5436.975 kb on + strand, within Psyr_4573 at 5436.975 kb on + strand, within Psyr_4573 at 5436.976 kb on - strand, within Psyr_4573 at 5436.976 kb on - strand, within Psyr_4573 at 5436.976 kb on - strand, within Psyr_4573 at 5436.976 kb on - strand, within Psyr_4573 at 5436.976 kb on - strand, within Psyr_4573 at 5436.976 kb on - strand, within Psyr_4573 at 5436.976 kb on - strand, within Psyr_4573 at 5436.976 kb on - strand, within Psyr_4573 at 5436.976 kb on - strand, within Psyr_4573 at 5436.976 kb on - strand, within Psyr_4573 at 5437.106 kb on + strand, within Psyr_4573 at 5437.106 kb on + strand, within Psyr_4573 at 5437.106 kb on + strand, within Psyr_4573 at 5437.106 kb on + strand, within Psyr_4573 at 5437.106 kb on + strand, within Psyr_4573 at 5437.106 kb on + strand, within Psyr_4573 at 5437.106 kb on + strand, within Psyr_4573 at 5437.106 kb on + strand, within Psyr_4573 at 5437.106 kb on + strand, within Psyr_4573 at 5437.106 kb on + strand, within Psyr_4573 at 5437.106 kb on + strand, within Psyr_4573 at 5437.106 kb on + strand, within Psyr_4573 at 5437.106 kb on + strand, within Psyr_4573 at 5437.106 kb on + strand, within Psyr_4573 at 5437.106 kb on + strand, within Psyr_4573 at 5437.106 kb on + strand, within Psyr_4573 at 5437.107 kb on - strand, within Psyr_4573 at 5437.107 kb on - strand, within Psyr_4573 at 5437.107 kb on - strand, within Psyr_4573 at 5437.107 kb on - strand, within Psyr_4573 at 5437.107 kb on - strand, within Psyr_4573 at 5437.107 kb on - strand, within Psyr_4573 at 5437.222 kb on + strand, within Psyr_4573 at 5437.222 kb on + strand, within Psyr_4573 at 5437.222 kb on + strand, within Psyr_4573 at 5437.222 kb on + strand, within Psyr_4573 at 5437.222 kb on + strand, within Psyr_4573 at 5437.222 kb on + strand, within Psyr_4573 at 5437.222 kb on + strand, within Psyr_4573 at 5437.222 kb on + strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5437.223 kb on - strand, within Psyr_4573 at 5438.036 kb on + strand at 5438.036 kb on + strand at 5438.036 kb on + strand at 5438.036 kb on + strand at 5438.036 kb on + strand at 5438.036 kb on + strand at 5438.036 kb on + strand at 5438.036 kb on + strand at 5438.036 kb on + strand at 5438.036 kb on + strand at 5438.036 kb on + strand at 5438.036 kb on + strand at 5438.036 kb on + strand at 5438.036 kb on + strand at 5438.036 kb on + strand at 5438.036 kb on + strand at 5438.036 kb on + strand at 5438.037 kb on - strand at 5438.037 kb on - strand at 5438.037 kb on - strand at 5438.037 kb on - strand at 5438.037 kb on - strand at 5438.037 kb on - strand at 5438.037 kb on - strand at 5438.037 kb on - strand at 5438.037 kb on - strand at 5438.037 kb on - strand at 5438.037 kb on - strand at 5438.038 kb on + strand at 5438.038 kb on + strand at 5438.038 kb on + strand at 5438.038 kb on + strand at 5438.038 kb on + strand at 5438.038 kb on + strand at 5438.038 kb on + strand at 5438.038 kb on + strand at 5438.038 kb on + strand at 5438.038 kb on + strand at 5438.038 kb on + strand at 5438.038 kb on + strand at 5438.038 kb on + strand at 5438.038 kb on + strand at 5438.038 kb on + strand at 5438.039 kb on - strand at 5438.039 kb on - strand at 5438.039 kb on - strand at 5438.039 kb on - strand at 5438.039 kb on - strand at 5438.039 kb on - strand at 5438.039 kb on - strand at 5438.039 kb on - strand at 5438.039 kb on - strand at 5438.039 kb on - strand at 5438.039 kb on - strand at 5438.039 kb on - strand at 5438.039 kb on - strand at 5438.039 kb on - strand at 5438.039 kb on - strand at 5438.039 kb on - strand at 5438.039 kb on - strand at 5438.039 kb on - strand at 5438.049 kb on + strand at 5438.079 kb on + strand at 5438.102 kb on - strand at 5438.210 kb on + strand, within Psyr_4575 at 5438.210 kb on + strand, within Psyr_4575 at 5438.210 kb on + strand, within Psyr_4575 at 5438.210 kb on + strand, within Psyr_4575 at 5438.210 kb on + strand, within Psyr_4575 at 5438.210 kb on + strand, within Psyr_4575 at 5438.210 kb on + strand, within Psyr_4575 at 5438.211 kb on - strand, within Psyr_4575 at 5438.211 kb on - strand, within Psyr_4575 at 5438.211 kb on - strand, within Psyr_4575 at 5438.211 kb on - strand, within Psyr_4575 at 5438.211 kb on - strand, within Psyr_4575 at 5438.211 kb on - strand, within Psyr_4575 at 5438.211 kb on - strand, within Psyr_4575 at 5438.211 kb on - strand, within Psyr_4575 at 5438.211 kb on - strand, within Psyr_4575
Per-strain Table
Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C) remove 5,435,956 + +0.9 5,435,956 + -0.9 5,435,956 + -1.5 5,435,956 + +0.1 5,435,957 - +0.1 5,435,957 - +0.0 5,435,957 - +1.1 5,435,957 - +0.7 5,435,957 - -0.6 5,435,957 - -0.6 5,435,982 + +0.6 5,435,982 + +0.2 5,435,982 + -0.0 5,435,982 + +0.8 5,435,982 + +0.4 5,435,983 - -1.8 5,435,983 - -0.3 5,435,983 - +1.3 5,435,983 - -1.4 5,435,983 - +2.2 5,435,983 - -0.1 5,435,983 - +0.4 5,435,983 - +2.1 5,435,983 - +1.4 5,435,983 - -0.5 5,435,983 - -0.2 5,435,983 - -1.3 5,435,983 - +0.7 5,435,983 - +0.7 5,435,985 + +0.4 5,435,985 + -0.5 5,435,985 + +1.0 5,435,985 + +1.2 5,435,985 + -0.7 5,435,986 - -0.2 5,435,986 - +0.4 5,435,986 - +1.6 5,435,986 - +2.7 5,435,986 - -0.0 5,435,986 - -0.8 5,435,986 - -0.1 5,436,082 - -0.1 5,436,441 + Psyr_4572 0.51 +0.7 5,436,494 + Psyr_4572 0.58 -1.6 5,436,494 + Psyr_4572 0.58 +0.2 5,436,494 + Psyr_4572 0.58 +1.2 5,436,494 + Psyr_4572 0.58 -0.8 5,436,494 + Psyr_4572 0.58 -1.1 5,436,494 + Psyr_4572 0.58 +0.8 5,436,495 - Psyr_4572 0.58 +0.2 5,436,495 - Psyr_4572 0.58 +0.1 5,436,495 - Psyr_4572 0.58 +0.4 5,436,495 - Psyr_4572 0.58 -1.3 5,436,495 - Psyr_4572 0.58 +0.9 5,436,495 - Psyr_4572 0.58 +0.6 5,436,495 - Psyr_4572 0.58 -1.1 5,436,495 - Psyr_4572 0.58 +2.0 5,436,495 - Psyr_4572 0.58 +1.5 5,436,495 - Psyr_4572 0.58 -0.8 5,436,495 - Psyr_4572 0.58 -0.5 5,436,495 - Psyr_4572 0.58 +1.5 5,436,495 - Psyr_4572 0.58 +1.1 5,436,497 + Psyr_4572 0.59 -0.6 5,436,497 + Psyr_4572 0.59 +0.7 5,436,497 + Psyr_4572 0.59 -0.2 5,436,498 - Psyr_4572 0.59 +0.4 5,436,498 - Psyr_4572 0.59 -2.1 5,436,498 - Psyr_4572 0.59 +0.2 5,436,498 - Psyr_4572 0.59 +0.9 5,436,512 + Psyr_4572 0.61 -0.8 5,436,512 + Psyr_4572 0.61 +0.0 5,436,512 + Psyr_4572 0.61 +1.6 5,436,512 + Psyr_4572 0.61 -1.0 5,436,512 + Psyr_4572 0.61 -1.6 5,436,513 - Psyr_4572 0.61 -0.6 5,436,513 - Psyr_4572 0.61 +1.0 5,436,513 - Psyr_4572 0.61 -1.3 5,436,513 - Psyr_4572 0.61 -0.0 5,436,513 - Psyr_4572 0.61 -0.1 5,436,513 - Psyr_4572 0.61 +0.2 5,436,671 + Psyr_4572 0.81 -0.8 5,436,671 + Psyr_4572 0.81 +0.2 5,436,671 + Psyr_4572 0.81 +0.0 5,436,671 + Psyr_4572 0.81 +1.9 5,436,671 + Psyr_4572 0.81 +0.7 5,436,672 - Psyr_4572 0.81 +0.4 5,436,672 - Psyr_4572 0.81 +0.2 5,436,672 - Psyr_4572 0.81 +3.0 5,436,672 - Psyr_4572 0.81 -0.7 5,436,672 - Psyr_4572 0.81 +0.7 5,436,672 - Psyr_4572 0.81 -0.4 5,436,672 - Psyr_4572 0.81 -0.8 5,436,674 - Psyr_4572 0.81 +1.0 5,436,789 - +1.0 5,436,803 + +3.0 5,436,804 - -0.1 5,436,804 - +0.9 5,436,853 + +1.7 5,436,854 - -0.4 5,436,854 - -1.1 5,436,854 - +2.2 5,436,936 - -0.3 5,436,975 + Psyr_4573 0.16 -0.8 5,436,975 + Psyr_4573 0.16 +1.8 5,436,975 + Psyr_4573 0.16 +0.2 5,436,975 + Psyr_4573 0.16 -0.8 5,436,975 + Psyr_4573 0.16 -3.1 5,436,975 + Psyr_4573 0.16 -0.3 5,436,975 + Psyr_4573 0.16 +0.2 5,436,975 + Psyr_4573 0.16 -0.6 5,436,975 + Psyr_4573 0.16 -1.8 5,436,975 + Psyr_4573 0.16 -2.3 5,436,975 + Psyr_4573 0.16 -2.1 5,436,976 - Psyr_4573 0.16 -2.3 5,436,976 - Psyr_4573 0.16 -0.7 5,436,976 - Psyr_4573 0.16 -3.3 5,436,976 - Psyr_4573 0.16 -1.3 5,436,976 - Psyr_4573 0.16 +0.2 5,436,976 - Psyr_4573 0.16 -1.0 5,436,976 - Psyr_4573 0.16 -0.8 5,436,976 - Psyr_4573 0.16 +1.2 5,436,976 - Psyr_4573 0.16 +0.8 5,436,976 - Psyr_4573 0.16 -1.1 5,437,106 + Psyr_4573 0.55 -0.8 5,437,106 + Psyr_4573 0.55 +0.9 5,437,106 + Psyr_4573 0.55 -1.0 5,437,106 + Psyr_4573 0.55 -2.2 5,437,106 + Psyr_4573 0.55 -1.7 5,437,106 + Psyr_4573 0.55 -0.6 5,437,106 + Psyr_4573 0.55 +1.5 5,437,106 + Psyr_4573 0.55 -0.9 5,437,106 + Psyr_4573 0.55 -0.8 5,437,106 + Psyr_4573 0.55 -2.1 5,437,106 + Psyr_4573 0.55 -1.2 5,437,106 + Psyr_4573 0.55 -1.3 5,437,106 + Psyr_4573 0.55 -2.3 5,437,106 + Psyr_4573 0.55 -0.8 5,437,106 + Psyr_4573 0.55 -0.8 5,437,106 + Psyr_4573 0.55 -0.7 5,437,107 - Psyr_4573 0.55 -0.1 5,437,107 - Psyr_4573 0.55 -2.2 5,437,107 - Psyr_4573 0.55 -0.2 5,437,107 - Psyr_4573 0.55 +0.2 5,437,107 - Psyr_4573 0.55 -0.0 5,437,107 - Psyr_4573 0.55 +0.5 5,437,222 + Psyr_4573 0.89 -2.3 5,437,222 + Psyr_4573 0.89 -0.4 5,437,222 + Psyr_4573 0.89 +1.8 5,437,222 + Psyr_4573 0.89 -1.3 5,437,222 + Psyr_4573 0.89 +0.2 5,437,222 + Psyr_4573 0.89 -0.6 5,437,222 + Psyr_4573 0.89 -0.9 5,437,222 + Psyr_4573 0.89 -3.1 5,437,223 - Psyr_4573 0.89 -1.6 5,437,223 - Psyr_4573 0.89 -1.3 5,437,223 - Psyr_4573 0.89 -2.5 5,437,223 - Psyr_4573 0.89 +0.0 5,437,223 - Psyr_4573 0.89 -1.8 5,437,223 - Psyr_4573 0.89 -0.8 5,437,223 - Psyr_4573 0.89 -1.3 5,437,223 - Psyr_4573 0.89 -0.1 5,438,036 + +0.9 5,438,036 + +0.8 5,438,036 + +2.2 5,438,036 + -0.0 5,438,036 + +0.9 5,438,036 + -0.8 5,438,036 + -0.7 5,438,036 + -0.4 5,438,036 + +0.9 5,438,036 + -1.3 5,438,036 + +0.2 5,438,036 + -2.3 5,438,036 + +0.2 5,438,036 + +1.2 5,438,036 + -0.6 5,438,036 + -1.3 5,438,036 + +0.4 5,438,037 - +2.0 5,438,037 - +1.0 5,438,037 - +1.1 5,438,037 - +0.8 5,438,037 - +2.2 5,438,037 - +0.6 5,438,037 - -0.8 5,438,037 - +1.5 5,438,037 - -0.1 5,438,037 - +0.6 5,438,037 - +1.0 5,438,038 + -0.8 5,438,038 + -0.7 5,438,038 + -0.3 5,438,038 + -2.3 5,438,038 + -0.0 5,438,038 + -1.3 5,438,038 + +0.0 5,438,038 + -0.5 5,438,038 + +2.2 5,438,038 + +1.0 5,438,038 + -1.0 5,438,038 + +0.4 5,438,038 + -0.1 5,438,038 + +0.6 5,438,038 + +0.2 5,438,039 - +1.2 5,438,039 - +0.5 5,438,039 - +1.1 5,438,039 - -0.5 5,438,039 - +2.2 5,438,039 - +0.7 5,438,039 - -1.3 5,438,039 - +1.6 5,438,039 - -0.4 5,438,039 - -0.8 5,438,039 - -0.1 5,438,039 - +0.2 5,438,039 - -1.0 5,438,039 - +0.7 5,438,039 - -1.2 5,438,039 - +0.2 5,438,039 - +0.7 5,438,039 - -0.3 5,438,049 + -2.1 5,438,079 + -0.9 5,438,102 - +0.7 5,438,210 + Psyr_4575 0.14 -1.6 5,438,210 + Psyr_4575 0.14 -0.7 5,438,210 + Psyr_4575 0.14 -3.7 5,438,210 + Psyr_4575 0.14 +0.2 5,438,210 + Psyr_4575 0.14 -0.1 5,438,210 + Psyr_4575 0.14 -1.3 5,438,210 + Psyr_4575 0.14 +0.4 5,438,211 - Psyr_4575 0.14 +1.7 5,438,211 - Psyr_4575 0.14 +0.6 5,438,211 - Psyr_4575 0.14 -0.3 5,438,211 - Psyr_4575 0.14 +1.7 5,438,211 - Psyr_4575 0.14 +0.2 5,438,211 - Psyr_4575 0.14 +0.1 5,438,211 - Psyr_4575 0.14 +0.2 5,438,211 - Psyr_4575 0.14 +0.7 5,438,211 - Psyr_4575 0.14 +0.7
Or see this region's nucleotide sequence