Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4477

Experiment: 4-hydroxybutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-hydroxybutyric (C)
5,336,681	-		Psyr_4476	0.29	-2.1
5,336,681	-		Psyr_4476	0.29	-0.8
5,336,681	-		Psyr_4476	0.29	-0.9
5,336,878	-		Psyr_4476	0.51	+0.2
5,336,878	-		Psyr_4476	0.51	-0.8
5,337,128	-		Psyr_4476	0.79	-1.0
5,337,128	-		Psyr_4476	0.79	-3.0
5,337,128	-		Psyr_4476	0.79	-1.6
5,337,131	-		Psyr_4476	0.80	-0.8
5,337,131	-		Psyr_4476	0.80	-2.2
5,337,131	-		Psyr_4476	0.80	+0.2
5,337,131	-		Psyr_4476	0.80	-0.4
5,337,131	-		Psyr_4476	0.80	-0.6
5,337,131	-		Psyr_4476	0.80	-0.2
5,337,131	-		Psyr_4476	0.80	+0.3
5,337,131	-		Psyr_4476	0.80	+0.2
5,337,466	+				-0.5
5,337,467	-				+1.6
5,337,522	+				+0.0
5,337,522	+				-2.1
5,337,523	-				+0.5
5,337,523	-				-0.0
5,337,632	-				+1.0
5,337,632	-				-0.2
5,337,709	+		Psyr_4477	0.11	-0.4
5,337,710	-		Psyr_4477	0.11	+0.3
5,337,728	+		Psyr_4477	0.11	+0.7
5,337,729	-		Psyr_4477	0.11	-0.5
5,337,729	-		Psyr_4477	0.11	-1.1
5,337,886	+		Psyr_4477	0.18	+0.5
5,337,886	+		Psyr_4477	0.18	+1.7
5,337,886	+		Psyr_4477	0.18	+0.9
5,337,887	-		Psyr_4477	0.18	+0.2
5,337,887	-		Psyr_4477	0.18	-0.2
5,337,887	-		Psyr_4477	0.18	+0.4
5,338,351	-		Psyr_4477	0.38	+1.2
5,338,351	-		Psyr_4477	0.38	+0.8
5,338,477	-		Psyr_4477	0.44	+0.3
5,338,477	-		Psyr_4477	0.44	-0.5
5,338,519	+		Psyr_4477	0.45	+1.1
5,338,519	+		Psyr_4477	0.45	+0.5
5,338,520	-		Psyr_4477	0.45	+0.2
5,338,520	-		Psyr_4477	0.45	+0.9
5,338,544	+		Psyr_4477	0.47	+1.2
5,338,544	+		Psyr_4477	0.47	+1.0
5,338,545	-		Psyr_4477	0.47	+3.2
5,338,546	+		Psyr_4477	0.47	+0.5
5,338,546	+		Psyr_4477	0.47	+1.1
5,338,546	+		Psyr_4477	0.47	+1.4
5,338,546	+		Psyr_4477	0.47	-0.0
5,338,546	+		Psyr_4477	0.47	+1.3
5,338,546	+		Psyr_4477	0.47	-1.6
5,338,546	+		Psyr_4477	0.47	-0.8
5,338,546	+		Psyr_4477	0.47	-2.1
5,338,547	-		Psyr_4477	0.47	+0.4
5,338,547	-		Psyr_4477	0.47	+0.5
5,338,547	-		Psyr_4477	0.47	-0.0
5,338,547	-		Psyr_4477	0.47	+1.2
5,338,547	-		Psyr_4477	0.47	+1.9
5,338,547	-		Psyr_4477	0.47	-0.0
5,338,547	-		Psyr_4477	0.47	-1.2
5,338,547	-		Psyr_4477	0.47	-1.3
5,338,635	-		Psyr_4477	0.50	-1.2
5,338,635	-		Psyr_4477	0.50	+0.6
5,338,749	+		Psyr_4477	0.55	+1.6
5,338,749	+		Psyr_4477	0.55	-1.4
5,338,749	+		Psyr_4477	0.55	+1.6
5,339,098	+		Psyr_4477	0.70	-0.2
5,339,155	+		Psyr_4477	0.73	+1.4
5,339,155	+		Psyr_4477	0.73	+2.0
5,339,155	+		Psyr_4477	0.73	-0.3
5,339,156	-		Psyr_4477	0.73	-0.4
5,339,156	-		Psyr_4477	0.73	-0.8
5,339,156	-		Psyr_4477	0.73	+1.0
5,339,156	-		Psyr_4477	0.73	+0.7
5,339,206	+		Psyr_4477	0.75	-0.0
5,339,206	+		Psyr_4477	0.75	-1.3
5,339,206	+		Psyr_4477	0.75	+0.0
5,339,206	+		Psyr_4477	0.75	+0.1
5,339,207	-		Psyr_4477	0.75	+0.4
5,339,207	-		Psyr_4477	0.75	+0.2
5,339,207	-		Psyr_4477	0.75	+0.2
5,339,207	-		Psyr_4477	0.75	+0.0
5,339,207	-		Psyr_4477	0.75	-2.0
5,339,207	-		Psyr_4477	0.75	+0.9
5,339,207	-		Psyr_4477	0.75	-3.4
5,339,207	-		Psyr_4477	0.75	-0.0
5,339,253	-		Psyr_4477	0.77	+0.3
5,339,253	-		Psyr_4477	0.77	-1.2
5,339,265	+		Psyr_4477	0.78	+0.9
5,339,265	+		Psyr_4477	0.78	-1.0
5,339,265	+		Psyr_4477	0.78	-1.8
5,339,266	-		Psyr_4477	0.78	+1.4
5,339,266	-		Psyr_4477	0.78	+1.4
5,339,266	-		Psyr_4477	0.78	-0.9
5,339,266	-		Psyr_4477	0.78	-1.0
5,339,316	+		Psyr_4477	0.80	+2.4
5,339,317	-		Psyr_4477	0.80	+2.0
5,339,317	-		Psyr_4477	0.80	-1.7
5,339,317	-		Psyr_4477	0.80	+0.6
5,339,317	-		Psyr_4477	0.80	-0.3
5,339,317	-		Psyr_4477	0.80	+2.1
5,339,366	+		Psyr_4477	0.82	-1.0
5,339,367	-		Psyr_4477	0.82	-1.0
5,339,367	-		Psyr_4477	0.82	+1.2
5,339,484	-		Psyr_4477	0.87	+0.3
5,339,703	+				+0.7
5,339,703	+				+0.4
5,339,703	+				-1.7
5,339,703	+				+0.2
5,339,703	+				-1.7
5,339,704	-				+0.4
5,339,704	-				-1.0
5,339,704	-				-0.8
5,339,704	-				+1.4
5,339,704	-				+1.0
5,339,704	-				-1.6
5,339,704	-				+0.3
5,339,704	-				-0.0
5,339,704	-				+0.4
5,339,704	-				+0.1
5,339,704	-				+0.2
5,339,892	+				+0.2
5,339,893	-				+0.3
5,339,893	-				+0.7
5,339,893	-				+3.0
5,339,933	-				-0.2
5,339,956	+				-1.4
5,339,957	-				-0.1
5,339,957	-				-0.2
5,339,957	-				+0.1
5,339,957	-				-1.0
5,339,957	-				+1.9
5,339,981	+				-0.4
5,339,982	-				-0.8
5,340,002	+				-1.1
5,340,002	+				-0.7
5,340,002	+				-0.3
5,340,002	+				-0.2
5,340,002	+				+0.5
5,340,002	+				+0.0
5,340,003	-				-0.7
5,340,003	-				+1.2
5,340,003	-				-2.6
5,340,003	-				+0.7
5,340,003	-				+2.1
5,340,036	-				+0.1
5,340,036	-				+1.5
5,340,111	+				+0.7
5,340,111	+				-0.5
5,340,111	+				-0.4
5,340,112	-				+2.7
5,340,112	-				-0.5
5,340,112	-				+0.2
5,340,112	-				+1.2
5,340,112	-				+0.8
5,340,112	-				-0.8
5,340,112	-				+0.2
5,340,112	-				+0.0
5,340,114	+				+1.4
5,340,114	+				+1.2
5,340,114	+				-1.7
5,340,114	+				-1.4
5,340,114	+				-0.4
5,340,114	+				-0.4
5,340,115	-				+1.0
5,340,115	-				-1.0
5,340,115	-				-1.0
5,340,115	-				+1.2
5,340,115	-				-2.1
5,340,115	-				+0.6
5,340,115	-				-0.2
5,340,115	-				+1.1
5,340,198	+		Psyr_4478	0.15	-1.4
5,340,198	+		Psyr_4478	0.15	+0.8
5,340,198	+		Psyr_4478	0.15	-2.8
5,340,282	+		Psyr_4478	0.25	-0.6
5,340,282	+		Psyr_4478	0.25	-0.8
5,340,283	-		Psyr_4478	0.25	-0.7
5,340,283	-		Psyr_4478	0.25	+1.5
5,340,283	-		Psyr_4478	0.25	-1.3
5,340,396	+		Psyr_4478	0.39	-0.6
5,340,396	+		Psyr_4478	0.39	+0.3
5,340,396	+		Psyr_4478	0.39	+0.5
5,340,397	-		Psyr_4478	0.39	-1.4
5,340,397	-		Psyr_4478	0.39	+0.4
5,340,397	-		Psyr_4478	0.39	+0.7
5,340,564	+		Psyr_4478	0.60	-0.2
5,340,565	-		Psyr_4478	0.60	-0.1
5,340,565	-		Psyr_4478	0.60	-0.8