Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4453

Experiment: 4-hydroxybutyric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4451 and Psyr_4452 overlap by 4 nucleotidesPsyr_4452 and Psyr_4453 are separated by 21 nucleotidesPsyr_4453 and Psyr_4454 are separated by 25 nucleotidesPsyr_4454 and Psyr_4455 are separated by 41 nucleotides Psyr_4451: Psyr_4451 - UreE urease accessory, N-terminal:UreE urease accessory, C-terminal, at 5,317,246 to 5,317,746 _4451 Psyr_4452: Psyr_4452 - Urease accessory protein UreF, at 5,317,743 to 5,318,417 _4452 Psyr_4453: Psyr_4453 - Urease accessory protein UreG, at 5,318,439 to 5,319,056 _4453 Psyr_4454: Psyr_4454 - HupE/UreJ protein, at 5,319,082 to 5,319,654 _4454 Psyr_4455: Psyr_4455 - conserved hypothetical protein, at 5,319,696 to 5,320,115 _4455 Position (kb) 5318 5319 5320Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5317.514 kb on - strand, within Psyr_4451at 5317.579 kb on + strand, within Psyr_4451at 5317.579 kb on + strand, within Psyr_4451at 5317.579 kb on + strand, within Psyr_4451at 5317.579 kb on + strand, within Psyr_4451at 5317.580 kb on - strand, within Psyr_4451at 5317.580 kb on - strand, within Psyr_4451at 5317.709 kb on - strandat 5317.800 kb on + strandat 5317.807 kb on - strandat 5317.807 kb on - strandat 5317.807 kb on - strandat 5318.394 kb on + strandat 5318.395 kb on - strandat 5318.395 kb on - strandat 5318.395 kb on - strandat 5318.395 kb on - strandat 5318.536 kb on - strand, within Psyr_4453at 5318.536 kb on - strand, within Psyr_4453at 5318.561 kb on + strand, within Psyr_4453at 5318.561 kb on + strand, within Psyr_4453at 5318.562 kb on - strand, within Psyr_4453at 5318.562 kb on - strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.802 kb on + strand, within Psyr_4453at 5318.802 kb on + strand, within Psyr_4453at 5318.802 kb on + strand, within Psyr_4453at 5318.802 kb on + strand, within Psyr_4453at 5318.802 kb on + strand, within Psyr_4453at 5318.802 kb on + strand, within Psyr_4453at 5318.802 kb on + strand, within Psyr_4453at 5318.802 kb on + strand, within Psyr_4453at 5318.802 kb on + strand, within Psyr_4453at 5318.802 kb on + strand, within Psyr_4453at 5318.802 kb on + strand, within Psyr_4453at 5318.802 kb on + strand, within Psyr_4453at 5318.803 kb on - strand, within Psyr_4453at 5318.803 kb on - strand, within Psyr_4453at 5318.803 kb on - strand, within Psyr_4453at 5318.803 kb on - strand, within Psyr_4453at 5318.803 kb on - strand, within Psyr_4453at 5318.803 kb on - strand, within Psyr_4453at 5318.803 kb on - strand, within Psyr_4453at 5318.807 kb on - strand, within Psyr_4453at 5318.807 kb on - strand, within Psyr_4453at 5318.807 kb on - strand, within Psyr_4453at 5319.088 kb on + strandat 5319.404 kb on + strand, within Psyr_4454at 5319.404 kb on + strand, within Psyr_4454at 5319.405 kb on - strand, within Psyr_4454at 5319.405 kb on - strand, within Psyr_4454at 5319.722 kb on - strandat 5319.727 kb on + strandat 5319.727 kb on + strandat 5319.728 kb on - strandat 5319.728 kb on - strandat 5319.926 kb on - strand, within Psyr_4455at 5319.963 kb on + strand, within Psyr_4455at 5319.963 kb on + strand, within Psyr_4455at 5319.963 kb on + strand, within Psyr_4455at 5320.026 kb on + strand, within Psyr_4455

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C)
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5,317,514 - Psyr_4451 0.53 +0.6
5,317,579 + Psyr_4451 0.66 -1.0
5,317,579 + Psyr_4451 0.66 +0.2
5,317,579 + Psyr_4451 0.66 +0.2
5,317,579 + Psyr_4451 0.66 +1.7
5,317,580 - Psyr_4451 0.67 -0.2
5,317,580 - Psyr_4451 0.67 -1.4
5,317,709 - -0.6
5,317,800 + -0.6
5,317,807 - +0.5
5,317,807 - -0.8
5,317,807 - +1.2
5,318,394 + +0.2
5,318,395 - -2.1
5,318,395 - +0.4
5,318,395 - +1.5
5,318,395 - -2.4
5,318,536 - Psyr_4453 0.16 +0.5
5,318,536 - Psyr_4453 0.16 -0.8
5,318,561 + Psyr_4453 0.20 -0.9
5,318,561 + Psyr_4453 0.20 -0.2
5,318,562 - Psyr_4453 0.20 +0.5
5,318,562 - Psyr_4453 0.20 +0.4
5,318,565 + Psyr_4453 0.20 -1.2
5,318,565 + Psyr_4453 0.20 +1.2
5,318,565 + Psyr_4453 0.20 -0.3
5,318,565 + Psyr_4453 0.20 -0.4
5,318,565 + Psyr_4453 0.20 +0.2
5,318,565 + Psyr_4453 0.20 +0.3
5,318,565 + Psyr_4453 0.20 -0.2
5,318,565 + Psyr_4453 0.20 -0.2
5,318,565 + Psyr_4453 0.20 +0.9
5,318,565 + Psyr_4453 0.20 +0.8
5,318,565 + Psyr_4453 0.20 -1.6
5,318,565 + Psyr_4453 0.20 +2.5
5,318,565 + Psyr_4453 0.20 -0.3
5,318,565 + Psyr_4453 0.20 -1.4
5,318,565 + Psyr_4453 0.20 +0.2
5,318,565 + Psyr_4453 0.20 +0.4
5,318,565 + Psyr_4453 0.20 +0.6
5,318,565 + Psyr_4453 0.20 -0.9
5,318,565 + Psyr_4453 0.20 -0.5
5,318,566 - Psyr_4453 0.21 -3.0
5,318,566 - Psyr_4453 0.21 -0.5
5,318,566 - Psyr_4453 0.21 -0.7
5,318,566 - Psyr_4453 0.21 +1.2
5,318,566 - Psyr_4453 0.21 -0.6
5,318,566 - Psyr_4453 0.21 -0.4
5,318,566 - Psyr_4453 0.21 +0.4
5,318,566 - Psyr_4453 0.21 -0.5
5,318,566 - Psyr_4453 0.21 -1.1
5,318,566 - Psyr_4453 0.21 -0.6
5,318,566 - Psyr_4453 0.21 -0.5
5,318,566 - Psyr_4453 0.21 -1.1
5,318,566 - Psyr_4453 0.21 +1.5
5,318,566 - Psyr_4453 0.21 -1.1
5,318,566 - Psyr_4453 0.21 -0.6
5,318,566 - Psyr_4453 0.21 -0.4
5,318,566 - Psyr_4453 0.21 +1.5
5,318,566 - Psyr_4453 0.21 -1.8
5,318,566 - Psyr_4453 0.21 +0.2
5,318,566 - Psyr_4453 0.21 -1.0
5,318,802 + Psyr_4453 0.59 +2.0
5,318,802 + Psyr_4453 0.59 +0.8
5,318,802 + Psyr_4453 0.59 -0.4
5,318,802 + Psyr_4453 0.59 +0.4
5,318,802 + Psyr_4453 0.59 -0.5
5,318,802 + Psyr_4453 0.59 +0.4
5,318,802 + Psyr_4453 0.59 +0.2
5,318,802 + Psyr_4453 0.59 +0.1
5,318,802 + Psyr_4453 0.59 +1.8
5,318,802 + Psyr_4453 0.59 +0.4
5,318,802 + Psyr_4453 0.59 -0.9
5,318,802 + Psyr_4453 0.59 -1.1
5,318,803 - Psyr_4453 0.59 -0.6
5,318,803 - Psyr_4453 0.59 +1.2
5,318,803 - Psyr_4453 0.59 -0.8
5,318,803 - Psyr_4453 0.59 -0.7
5,318,803 - Psyr_4453 0.59 -1.6
5,318,803 - Psyr_4453 0.59 +0.6
5,318,803 - Psyr_4453 0.59 +1.5
5,318,807 - Psyr_4453 0.60 +0.2
5,318,807 - Psyr_4453 0.60 +0.2
5,318,807 - Psyr_4453 0.60 -1.4
5,319,088 + -1.0
5,319,404 + Psyr_4454 0.56 +0.3
5,319,404 + Psyr_4454 0.56 +0.2
5,319,405 - Psyr_4454 0.56 +0.8
5,319,405 - Psyr_4454 0.56 +0.9
5,319,722 - -1.8
5,319,727 + +0.8
5,319,727 + +2.8
5,319,728 - -1.7
5,319,728 - +0.8
5,319,926 - Psyr_4455 0.55 +0.7
5,319,963 + Psyr_4455 0.64 -1.1
5,319,963 + Psyr_4455 0.64 +0.4
5,319,963 + Psyr_4455 0.64 +2.2
5,320,026 + Psyr_4455 0.79 +0.7

Or see this region's nucleotide sequence