Experiment: 4-hydroxybutyric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4418 and Psyr_4419 overlap by 1 nucleotides Psyr_4419 and Psyr_4420 overlap by 4 nucleotides
Psyr_4418: Psyr_4418 - Precorrin-6Y C5,15-methyltransferase (decarboxylating), at 5,282,096 to 5,283,298
_4418
Psyr_4419: Psyr_4419 - Cobalamin (vitamin B12) biosynthesis CbiD protein, at 5,283,298 to 5,284,410
_4419
Psyr_4420: Psyr_4420 - precorrin-6A reductase, at 5,284,407 to 5,285,147
_4420
Position (kb) 5283
5284
5285 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5282.408 kb on + strand, within Psyr_4418 at 5282.408 kb on + strand, within Psyr_4418 at 5282.409 kb on - strand, within Psyr_4418 at 5282.409 kb on - strand, within Psyr_4418 at 5282.803 kb on - strand, within Psyr_4418 at 5283.208 kb on + strand at 5283.591 kb on - strand, within Psyr_4419 at 5283.727 kb on + strand, within Psyr_4419 at 5283.728 kb on - strand, within Psyr_4419 at 5283.728 kb on - strand, within Psyr_4419 at 5283.871 kb on + strand, within Psyr_4419 at 5283.871 kb on + strand, within Psyr_4419 at 5283.871 kb on + strand, within Psyr_4419 at 5283.871 kb on + strand, within Psyr_4419 at 5283.871 kb on + strand, within Psyr_4419 at 5283.872 kb on - strand, within Psyr_4419 at 5283.872 kb on - strand, within Psyr_4419 at 5283.872 kb on - strand, within Psyr_4419 at 5283.872 kb on - strand, within Psyr_4419 at 5283.874 kb on - strand, within Psyr_4419 at 5283.977 kb on - strand, within Psyr_4419 at 5284.482 kb on + strand, within Psyr_4420 at 5284.483 kb on - strand, within Psyr_4420 at 5284.483 kb on - strand, within Psyr_4420 at 5284.483 kb on - strand, within Psyr_4420 at 5284.483 kb on - strand, within Psyr_4420 at 5284.483 kb on - strand, within Psyr_4420 at 5284.572 kb on + strand, within Psyr_4420 at 5284.572 kb on + strand, within Psyr_4420 at 5284.572 kb on + strand, within Psyr_4420 at 5284.572 kb on + strand, within Psyr_4420 at 5284.572 kb on + strand, within Psyr_4420 at 5284.572 kb on + strand, within Psyr_4420 at 5284.573 kb on - strand, within Psyr_4420 at 5284.573 kb on - strand, within Psyr_4420 at 5284.573 kb on - strand, within Psyr_4420 at 5284.573 kb on - strand, within Psyr_4420 at 5284.963 kb on + strand, within Psyr_4420 at 5285.288 kb on + strand at 5285.288 kb on + strand at 5285.288 kb on + strand at 5285.288 kb on + strand at 5285.288 kb on + strand at 5285.288 kb on + strand at 5285.288 kb on + strand at 5285.288 kb on + strand at 5285.288 kb on + strand at 5285.288 kb on + strand at 5285.288 kb on + strand at 5285.288 kb on + strand at 5285.288 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C) remove 5,282,408 + Psyr_4418 0.26 +0.2 5,282,408 + Psyr_4418 0.26 -1.4 5,282,409 - Psyr_4418 0.26 -2.2 5,282,409 - Psyr_4418 0.26 -0.4 5,282,803 - Psyr_4418 0.59 -3.9 5,283,208 + -2.2 5,283,591 - Psyr_4419 0.26 +2.0 5,283,727 + Psyr_4419 0.39 +0.5 5,283,728 - Psyr_4419 0.39 +0.8 5,283,728 - Psyr_4419 0.39 -2.2 5,283,871 + Psyr_4419 0.51 +0.5 5,283,871 + Psyr_4419 0.51 +0.2 5,283,871 + Psyr_4419 0.51 +0.6 5,283,871 + Psyr_4419 0.51 -1.2 5,283,871 + Psyr_4419 0.51 +2.5 5,283,872 - Psyr_4419 0.52 -0.6 5,283,872 - Psyr_4419 0.52 -2.8 5,283,872 - Psyr_4419 0.52 +1.0 5,283,872 - Psyr_4419 0.52 +0.6 5,283,874 - Psyr_4419 0.52 +1.5 5,283,977 - Psyr_4419 0.61 -1.4 5,284,482 + Psyr_4420 0.10 -2.4 5,284,483 - Psyr_4420 0.10 -2.1 5,284,483 - Psyr_4420 0.10 -1.8 5,284,483 - Psyr_4420 0.10 -2.6 5,284,483 - Psyr_4420 0.10 -1.4 5,284,483 - Psyr_4420 0.10 +0.2 5,284,572 + Psyr_4420 0.22 -2.1 5,284,572 + Psyr_4420 0.22 +0.2 5,284,572 + Psyr_4420 0.22 -1.4 5,284,572 + Psyr_4420 0.22 +0.2 5,284,572 + Psyr_4420 0.22 -1.4 5,284,572 + Psyr_4420 0.22 +0.2 5,284,573 - Psyr_4420 0.22 +0.2 5,284,573 - Psyr_4420 0.22 -0.8 5,284,573 - Psyr_4420 0.22 -2.4 5,284,573 - Psyr_4420 0.22 -0.7 5,284,963 + Psyr_4420 0.75 -0.8 5,285,288 + +2.8 5,285,288 + -0.6 5,285,288 + -1.6 5,285,288 + -0.6 5,285,288 + -0.7 5,285,288 + -0.3 5,285,288 + -0.7 5,285,288 + +0.8 5,285,288 + +3.0 5,285,288 + +0.4 5,285,288 + +2.3 5,285,288 + +0.4 5,285,288 + -1.1
Or see this region's nucleotide sequence