Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4345

Experiment: 4-hydroxybutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-hydroxybutyric (C)
5,197,326	+		Psyr_4343	0.15	-3.1
5,197,327	-		Psyr_4343	0.16	-0.1
5,197,433	+		Psyr_4343	0.35	+0.1
5,197,433	+		Psyr_4343	0.35	-1.5
5,197,434	-		Psyr_4343	0.35	-3.5
5,197,451	+		Psyr_4343	0.38	-0.3
5,197,451	+		Psyr_4343	0.38	-1.7
5,197,451	+		Psyr_4343	0.38	+0.1
5,197,451	+		Psyr_4343	0.38	+1.1
5,197,452	-		Psyr_4343	0.38	-0.6
5,197,452	-		Psyr_4343	0.38	+0.1
5,197,452	-		Psyr_4343	0.38	+0.1
5,197,452	-		Psyr_4343	0.38	-0.1
5,197,454	+		Psyr_4343	0.39	-0.2
5,197,455	-		Psyr_4343	0.39	-0.3
5,197,499	+		Psyr_4343	0.47	-0.5
5,197,500	-		Psyr_4343	0.47	+0.1
5,197,601	+		Psyr_4343	0.66	+1.1
5,197,601	+		Psyr_4343	0.66	+0.1
5,197,602	-		Psyr_4343	0.66	-3.1
5,197,602	-		Psyr_4343	0.66	+0.4
5,197,602	-		Psyr_4343	0.66	+0.1
5,197,602	-		Psyr_4343	0.66	-1.9
5,197,733	+		Psyr_4343	0.90	+0.6
5,197,733	+		Psyr_4343	0.90	+1.1
5,197,733	+		Psyr_4343	0.90	+0.8
5,197,734	-		Psyr_4343	0.90	+0.6
5,197,734	-		Psyr_4343	0.90	-2.0
5,197,734	-		Psyr_4343	0.90	-1.2
5,197,734	-		Psyr_4343	0.90	+0.7
5,197,833	+				-1.3
5,197,834	-				+0.1
5,197,834	-				-0.0
5,197,865	+		Psyr_4344	0.10	-0.9
5,197,865	+		Psyr_4344	0.10	-0.4
5,197,865	+		Psyr_4344	0.10	+0.6
5,197,865	+		Psyr_4344	0.10	-0.3
5,197,865	+		Psyr_4344	0.10	+0.1
5,197,865	+		Psyr_4344	0.10	+0.1
5,197,865	+		Psyr_4344	0.10	+0.4
5,197,865	+		Psyr_4344	0.10	+0.5
5,197,865	+		Psyr_4344	0.10	+0.6
5,197,866	-		Psyr_4344	0.10	+0.6
5,197,866	-		Psyr_4344	0.10	+2.6
5,197,866	-		Psyr_4344	0.10	+1.1
5,197,866	-		Psyr_4344	0.10	-1.9
5,197,866	-		Psyr_4344	0.10	+1.4
5,197,866	-		Psyr_4344	0.10	+3.4
5,197,866	-		Psyr_4344	0.10	-2.5
5,198,076	+		Psyr_4344	0.75	-0.5
5,198,077	-		Psyr_4344	0.75	-1.9
5,198,077	-		Psyr_4344	0.75	-1.0
5,198,091	+		Psyr_4344	0.79	-2.2
5,198,091	+		Psyr_4344	0.79	+0.8
5,198,091	+		Psyr_4344	0.79	+2.0
5,198,091	+		Psyr_4344	0.79	-1.5
5,198,091	+		Psyr_4344	0.79	-0.5
5,198,092	-		Psyr_4344	0.80	-0.2
5,198,092	-		Psyr_4344	0.80	+0.5
5,198,092	-		Psyr_4344	0.80	-1.6
5,198,092	-		Psyr_4344	0.80	+0.7
5,198,092	-		Psyr_4344	0.80	-0.0
5,198,133	+				-0.6
5,198,133	+				+0.1
5,198,133	+				-0.2
5,198,133	+				+0.8
5,198,133	+				+0.1
5,198,134	-				-0.4
5,198,134	-				-0.3
5,198,200	+				-0.3
5,198,200	+				-0.3
5,198,200	+				+1.1
5,198,201	-				+0.4
5,198,201	-				-1.5
5,198,201	-				-0.7
5,198,202	+				+0.5
5,198,202	+				+0.8
5,198,202	+				+0.9
5,198,202	+				-0.6
5,198,202	+				+0.8
5,198,202	+				+0.5
5,198,202	+				-1.0
5,198,202	+				+0.5
5,198,202	+				-0.1
5,198,202	+				+1.8
5,198,202	+				+0.7
5,198,202	+				+2.4
5,198,202	+				+0.1
5,198,202	+				+1.6
5,198,202	+				+2.1
5,198,202	+				+0.6
5,198,203	-				-1.9
5,198,203	-				+0.7
5,198,203	-				-0.5
5,198,203	-				+2.4
5,198,203	-				+1.1
5,198,203	-				+0.3
5,198,203	-				-0.3
5,198,203	-				-0.9
5,198,260	+				-0.0
5,198,260	+				+0.8
5,198,260	+				+2.0
5,198,261	-				+0.1
5,198,261	-				+0.1
5,198,261	-				+1.1
5,198,261	-				-2.2
5,198,261	-				-0.9
5,198,262	+				+0.4
5,198,262	+				+0.1
5,198,262	+				+0.4
5,198,262	+				+0.7
5,198,262	+				-1.0
5,198,262	+				-0.2
5,198,262	+				+0.3
5,198,262	+				+0.4
5,198,263	-				-2.5
5,198,263	-				+1.6
5,198,263	-				+0.1
5,198,263	-				-0.9
5,198,263	-				-1.1
5,198,263	-				-1.1
5,198,263	-				-1.0
5,198,313	+				-2.2
5,198,314	-				-1.2
5,198,314	-				-1.5
5,198,314	-				-0.9
5,198,314	-				+0.5
5,198,314	-				+0.1
5,198,346	+				-1.5
5,198,438	+		Psyr_4345	0.11	+1.1
5,198,439	-		Psyr_4345	0.11	+1.4
5,198,589	+		Psyr_4345	0.22	-2.7
5,198,589	+		Psyr_4345	0.22	-1.3
5,198,589	+		Psyr_4345	0.22	-2.7
5,198,589	+		Psyr_4345	0.22	-2.9
5,198,590	-		Psyr_4345	0.22	-0.3
5,198,590	-		Psyr_4345	0.22	+0.4
5,198,590	-		Psyr_4345	0.22	+0.5
5,198,590	-		Psyr_4345	0.22	+0.1
5,198,590	-		Psyr_4345	0.22	+1.1
5,198,745	+		Psyr_4345	0.34	+0.1
5,198,745	+		Psyr_4345	0.34	-0.6
5,198,745	+		Psyr_4345	0.34	+0.1
5,198,745	+		Psyr_4345	0.34	-1.2
5,198,745	+		Psyr_4345	0.34	-2.2
5,198,745	+		Psyr_4345	0.34	-3.1
5,198,745	+		Psyr_4345	0.34	+0.5
5,198,745	+		Psyr_4345	0.34	+0.7
5,198,745	+		Psyr_4345	0.34	+1.7
5,198,745	+		Psyr_4345	0.34	+1.6
5,198,745	+		Psyr_4345	0.34	-1.6
5,198,745	+		Psyr_4345	0.34	+0.3
5,198,745	+		Psyr_4345	0.34	-1.3
5,198,745	+		Psyr_4345	0.34	+0.1
5,198,745	+		Psyr_4345	0.34	-2.5
5,198,746	-		Psyr_4345	0.34	+0.5
5,198,746	-		Psyr_4345	0.34	-0.5
5,198,746	-		Psyr_4345	0.34	-1.5
5,198,746	-		Psyr_4345	0.34	-1.1
5,198,746	-		Psyr_4345	0.34	-0.2
5,198,746	-		Psyr_4345	0.34	-0.2
5,198,746	-		Psyr_4345	0.34	-0.4
5,198,746	-		Psyr_4345	0.34	-0.1
5,198,746	-		Psyr_4345	0.34	+0.8
5,198,746	-		Psyr_4345	0.34	-0.2
5,198,746	-		Psyr_4345	0.34	-0.8
5,198,746	-		Psyr_4345	0.34	-0.2
5,198,746	-		Psyr_4345	0.34	+0.8
5,198,746	-		Psyr_4345	0.34	-0.9
5,198,746	-		Psyr_4345	0.34	+0.5
5,198,746	-		Psyr_4345	0.34	+0.1
5,198,775	+		Psyr_4345	0.36	+0.7
5,198,776	-		Psyr_4345	0.36	-0.3
5,198,776	-		Psyr_4345	0.36	+0.1
5,198,800	-		Psyr_4345	0.38	+3.1
5,199,004	-		Psyr_4345	0.53	-0.7
5,199,153	+		Psyr_4345	0.64	-0.6
5,199,153	+		Psyr_4345	0.64	-2.7
5,199,153	+		Psyr_4345	0.64	+1.1
5,199,153	+		Psyr_4345	0.64	-1.5
5,199,153	+		Psyr_4345	0.64	-0.2
5,199,153	+		Psyr_4345	0.64	+1.7
5,199,154	-		Psyr_4345	0.64	+0.4
5,199,154	-		Psyr_4345	0.64	+0.1
5,199,154	-		Psyr_4345	0.64	-1.2
5,199,154	-		Psyr_4345	0.64	-1.3
5,199,154	-		Psyr_4345	0.64	-2.3
5,199,154	-		Psyr_4345	0.64	-0.9
5,199,154	-		Psyr_4345	0.64	-0.9
5,199,471	+		Psyr_4345	0.88	-0.3
5,199,574	+				+0.5
5,199,574	+				-0.5
5,199,574	+				+1.9
5,199,574	+				-0.5
5,199,574	+				+1.5
5,199,574	+				-0.5
5,199,574	+				-2.3
5,199,574	+				+1.1
5,199,574	+				+0.1
5,199,575	-				-0.1
5,199,575	-				-1.9
5,199,575	-				+0.1
5,199,575	-				-1.5
5,199,575	-				-1.9
5,199,575	-				-2.9
5,199,575	-				-0.3
5,199,575	-				-2.2
5,199,575	-				+0.1
5,199,575	-				+0.1
5,199,575	-				-0.9
5,199,619	+				-1.1
5,199,619	+				+1.7
5,199,624	+				-0.5
5,199,624	+				+0.7
5,199,624	+				-1.7
5,199,625	-				-0.4
5,199,766	+				+2.5
5,199,766	+				-0.5
5,199,766	+				+2.1
5,199,766	+				-2.1
5,199,766	+				-0.0
5,199,766	+				-0.9
5,199,766	+				-0.9
5,199,766	+				+0.3
5,200,024	+		Psyr_4346	0.22	-1.5
5,200,169	+		Psyr_4346	0.36	+0.8
5,200,235	+		Psyr_4346	0.42	-1.5
5,200,235	+		Psyr_4346	0.42	-0.7
5,200,385	+		Psyr_4346	0.57	-0.9
5,200,385	+		Psyr_4346	0.57	+1.7
5,200,397	+		Psyr_4346	0.58	+1.4
5,200,418	+		Psyr_4346	0.60	-1.3
5,200,469	+		Psyr_4346	0.65	-0.9
5,200,469	+		Psyr_4346	0.65	+0.1
5,200,469	+		Psyr_4346	0.65	-0.4
5,200,469	+		Psyr_4346	0.65	-2.6
5,200,469	+		Psyr_4346	0.65	-0.2
5,200,469	+		Psyr_4346	0.65	+0.1
5,200,469	+		Psyr_4346	0.65	-2.2
5,200,489	+		Psyr_4346	0.67	-0.9
5,200,489	+		Psyr_4346	0.67	-1.1