Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4014

Experiment: 4-hydroxybutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-hydroxybutyric (C)
4,780,460	+				-1.4
4,780,460	+				+0.0
4,780,460	+				-0.2
4,780,460	+				-0.8
4,780,460	+				+0.1
4,780,460	+				+0.0
4,780,460	+				+0.0
4,780,460	+				+3.5
4,780,460	+				-1.2
4,780,460	+				-0.4
4,780,460	+				+1.0
4,780,460	+				+1.8
4,780,461	-				+0.8
4,780,461	-				+1.7
4,780,461	-				-0.7
4,780,461	-				+0.0
4,780,461	-				+1.4
4,780,461	-				+1.4
4,780,461	-				+0.1
4,780,461	-				+0.8
4,780,461	-				+0.9
4,780,461	-				+0.4
4,780,461	-				+1.0
4,780,520	+		Psyr_4013	0.15	+0.7
4,780,520	+		Psyr_4013	0.15	+0.0
4,780,520	+		Psyr_4013	0.15	-1.5
4,780,521	-		Psyr_4013	0.15	-0.1
4,780,541	+		Psyr_4013	0.17	+0.5
4,780,542	-		Psyr_4013	0.17	+1.8
4,780,542	-		Psyr_4013	0.17	+0.4
4,780,875	-		Psyr_4013	0.56	-0.0
4,780,915	+		Psyr_4013	0.61	+0.5
4,780,915	+		Psyr_4013	0.61	-0.0
4,780,915	+		Psyr_4013	0.61	-1.0
4,780,919	+		Psyr_4013	0.61	+0.3
4,780,919	+		Psyr_4013	0.61	+0.3
4,780,919	+		Psyr_4013	0.61	+2.2
4,780,919	+		Psyr_4013	0.61	-0.2
4,780,920	-		Psyr_4013	0.61	-0.7
4,780,920	-		Psyr_4013	0.61	+0.0
4,780,920	-		Psyr_4013	0.61	-0.7
4,780,920	-		Psyr_4013	0.61	-1.5
4,781,081	+		Psyr_4013	0.80	+0.5
4,781,081	+		Psyr_4013	0.80	+0.8
4,781,081	+		Psyr_4013	0.80	-1.0
4,781,082	-		Psyr_4013	0.80	+1.9
4,781,082	-		Psyr_4013	0.80	+0.5
4,781,412	+				+1.0
4,781,413	-				+1.8
4,781,424	+				+0.0
4,781,425	-				+0.0
4,781,546	+		Psyr_4014	0.16	-2.3
4,781,546	+		Psyr_4014	0.16	-0.2
4,781,546	+		Psyr_4014	0.16	-0.8
4,781,547	-		Psyr_4014	0.17	+0.6
4,781,547	-		Psyr_4014	0.17	+0.0
4,781,547	-		Psyr_4014	0.17	+0.7
4,781,547	-		Psyr_4014	0.17	+0.5
4,781,699	+		Psyr_4014	0.35	-0.7
4,781,699	+		Psyr_4014	0.35	-0.5
4,781,699	+		Psyr_4014	0.35	-0.5
4,781,699	+		Psyr_4014	0.35	-2.0
4,781,699	+		Psyr_4014	0.35	-0.2
4,781,700	-		Psyr_4014	0.35	-2.0
4,781,700	-		Psyr_4014	0.35	+0.5
4,781,831	+		Psyr_4014	0.50	-1.8
4,781,831	+		Psyr_4014	0.50	-1.0
4,781,831	+		Psyr_4014	0.50	+0.3
4,781,831	+		Psyr_4014	0.50	+1.4
4,781,831	+		Psyr_4014	0.50	+0.5
4,781,831	+		Psyr_4014	0.50	+0.7
4,781,831	+		Psyr_4014	0.50	+0.4
4,781,831	+		Psyr_4014	0.50	+1.0
4,781,832	-		Psyr_4014	0.50	+1.0
4,781,832	-		Psyr_4014	0.50	+1.0
4,781,832	-		Psyr_4014	0.50	+1.0
4,781,832	-		Psyr_4014	0.50	-1.8
4,781,832	-		Psyr_4014	0.50	-1.5
4,781,832	-		Psyr_4014	0.50	+0.0
4,781,832	-		Psyr_4014	0.50	+0.9
4,781,892	+		Psyr_4014	0.58	-0.2
4,781,892	+		Psyr_4014	0.58	+0.3
4,781,903	+		Psyr_4014	0.59	-0.3
4,781,903	+		Psyr_4014	0.59	-1.0
4,781,904	-		Psyr_4014	0.59	-2.0
4,781,942	+		Psyr_4014	0.63	+0.0
4,781,943	-		Psyr_4014	0.64	-1.1
4,781,943	-		Psyr_4014	0.64	+3.0
4,781,981	+		Psyr_4014	0.68	-1.5
4,781,981	+		Psyr_4014	0.68	+1.6
4,781,982	-		Psyr_4014	0.68	-1.5
4,781,982	-		Psyr_4014	0.68	+1.6
4,781,982	-		Psyr_4014	0.68	-2.3
4,781,985	+		Psyr_4014	0.69	+0.0
4,781,985	+		Psyr_4014	0.69	-0.5
4,781,985	+		Psyr_4014	0.69	+0.6
4,782,005	+		Psyr_4014	0.71	+0.5
4,782,006	-		Psyr_4014	0.71	-1.0
4,782,231	+				+1.4
4,782,260	+				+0.6
4,782,260	+				+1.0
4,782,260	+				+1.6
4,782,260	+				-0.3
4,782,260	+				+0.6
4,782,260	+				-1.1
4,782,260	-				-0.3
4,782,261	-				-0.5
4,782,261	-				-0.4
4,782,261	-				-0.6
4,782,261	-				-0.2
4,782,264	+				+2.8
4,782,264	+				+0.2
4,782,264	+				+0.1
4,782,264	+				+0.0
4,782,264	+				+1.0
4,782,264	+				-0.8
4,782,264	+				-0.4
4,782,264	+				+0.6
4,782,264	+				+0.0
4,782,265	-				-1.0
4,782,265	-				+0.0
4,782,265	-				+1.0
4,782,265	-				+1.0
4,782,265	-				+0.2
4,782,265	-				+1.9
4,782,379	+				+0.9
4,782,379	+				+1.5
4,782,379	+				+1.0
4,782,379	+				+0.6
4,782,379	+				-0.2
4,782,379	+				-0.4
4,782,379	+				-0.5
4,782,380	-				+0.4
4,782,380	-				-0.5
4,782,380	-				+0.0
4,782,380	-				+1.0
4,782,380	-				-2.0
4,782,380	-				+0.9
4,782,383	+				-0.2
4,782,383	+				+1.0
4,782,383	+				+0.5
4,782,384	-				-1.0
4,782,384	-				+0.7
4,782,384	-				+1.0
4,782,384	-				+0.5
4,782,384	-				-1.1
4,782,385	+				+0.4
4,782,385	+				+0.8
4,782,385	+				-0.8
4,782,385	+				+0.3
4,782,385	+				-2.2
4,782,385	+				-0.3
4,782,385	+				+0.0
4,782,385	+				+1.8
4,782,385	+				-0.6
4,782,385	+				+0.2
4,782,386	-				-1.3
4,782,386	-				-0.2
4,782,386	-				-1.2
4,782,386	-				-1.4
4,782,386	-				+0.6
4,782,386	-				+1.4
4,782,386	-				-1.3
4,782,386	-				-1.2
4,782,386	-				+1.0
4,782,389	+				+0.0
4,782,389	+				+0.2
4,782,389	+				-0.7
4,782,389	+				+0.4
4,782,389	+				+2.0
4,782,389	+				+0.8
4,782,389	+				+0.0
4,782,389	+				-0.7
4,782,389	+				-0.4
4,782,389	+				+1.1
4,782,389	+				+0.2
4,782,390	-				+0.3
4,782,390	-				-1.8
4,782,390	-				-3.0
4,782,390	-				+0.0
4,782,390	-				+0.5
4,782,390	-				-0.2
4,782,390	-				+0.0
4,782,390	-				-1.1
4,782,390	-				+0.4
4,782,390	-				+2.4
4,782,390	-				+1.0
4,782,390	-				+0.0
4,782,391	+				-1.1
4,782,391	+				-0.6
4,782,391	+				-0.5
4,782,391	+				+0.0
4,782,391	+				+1.0
4,782,391	+				-0.9
4,782,391	+				+1.0
4,782,391	+				+0.0
4,782,391	+				+0.7
4,782,392	-				-1.4
4,782,392	-				+1.8
4,782,392	-				+0.6
4,782,392	-				+0.5
4,782,392	-				+1.0
4,782,392	-				+0.3
4,782,392	-				+0.6
4,782,398	-				+1.2
4,782,494	+				+1.6
4,782,494	+				+1.6
4,782,586	+				-0.5
4,782,588	+				+1.0
4,782,652	+				+1.4
4,782,653	-				+0.5
4,782,653	-				+0.2
4,782,659	+				+0.8
4,782,660	-				+0.0
4,782,660	-				-0.1
4,782,660	-				-0.7
4,782,661	+				+1.0
4,782,693	-				+0.9
4,782,693	-				+0.8
4,782,739	+				+0.0
4,782,740	-				-2.1
4,782,758	+				-1.5
4,782,759	-				-1.0
4,782,759	-				-1.2
4,782,762	-				+1.0
4,782,931	+				-0.2
4,782,931	+				+0.8
4,782,931	+				+0.0
4,782,932	-				+0.6
4,782,932	-				+0.0
4,782,932	-				-1.4
4,782,932	-				-0.5
4,782,932	-				+0.0
4,783,019	-				-0.7
4,783,019	-				+2.0
4,783,027	+				-0.8
4,783,027	+				-3.0
4,783,027	+				-0.3
4,783,028	-				+0.2
4,783,049	+				+0.5
4,783,049	+				-0.3
4,783,049	+				+0.2
4,783,049	+				+0.5
4,783,049	+				-1.4
4,783,050	-				+1.0
4,783,050	-				+0.0
4,783,050	-				+0.7
4,783,098	+				-1.5
4,783,098	+				-2.5
4,783,102	-				+1.8
4,783,153	+		Psyr_4015	0.24	+0.2
4,783,154	-		Psyr_4015	0.25	-1.8
4,783,166	-		Psyr_4015	0.31	-2.0
4,783,186	+		Psyr_4015	0.41	-1.1