Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4010

Experiment: 4-hydroxybutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-hydroxybutyric (C)
4,775,918	+		Psyr_4009	0.37	-0.3
4,775,918	+		Psyr_4009	0.37	+1.0
4,775,918	+		Psyr_4009	0.37	-0.7
4,775,918	+		Psyr_4009	0.37	-0.3
4,775,918	+		Psyr_4009	0.37	-0.8
4,775,918	+		Psyr_4009	0.37	-0.2
4,775,919	-		Psyr_4009	0.37	+0.5
4,775,919	-		Psyr_4009	0.37	-0.7
4,775,919	-		Psyr_4009	0.37	-0.7
4,775,919	-		Psyr_4009	0.37	-0.6
4,775,919	-		Psyr_4009	0.37	+1.0
4,775,919	-		Psyr_4009	0.37	+1.4
4,776,498	-		Psyr_4009	0.77	+0.7
4,776,560	+		Psyr_4009	0.81	+0.3
4,776,561	-		Psyr_4009	0.81	-2.6
4,776,561	-		Psyr_4009	0.81	-1.5
4,776,561	-		Psyr_4009	0.81	-1.1
4,776,561	-		Psyr_4009	0.81	-1.3
4,776,612	-		Psyr_4009	0.84	+1.6
4,776,612	-		Psyr_4009	0.84	+0.7
4,776,612	-		Psyr_4009	0.84	-2.0
4,776,612	-		Psyr_4009	0.84	+1.3
4,776,612	-		Psyr_4009	0.84	-2.6
4,776,752	+				-0.6
4,776,752	+				-1.6
4,776,752	+				-1.8
4,776,752	+				+2.0
4,776,753	-				+2.4
4,776,753	-				-0.8
4,776,753	-				+1.6
4,776,921	+				-0.7
4,776,921	+				-0.7
4,776,922	-				-0.3
4,776,922	-				-1.5
4,776,922	-				+0.8
4,776,922	-				-0.6
4,776,922	-				+0.0
4,776,984	+				+0.0
4,776,985	-				+1.8
4,776,990	+				+1.5
4,776,991	-				+0.6
4,776,991	-				-0.1
4,777,075	-		Psyr_4010	0.13	+1.3
4,777,149	+		Psyr_4010	0.19	-1.5
4,777,149	+		Psyr_4010	0.19	-1.4
4,777,150	-		Psyr_4010	0.19	+0.0
4,777,240	+		Psyr_4010	0.26	-0.8
4,777,240	+		Psyr_4010	0.26	+1.9
4,777,240	+		Psyr_4010	0.26	+0.6
4,777,241	-		Psyr_4010	0.26	+0.6
4,777,241	-		Psyr_4010	0.26	+1.0
4,777,241	-		Psyr_4010	0.26	+0.6
4,777,332	+		Psyr_4010	0.33	-0.4
4,777,332	+		Psyr_4010	0.33	+1.0
4,777,332	+		Psyr_4010	0.33	-1.2
4,777,332	+		Psyr_4010	0.33	+0.0
4,777,332	+		Psyr_4010	0.33	+1.8
4,777,332	+		Psyr_4010	0.33	+1.0
4,777,332	+		Psyr_4010	0.33	+1.6
4,777,332	+		Psyr_4010	0.33	-2.8
4,777,332	+		Psyr_4010	0.33	+0.6
4,777,332	+		Psyr_4010	0.33	-1.0
4,777,332	+		Psyr_4010	0.33	+0.4
4,777,332	+		Psyr_4010	0.33	-1.7
4,777,332	+		Psyr_4010	0.33	+0.5
4,777,332	+		Psyr_4010	0.33	+0.6
4,777,332	+		Psyr_4010	0.33	+1.8
4,777,332	+		Psyr_4010	0.33	-0.5
4,777,332	+		Psyr_4010	0.33	-1.0
4,777,333	-		Psyr_4010	0.33	-1.2
4,777,333	-		Psyr_4010	0.33	+0.3
4,777,333	-		Psyr_4010	0.33	-2.0
4,777,333	-		Psyr_4010	0.33	+1.6
4,777,333	-		Psyr_4010	0.33	+0.6
4,777,333	-		Psyr_4010	0.33	+0.5
4,777,333	-		Psyr_4010	0.33	-1.3
4,777,333	-		Psyr_4010	0.33	-0.1
4,777,333	-		Psyr_4010	0.33	-1.7
4,777,333	-		Psyr_4010	0.33	-3.5
4,777,333	-		Psyr_4010	0.33	+0.8
4,777,333	-		Psyr_4010	0.33	+1.0
4,777,333	-		Psyr_4010	0.33	-1.1
4,777,333	-		Psyr_4010	0.33	-0.5
4,777,333	-		Psyr_4010	0.33	-0.4
4,777,333	-		Psyr_4010	0.33	-0.1
4,777,334	+		Psyr_4010	0.33	-0.5
4,777,334	+		Psyr_4010	0.33	-0.3
4,777,334	+		Psyr_4010	0.33	+1.5
4,777,334	+		Psyr_4010	0.33	-1.2
4,777,335	-		Psyr_4010	0.33	+1.5
4,777,335	-		Psyr_4010	0.33	+1.2
4,777,335	-		Psyr_4010	0.33	+0.0
4,777,335	-		Psyr_4010	0.33	+0.4
4,777,335	-		Psyr_4010	0.33	-1.4
4,777,359	+		Psyr_4010	0.35	-0.4
4,777,359	+		Psyr_4010	0.35	+0.2
4,777,359	+		Psyr_4010	0.35	+1.8
4,777,359	+		Psyr_4010	0.35	-0.9
4,777,359	+		Psyr_4010	0.35	+0.6
4,777,359	+		Psyr_4010	0.35	+1.6
4,777,359	+		Psyr_4010	0.35	+0.4
4,777,360	-		Psyr_4010	0.35	-0.7
4,777,360	-		Psyr_4010	0.35	-0.1
4,777,360	-		Psyr_4010	0.35	-1.5
4,777,360	-		Psyr_4010	0.35	+0.0
4,777,360	-		Psyr_4010	0.35	+1.0
4,777,401	+		Psyr_4010	0.38	+1.0
4,777,401	+		Psyr_4010	0.38	+1.7
4,777,401	+		Psyr_4010	0.38	-0.8
4,777,402	-		Psyr_4010	0.38	-2.1
4,777,413	+		Psyr_4010	0.39	-2.3
4,777,413	+		Psyr_4010	0.39	-0.5
4,777,413	+		Psyr_4010	0.39	-2.5
4,777,413	+		Psyr_4010	0.39	-1.5
4,777,413	+		Psyr_4010	0.39	-0.2
4,777,413	+		Psyr_4010	0.39	+2.0
4,777,413	+		Psyr_4010	0.39	-0.8
4,777,413	+		Psyr_4010	0.39	+2.4
4,777,413	+		Psyr_4010	0.39	-0.1
4,777,414	-		Psyr_4010	0.39	+2.0
4,777,414	-		Psyr_4010	0.39	-1.3
4,777,414	-		Psyr_4010	0.39	+0.0
4,777,414	-		Psyr_4010	0.39	+0.0
4,777,414	-		Psyr_4010	0.39	+0.8
4,777,414	-		Psyr_4010	0.39	+2.6
4,777,414	-		Psyr_4010	0.39	+0.6
4,777,414	-		Psyr_4010	0.39	+0.5
4,777,428	+		Psyr_4010	0.40	-0.4
4,777,429	-		Psyr_4010	0.40	+0.0
4,777,713	+		Psyr_4010	0.62	+0.8
4,777,714	-		Psyr_4010	0.62	-1.3
4,777,728	+		Psyr_4010	0.63	-1.0
4,777,729	-		Psyr_4010	0.64	+1.0
4,777,729	-		Psyr_4010	0.64	-0.3
4,777,729	-		Psyr_4010	0.64	+1.8
4,777,729	-		Psyr_4010	0.64	-0.6
4,777,767	+		Psyr_4010	0.66	+0.8
4,777,767	+		Psyr_4010	0.66	+0.9
4,777,767	+		Psyr_4010	0.66	+1.2
4,777,767	+		Psyr_4010	0.66	+1.0
4,777,767	+		Psyr_4010	0.66	+0.7
4,777,767	+		Psyr_4010	0.66	-0.2
4,777,767	+		Psyr_4010	0.66	+0.9
4,777,767	+		Psyr_4010	0.66	-0.4
4,777,767	+		Psyr_4010	0.66	+0.0
4,777,767	+		Psyr_4010	0.66	-0.4
4,777,767	+		Psyr_4010	0.66	+0.9
4,777,767	+		Psyr_4010	0.66	+1.0
4,777,767	+		Psyr_4010	0.66	-1.8
4,777,767	+		Psyr_4010	0.66	-0.6
4,777,767	+		Psyr_4010	0.66	-2.0
4,777,768	-		Psyr_4010	0.67	-1.5
4,777,768	-		Psyr_4010	0.67	-1.0
4,777,768	-		Psyr_4010	0.67	-0.2
4,777,768	-		Psyr_4010	0.67	+1.4
4,777,768	-		Psyr_4010	0.67	-0.3
4,777,768	-		Psyr_4010	0.67	-0.3
4,777,768	-		Psyr_4010	0.67	-0.7
4,777,768	-		Psyr_4010	0.67	+1.2
4,777,768	-		Psyr_4010	0.67	-0.3
4,777,768	-		Psyr_4010	0.67	+0.0
4,777,768	-		Psyr_4010	0.67	-2.5
4,777,786	-		Psyr_4010	0.68	+0.0
4,777,863	+		Psyr_4010	0.74	-0.1
4,777,863	+		Psyr_4010	0.74	-0.1
4,777,863	+		Psyr_4010	0.74	-0.1
4,777,864	-		Psyr_4010	0.74	+0.0
4,777,864	-		Psyr_4010	0.74	+0.2
4,777,864	-		Psyr_4010	0.74	+2.0
4,778,070	+		Psyr_4010	0.90	+0.3
4,778,071	-		Psyr_4010	0.90	-0.4
4,778,088	+				+0.8
4,778,088	+				+1.2
4,778,088	+				-2.5
4,778,088	+				-0.2
4,778,088	+				+0.9
4,778,089	-				-2.8
4,778,089	-				+0.6
4,778,089	-				+0.0
4,778,092	+				-1.5
4,778,092	+				+0.0
4,778,092	+				+0.0
4,778,092	+				-0.3
4,778,092	+				-3.7
4,778,092	+				+0.9
4,778,093	-				+3.4
4,778,093	-				+2.7
4,778,094	+				-1.1
4,778,094	+				-2.0
4,778,094	+				-0.1
4,778,094	+				+0.0
4,778,094	+				-0.1
4,778,094	+				+1.4
4,778,094	+				-2.0
4,778,094	+				+1.4
4,778,094	+				+0.4
4,778,094	+				-2.3
4,778,094	+				+1.2
4,778,094	+				+0.2
4,778,094	+				+0.0
4,778,094	+				-1.0
4,778,094	+				+0.6
4,778,094	+				+0.5
4,778,095	-				-0.4
4,778,095	-				-0.8
4,778,095	-				-1.0
4,778,095	-				+0.0
4,778,095	-				-0.5
4,778,095	-				+0.6
4,778,095	-				+1.6
4,778,095	-				+0.6
4,778,095	-				-0.2
4,778,095	-				-0.5
4,778,095	-				+0.3
4,778,095	-				-1.3
4,778,095	-				-0.7
4,778,095	-				-0.4
4,778,095	-				+1.4
4,778,095	-				-1.0
4,778,095	-				+0.2
4,778,095	-				+0.5
4,778,095	-				+0.4
4,778,095	-				+0.6
4,778,175	+				-0.4
4,778,175	+				-2.0
4,778,175	+				+0.7
4,778,176	-				+1.8
4,778,176	-				-0.5
4,778,176	-				+0.0
4,778,176	-				+0.4
4,778,197	+				+1.6
4,778,197	+				+0.6
4,778,198	-				+1.0
4,778,198	-				-1.3
4,778,198	-				-1.0
4,778,204	+				-1.0
4,778,205	-				-0.3
4,778,230	-				+2.4
4,778,416	+				+0.2
4,778,706	-		Psyr_4011	0.24	-0.8