Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3725

Experiment: 4-hydroxybutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-hydroxybutyric (C)
4,432,802	+		Psyr_3724	0.22	+1.1
4,432,802	+		Psyr_3724	0.22	+1.0
4,432,821	+		Psyr_3724	0.24	+1.0
4,432,858	+		Psyr_3724	0.27	-0.4
4,432,859	-		Psyr_3724	0.27	+0.3
4,432,859	-		Psyr_3724	0.27	-0.1
4,432,881	+		Psyr_3724	0.28	+1.3
4,432,887	-		Psyr_3724	0.29	-1.7
4,432,927	+		Psyr_3724	0.32	-0.1
4,432,928	-		Psyr_3724	0.32	-0.8
4,432,959	+		Psyr_3724	0.35	+1.5
4,432,959	+		Psyr_3724	0.35	-0.1
4,432,959	+		Psyr_3724	0.35	+1.9
4,432,960	-		Psyr_3724	0.35	+1.0
4,432,960	-		Psyr_3724	0.35	+1.4
4,432,960	-		Psyr_3724	0.35	-0.4
4,433,153	+		Psyr_3724	0.50	-0.1
4,433,154	-		Psyr_3724	0.50	-0.1
4,433,154	-		Psyr_3724	0.50	+0.1
4,433,175	-		Psyr_3724	0.52	-1.1
4,433,187	+		Psyr_3724	0.53	+0.3
4,433,188	-		Psyr_3724	0.53	-0.5
4,433,232	+		Psyr_3724	0.56	-0.3
4,433,233	-		Psyr_3724	0.56	+1.6
4,433,233	-		Psyr_3724	0.56	+1.0
4,433,314	+		Psyr_3724	0.63	-0.9
4,433,314	+		Psyr_3724	0.63	+0.4
4,433,315	-		Psyr_3724	0.63	-1.0
4,433,315	-		Psyr_3724	0.63	+1.3
4,433,337	+		Psyr_3724	0.65	+0.9
4,433,337	+		Psyr_3724	0.65	-0.6
4,433,337	+		Psyr_3724	0.65	+1.0
4,433,338	-		Psyr_3724	0.65	-0.0
4,433,338	-		Psyr_3724	0.65	-2.1
4,433,338	-		Psyr_3724	0.65	-0.7
4,433,338	-		Psyr_3724	0.65	-1.3
4,433,341	+		Psyr_3724	0.65	+0.9
4,433,433	+		Psyr_3724	0.72	+0.8
4,433,463	+		Psyr_3724	0.75	-0.1
4,433,463	+		Psyr_3724	0.75	-0.1
4,433,464	-		Psyr_3724	0.75	-0.1
4,433,464	-		Psyr_3724	0.75	+0.7
4,433,464	-		Psyr_3724	0.75	+1.9
4,433,464	-		Psyr_3724	0.75	-0.0
4,433,470	-		Psyr_3724	0.75	+1.4
4,433,590	+		Psyr_3724	0.85	+1.9
4,433,590	+		Psyr_3724	0.85	-3.3
4,433,590	+		Psyr_3724	0.85	-0.1
4,433,590	+		Psyr_3724	0.85	-0.1
4,433,590	+		Psyr_3724	0.85	+0.7
4,433,590	+		Psyr_3724	0.85	+0.2
4,433,590	+		Psyr_3724	0.85	+0.9
4,433,590	+		Psyr_3724	0.85	-1.7
4,433,590	+		Psyr_3724	0.85	+0.9
4,433,590	+		Psyr_3724	0.85	-3.3
4,433,590	+		Psyr_3724	0.85	+0.4
4,433,590	+		Psyr_3724	0.85	+0.4
4,433,591	-		Psyr_3724	0.85	-1.7
4,433,591	-		Psyr_3724	0.85	-0.8
4,433,591	-		Psyr_3724	0.85	-2.1
4,433,591	-		Psyr_3724	0.85	+0.6
4,433,591	-		Psyr_3724	0.85	+0.9
4,433,591	-		Psyr_3724	0.85	+0.5
4,433,591	-		Psyr_3724	0.85	+1.2
4,433,603	+		Psyr_3724	0.86	-0.7
4,433,603	+		Psyr_3724	0.86	+1.1
4,433,603	+		Psyr_3724	0.86	-1.6
4,433,604	-		Psyr_3724	0.86	+1.4
4,433,752	+				-0.9
4,433,752	+				-2.7
4,433,753	-				-0.6
4,433,753	-				+0.6
4,433,753	-				+0.1
4,433,812	+				-0.5
4,433,813	-				+0.4
4,433,857	+				+0.1
4,433,857	+				-1.9
4,433,857	+				-0.1
4,433,857	+				-0.6
4,433,857	+				-0.6
4,433,857	+				+0.5
4,433,857	+				+0.5
4,433,857	+				-3.3
4,433,858	-				-0.1
4,433,858	-				+0.5
4,433,858	-				+0.3
4,433,858	-				-0.1
4,433,858	-				+0.6
4,433,860	+				-0.1
4,433,860	+				-1.7
4,433,860	+				+0.8
4,433,860	+				+0.7
4,433,861	-				-1.0
4,433,861	-				-1.0
4,433,861	-				+0.5
4,433,861	-				-0.5
4,433,861	-				+1.3
4,433,861	-				+0.4
4,433,861	-				+0.4
4,433,861	-				+2.2
4,433,864	+				-0.1
4,433,864	+				+1.7
4,433,864	+				-0.1
4,433,865	-				+0.2
4,433,865	-				-0.5
4,433,865	-				+1.0
4,433,865	-				+0.5
4,433,941	+		Psyr_3725	0.11	+0.7
4,433,942	-		Psyr_3725	0.11	+2.0
4,433,963	+		Psyr_3725	0.12	+0.2
4,433,963	+		Psyr_3725	0.12	+1.9
4,433,963	+		Psyr_3725	0.12	-0.6
4,433,963	+		Psyr_3725	0.12	+1.4
4,433,963	+		Psyr_3725	0.12	+0.2
4,433,963	+		Psyr_3725	0.12	-1.7
4,433,963	+		Psyr_3725	0.12	-1.5
4,433,963	+		Psyr_3725	0.12	-0.8
4,433,963	+		Psyr_3725	0.12	+0.6
4,433,963	+		Psyr_3725	0.12	-0.6
4,433,963	+		Psyr_3725	0.12	+2.4
4,433,964	-		Psyr_3725	0.12	+1.9
4,433,964	-		Psyr_3725	0.12	-1.4
4,433,964	-		Psyr_3725	0.12	-1.8
4,433,964	-		Psyr_3725	0.12	+0.3
4,433,970	-		Psyr_3725	0.12	-3.0
4,433,970	-		Psyr_3725	0.12	+0.9
4,433,970	-		Psyr_3725	0.12	+0.9
4,434,042	+		Psyr_3725	0.17	+1.0
4,434,042	+		Psyr_3725	0.17	+1.0
4,434,042	+		Psyr_3725	0.17	+1.2
4,434,042	+		Psyr_3725	0.17	+1.1
4,434,042	+		Psyr_3725	0.17	-2.1
4,434,160	+		Psyr_3725	0.25	+1.2
4,434,225	+		Psyr_3725	0.29	-0.1
4,434,225	+		Psyr_3725	0.29	+0.5
4,434,236	+		Psyr_3725	0.30	+2.9
4,434,237	-		Psyr_3725	0.30	+0.6
4,434,304	+		Psyr_3725	0.34	+1.1
4,434,305	-		Psyr_3725	0.34	-0.8
4,434,305	-		Psyr_3725	0.34	-0.1
4,434,309	+		Psyr_3725	0.34	+1.4
4,434,309	+		Psyr_3725	0.34	-1.8
4,434,310	-		Psyr_3725	0.34	+2.2
4,434,350	+		Psyr_3725	0.37	+1.6
4,434,352	+		Psyr_3725	0.37	-0.4
4,434,353	-		Psyr_3725	0.37	-1.0
4,434,353	-		Psyr_3725	0.37	-0.7
4,434,353	-		Psyr_3725	0.37	+1.2
4,434,404	+		Psyr_3725	0.40	+1.3
4,434,404	+		Psyr_3725	0.40	+2.4
4,434,404	+		Psyr_3725	0.40	-1.9
4,434,405	-		Psyr_3725	0.40	+0.9
4,434,405	-		Psyr_3725	0.40	+1.0
4,434,405	-		Psyr_3725	0.40	+0.5
4,434,405	-		Psyr_3725	0.40	+0.4
4,434,405	-		Psyr_3725	0.40	+0.1
4,434,405	-		Psyr_3725	0.40	+0.4
4,434,469	+		Psyr_3725	0.45	+0.1
4,434,555	+		Psyr_3725	0.50	+0.1
4,434,565	+		Psyr_3725	0.51	+1.9
4,434,764	-		Psyr_3725	0.64	+1.7
4,434,786	+		Psyr_3725	0.65	+0.3
4,434,795	+		Psyr_3725	0.66	+0.2
4,434,795	+		Psyr_3725	0.66	+1.0
4,434,796	-		Psyr_3725	0.66	+0.5
4,434,886	+		Psyr_3725	0.71	-0.5
4,434,886	+		Psyr_3725	0.71	-0.1
4,434,887	-		Psyr_3725	0.71	+0.7
4,434,887	-		Psyr_3725	0.71	+0.9
4,434,887	-		Psyr_3725	0.71	+0.3
4,434,887	-		Psyr_3725	0.71	-0.1
4,434,890	+		Psyr_3725	0.72	-1.0
4,434,898	+		Psyr_3725	0.72	+0.5
4,434,933	-		Psyr_3725	0.74	+0.6
4,434,944	-		Psyr_3725	0.75	+0.4
4,434,944	-		Psyr_3725	0.75	+1.4
4,434,962	+		Psyr_3725	0.76	+0.7
4,434,963	-		Psyr_3725	0.76	+0.1
4,434,963	-		Psyr_3725	0.76	-1.5
4,434,963	-		Psyr_3725	0.76	-1.0
4,434,963	-		Psyr_3725	0.76	-0.1
4,434,968	-		Psyr_3725	0.77	-0.9
4,434,970	-		Psyr_3725	0.77	-0.1
4,434,970	-		Psyr_3725	0.77	-0.1
4,434,970	-		Psyr_3725	0.77	-0.9
4,434,970	-		Psyr_3725	0.77	-2.5
4,435,131	+		Psyr_3725	0.87	+0.7
4,435,131	+		Psyr_3725	0.87	-0.4
4,435,228	+				-0.5
4,435,261	+				-0.1
4,435,261	+				+2.4
4,435,261	+				+1.0
4,435,262	-				+1.4
4,435,262	-				-0.1
4,435,262	-				+0.4
4,435,262	-				-1.5
4,435,278	+				-3.2
4,435,279	-				-0.0
4,435,346	+				-0.1
4,435,366	+				+0.9
4,435,366	+				+0.0
4,435,366	+				-0.9
4,435,366	+				-0.6
4,435,366	+				-1.1
4,435,366	+				-1.4
4,435,367	-				+0.2
4,435,367	-				-0.1
4,435,370	+				-0.7
4,435,370	+				-0.1
4,435,370	+				+0.5
4,435,370	+				-0.1
4,435,371	-				+1.9
4,435,371	-				-1.1
4,435,371	-				-0.1
4,435,371	-				+0.3
4,435,371	-				+0.8
4,435,371	-				+1.2
4,435,371	-				-0.7
4,435,415	+				-1.1
4,435,415	+				+1.3
4,435,415	+				+0.7
4,435,415	+				-0.5
4,435,415	+				-2.7
4,435,416	-				-0.7
4,435,416	-				+0.9
4,435,419	+				-0.3
4,435,420	-				-0.7
4,435,464	+				+0.3
4,435,583	+				-0.2
4,435,583	+				+0.1
4,435,583	+				-0.1
4,435,584	-				+0.8
4,435,613	+				+0.3
4,435,613	+				+1.7
4,435,613	+				+1.0
4,435,613	+				-0.5
4,435,613	+				-1.1
4,435,614	-				-0.7
4,435,614	-				-0.6
4,435,614	-				-0.1
4,435,614	-				+1.9
4,435,614	-				+1.4
4,435,614	-				-1.8
4,435,614	-				+1.1
4,435,614	-				+1.4
4,435,614	-				-0.6
4,435,614	-				+0.9
4,435,614	-				+2.2
4,435,614	-				-3.5
4,435,614	-				+2.3
4,435,614	-				+0.9
4,435,614	-				+0.3
4,435,614	-				-1.2
4,435,655	+				-1.1
4,435,715	+				+0.7
4,435,715	+				+1.0
4,435,715	+				-0.6
4,435,716	-				-4.0
4,435,716	-				+0.5
4,435,716	-				+0.7
4,435,716	-				+0.9
4,435,716	-				-0.3
4,435,745	+				-0.9
4,435,745	+				+1.0
4,435,745	+				-0.0
4,435,745	+				+1.2
4,435,745	+				+0.4
4,435,746	-				-0.1
4,435,746	-				+0.9
4,435,746	-				+1.3
4,435,746	-				-0.7
4,435,746	-				-0.7
4,435,746	-				-1.1
4,435,746	-				-0.6
4,435,749	+				-0.4
4,435,749	+				+0.1
4,435,749	+				+0.8
4,435,750	-				+1.0
4,435,750	-				+0.6
4,435,750	-				+1.1
4,435,750	-				+0.6
4,435,764	+				-1.9
4,435,764	+				-0.5
4,435,773	+				-0.8
4,436,033	+		Psyr_3726	0.47	+1.3
4,436,055	-		Psyr_3726	0.51	-0.7
4,436,055	-		Psyr_3726	0.51	+1.3
4,436,055	-		Psyr_3726	0.51	-0.1
4,436,184	+		Psyr_3726	0.74	-1.9
4,436,188	+		Psyr_3726	0.74	-0.4
4,436,188	+		Psyr_3726	0.74	-0.4
4,436,188	+		Psyr_3726	0.74	+0.1
4,436,188	+		Psyr_3726	0.74	-0.4
4,436,188	+		Psyr_3726	0.74	+0.0
4,436,188	+		Psyr_3726	0.74	-0.6
4,436,188	+		Psyr_3726	0.74	-0.7
4,436,188	+		Psyr_3726	0.74	+0.3
4,436,188	+		Psyr_3726	0.74	-0.3
4,436,188	+		Psyr_3726	0.74	+1.9
4,436,188	+		Psyr_3726	0.74	-1.3
4,436,188	+		Psyr_3726	0.74	-2.7
4,436,188	+		Psyr_3726	0.74	-0.7
4,436,188	+		Psyr_3726	0.74	-0.3
4,436,189	-		Psyr_3726	0.74	+0.1
4,436,189	-		Psyr_3726	0.74	+0.4
4,436,189	-		Psyr_3726	0.74	-1.5
4,436,189	-		Psyr_3726	0.74	+0.1
4,436,189	-		Psyr_3726	0.74	+1.3
4,436,189	-		Psyr_3726	0.74	+1.4
4,436,189	-		Psyr_3726	0.74	+0.5
4,436,189	-		Psyr_3726	0.74	-1.1
4,436,189	-		Psyr_3726	0.74	+0.6
4,436,189	-		Psyr_3726	0.74	+0.4
4,436,189	-		Psyr_3726	0.74	+0.4
4,436,189	-		Psyr_3726	0.74	+0.5
4,436,189	-		Psyr_3726	0.74	-0.1
4,436,281	+				+0.3
4,436,281	+				-1.5
4,436,281	+				-0.3
4,436,281	+				+1.2
4,436,282	-				-1.7
4,436,282	-				+1.0
4,436,313	+				-1.1
4,436,314	-				-0.4