Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3695

Experiment: 4-hydroxybutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-hydroxybutyric (C)
4,379,653	+				-0.1
4,379,654	-				+1.3
4,379,661	+				-2.3
4,379,661	+				-0.3
4,379,661	+				+1.4
4,379,661	+				-1.6
4,379,661	+				-1.1
4,379,661	+				-1.1
4,379,661	+				+2.0
4,379,661	+				-1.3
4,379,661	+				-2.1
4,379,661	+				-1.7
4,379,661	+				+2.2
4,379,661	+				-1.6
4,379,662	-				+0.5
4,379,662	-				+0.6
4,379,662	-				-0.1
4,379,662	-				-0.5
4,379,662	-				-0.0
4,379,662	-				+0.0
4,379,662	-				-0.7
4,379,662	-				+2.7
4,379,662	-				+0.3
4,379,663	+				-0.1
4,379,663	+				-2.1
4,379,663	+				-0.9
4,379,664	-				-0.3
4,379,664	-				+0.6
4,379,763	-		Psyr_3694	0.10	+0.1
4,380,307	+		Psyr_3694	0.75	-0.1
4,380,307	+		Psyr_3694	0.75	-0.6
4,380,307	+		Psyr_3694	0.75	+0.3
4,380,307	+		Psyr_3694	0.75	-0.5
4,380,307	+		Psyr_3694	0.75	-1.5
4,380,308	-		Psyr_3694	0.75	-0.4
4,380,308	-		Psyr_3694	0.75	-0.3
4,380,391	+		Psyr_3694	0.85	-2.1
4,380,508	+				+1.1
4,380,508	+				+0.5
4,380,508	+				-0.1
4,380,508	+				+2.0
4,380,508	+				+0.1
4,380,508	+				-1.1
4,380,508	+				-0.7
4,380,508	+				-0.1
4,380,508	+				-0.0
4,380,508	+				+0.7
4,380,508	+				+0.7
4,380,508	+				+2.7
4,380,509	-				-2.0
4,380,509	-				-1.7
4,380,509	-				+1.2
4,380,509	-				-1.4
4,380,509	-				-1.1
4,380,509	-				-1.6
4,380,509	-				-0.1
4,380,509	-				-1.1
4,380,509	-				+0.1
4,380,509	-				-1.7
4,380,509	-				-1.7
4,380,509	-				+1.9
4,380,512	+				-1.4
4,380,512	+				-0.6
4,380,512	+				-1.9
4,380,512	+				+2.3
4,380,512	+				+0.6
4,380,513	-				-1.1
4,380,513	-				-1.3
4,380,513	-				-0.9
4,380,513	-				+1.1
4,380,513	-				-1.0
4,380,570	-				+1.0
4,380,570	-				-2.7
4,380,592	-				-0.9
4,380,610	+				+0.9
4,380,610	+				+0.9
4,380,610	+				+0.4
4,380,611	-				+0.1
4,380,611	-				+0.2
4,380,611	-				-0.5
4,380,611	-				+1.1
4,380,624	+				+0.9
4,380,624	+				-0.1
4,380,624	+				-0.7
4,380,625	-				-1.7
4,380,625	-				-1.7
4,380,626	+				+0.5
4,380,626	+				-1.3
4,380,626	+				+0.6
4,380,626	+				+0.4
4,380,626	+				+0.8
4,380,626	+				+0.9
4,380,626	+				+1.1
4,380,626	+				+2.3
4,380,626	+				+1.5
4,380,627	-				+1.6
4,380,627	-				+0.2
4,380,627	-				-2.4
4,380,627	-				-0.4
4,380,627	-				+1.7
4,380,627	-				+1.1
4,380,627	-				+1.4
4,380,627	-				+2.4
4,380,627	-				-1.7
4,380,627	-				-1.0
4,380,627	-				-0.8
4,380,627	-				-0.3
4,380,627	-				+1.4
4,380,631	+				+0.2
4,380,631	+				+1.4
4,380,631	+				-1.4
4,380,631	+				+2.3
4,380,631	+				+1.7
4,380,631	+				+1.7
4,380,631	+				+0.9
4,380,633	+				+0.7
4,380,633	+				+1.0
4,380,633	+				+0.2
4,380,633	+				-0.7
4,380,634	-				+0.4
4,380,634	-				-0.6
4,380,634	-				+0.6
4,380,634	-				-0.4
4,380,634	-				+1.1
4,380,634	-				-0.1
4,380,634	-				-1.1
4,380,634	-				+0.5
4,380,634	-				+0.6
4,380,634	-				+0.3
4,380,634	-				+0.4
4,380,783	-				-1.8
4,380,856	+				-1.7
4,381,004	+		Psyr_3695	0.16	-3.1
4,381,004	+		Psyr_3695	0.16	-3.5
4,381,004	+		Psyr_3695	0.16	-1.7
4,381,005	-		Psyr_3695	0.16	-2.7
4,381,007	-		Psyr_3695	0.16	-3.6
4,381,007	-		Psyr_3695	0.16	-3.8
4,381,411	+		Psyr_3695	0.34	-2.7
4,381,412	-		Psyr_3695	0.34	-3.5
4,381,412	-		Psyr_3695	0.34	-2.5
4,381,412	-		Psyr_3695	0.34	-3.3
4,381,498	+		Psyr_3695	0.38	-2.7
4,381,498	+		Psyr_3695	0.38	-2.1
4,381,498	+		Psyr_3695	0.38	-2.5
4,381,498	+		Psyr_3695	0.38	-1.1
4,381,499	-		Psyr_3695	0.38	-1.1
4,381,499	-		Psyr_3695	0.38	-3.3
4,381,499	-		Psyr_3695	0.38	-1.5
4,381,499	-		Psyr_3695	0.38	-2.1
4,381,544	+		Psyr_3695	0.40	-1.7
4,381,545	-		Psyr_3695	0.40	-1.7
4,381,637	-		Psyr_3695	0.44	-3.5
4,381,747	+		Psyr_3695	0.49	-3.0
4,381,924	+		Psyr_3695	0.57	-3.8
4,381,924	+		Psyr_3695	0.57	-1.7
4,381,924	+		Psyr_3695	0.57	-2.5
4,381,924	+		Psyr_3695	0.57	-1.7
4,381,924	+		Psyr_3695	0.57	-1.5
4,381,925	-		Psyr_3695	0.57	-1.1
4,381,925	-		Psyr_3695	0.57	-3.0
4,381,946	+		Psyr_3695	0.58	-4.1
4,381,946	+		Psyr_3695	0.58	-3.0
4,381,946	+		Psyr_3695	0.58	-0.1
4,381,946	+		Psyr_3695	0.58	-3.6
4,382,032	+		Psyr_3695	0.62	-2.1
4,382,032	+		Psyr_3695	0.62	-3.3
4,382,032	+		Psyr_3695	0.62	-3.0
4,382,033	-		Psyr_3695	0.62	-1.7
4,382,033	-		Psyr_3695	0.62	-3.3
4,382,033	-		Psyr_3695	0.62	-1.7
4,382,033	-		Psyr_3695	0.62	-1.7
4,382,033	-		Psyr_3695	0.62	-2.1
4,382,083	+		Psyr_3695	0.64	-0.1
4,382,083	+		Psyr_3695	0.64	-2.7
4,382,083	+		Psyr_3695	0.64	-3.7
4,382,083	+		Psyr_3695	0.64	-2.5
4,382,083	+		Psyr_3695	0.64	-1.1
4,382,083	+		Psyr_3695	0.64	+0.9
4,382,083	+		Psyr_3695	0.64	-2.5
4,382,083	+		Psyr_3695	0.64	-1.7
4,382,083	+		Psyr_3695	0.64	-1.7
4,382,084	-		Psyr_3695	0.64	-2.5
4,382,084	-		Psyr_3695	0.64	-0.1
4,382,087	+		Psyr_3695	0.64	-1.7
4,382,087	+		Psyr_3695	0.64	-4.2
4,382,087	+		Psyr_3695	0.64	-3.1
4,382,087	+		Psyr_3695	0.64	-2.1
4,382,087	+		Psyr_3695	0.64	-2.5
4,382,087	+		Psyr_3695	0.64	-2.7
4,382,087	+		Psyr_3695	0.64	-1.1
4,382,087	+		Psyr_3695	0.64	-2.5
4,382,087	+		Psyr_3695	0.64	-3.3
4,382,088	-		Psyr_3695	0.64	-2.5
4,382,088	-		Psyr_3695	0.64	-4.1
4,382,088	-		Psyr_3695	0.64	-1.1
4,382,088	-		Psyr_3695	0.64	-3.0
4,382,088	-		Psyr_3695	0.64	-2.5
4,382,088	-		Psyr_3695	0.64	-3.1
4,382,088	-		Psyr_3695	0.64	-3.0
4,382,088	-		Psyr_3695	0.64	-1.7
4,382,088	-		Psyr_3695	0.64	-3.3
4,382,222	-		Psyr_3695	0.70	-3.3
4,382,222	-		Psyr_3695	0.70	-1.5
4,382,222	-		Psyr_3695	0.70	-2.7
4,382,273	+		Psyr_3695	0.73	-3.6
4,382,308	+		Psyr_3695	0.74	-0.6
4,382,308	+		Psyr_3695	0.74	-1.7
4,382,309	-		Psyr_3695	0.74	-3.1
4,382,309	-		Psyr_3695	0.74	-2.7
4,382,309	-		Psyr_3695	0.74	-2.1
4,382,309	-		Psyr_3695	0.74	-1.1
4,382,309	-		Psyr_3695	0.74	-1.7
4,382,309	-		Psyr_3695	0.74	-2.5
4,382,309	-		Psyr_3695	0.74	-0.1
4,382,309	-		Psyr_3695	0.74	-1.1
4,382,309	-		Psyr_3695	0.74	-3.8
4,382,309	-		Psyr_3695	0.74	-1.1
4,382,384	+		Psyr_3695	0.78	-3.7
4,382,384	+		Psyr_3695	0.78	-1.7
4,382,385	-		Psyr_3695	0.78	-3.0
4,382,385	-				-1.1
4,382,813	+				-3.8
4,382,813	+				-1.1
4,382,813	+				-1.1
4,382,813	+				-0.1
4,382,813	+				-4.0
4,382,814	-				-2.5
4,382,814	-				-1.1
4,382,814	-				-2.5
4,382,814	-				-1.7
4,382,814	-				-2.5
4,382,814	-				-2.0
4,382,880	+				-0.1
4,382,881	-				-1.1
4,382,892	+				-2.5
4,382,893	-				-0.1
4,383,047	+				+0.0
4,383,047	+				-0.7
4,383,047	+				-0.6
4,383,047	+				-2.1
4,383,047	+				-4.0
4,383,047	+				-3.3
4,383,048	-				+0.7
4,383,048	-				+2.4
4,383,061	-				-0.7
4,383,098	+				-3.0
4,383,120	+				-4.0
4,383,187	+		Psyr_3696	0.11	-0.7
4,383,187	+		Psyr_3696	0.11	-2.1
4,383,188	-		Psyr_3696	0.11	-0.1
4,383,188	-		Psyr_3696	0.11	-1.0
4,383,188	-		Psyr_3696	0.11	+0.4
4,383,353	+		Psyr_3696	0.23	-1.7
4,383,353	+		Psyr_3696	0.23	-3.1
4,383,354	-		Psyr_3696	0.23	-1.1
4,383,849	+		Psyr_3696	0.60	-0.1
4,383,849	+		Psyr_3696	0.60	+0.2
4,383,850	-		Psyr_3696	0.60	-3.0
4,383,850	-		Psyr_3696	0.60	-1.7