Experiment: 4-hydroxybutyric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3332 and Psyr_3333 are separated by 3 nucleotides Psyr_3333 and Psyr_3334 are separated by 34 nucleotides Psyr_3334 and Psyr_3335 are separated by 48 nucleotides
Psyr_3332: Psyr_3332 - FAD linked oxidase, N-terminal, at 3,987,243 to 3,988,301
_3332
Psyr_3333: Psyr_3333 - 4Fe-4S ferredoxin, iron-sulfur binding:Protein of unknown function DUF224, at 3,988,305 to 3,989,537
_3333
Psyr_3334: Psyr_3334 - Protein of unknown function DUF336, at 3,989,572 to 3,989,979
_3334
Psyr_3335: Psyr_3335 - conserved hypothetical protein, at 3,990,028 to 3,990,999
_3335
Position (kb)
3988
3989
3990 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3987.320 kb on - strand at 3987.377 kb on - strand, within Psyr_3332 at 3987.377 kb on - strand, within Psyr_3332 at 3987.411 kb on + strand, within Psyr_3332 at 3987.411 kb on + strand, within Psyr_3332 at 3987.411 kb on + strand, within Psyr_3332 at 3987.411 kb on + strand, within Psyr_3332 at 3987.412 kb on - strand, within Psyr_3332 at 3987.412 kb on - strand, within Psyr_3332 at 3987.412 kb on - strand, within Psyr_3332 at 3987.412 kb on - strand, within Psyr_3332 at 3987.412 kb on - strand, within Psyr_3332 at 3987.412 kb on - strand, within Psyr_3332 at 3987.682 kb on - strand, within Psyr_3332 at 3987.877 kb on + strand, within Psyr_3332 at 3987.877 kb on + strand, within Psyr_3332 at 3987.877 kb on + strand, within Psyr_3332 at 3987.878 kb on - strand, within Psyr_3332 at 3987.878 kb on - strand, within Psyr_3332 at 3987.878 kb on - strand, within Psyr_3332 at 3987.878 kb on - strand, within Psyr_3332 at 3987.878 kb on - strand, within Psyr_3332 at 3987.878 kb on - strand, within Psyr_3332 at 3987.878 kb on - strand, within Psyr_3332 at 3987.878 kb on - strand, within Psyr_3332 at 3987.878 kb on - strand, within Psyr_3332 at 3987.880 kb on + strand, within Psyr_3332 at 3987.881 kb on - strand, within Psyr_3332 at 3987.881 kb on - strand, within Psyr_3332 at 3987.881 kb on - strand, within Psyr_3332 at 3988.030 kb on + strand, within Psyr_3332 at 3988.031 kb on - strand, within Psyr_3332 at 3988.031 kb on - strand, within Psyr_3332 at 3988.131 kb on - strand, within Psyr_3332 at 3988.131 kb on - strand, within Psyr_3332 at 3988.170 kb on + strand, within Psyr_3332 at 3988.288 kb on - strand at 3988.318 kb on + strand at 3988.318 kb on + strand at 3988.318 kb on + strand at 3988.318 kb on + strand at 3988.318 kb on + strand at 3988.318 kb on + strand at 3988.318 kb on + strand at 3988.319 kb on - strand at 3988.319 kb on - strand at 3988.319 kb on - strand at 3988.319 kb on - strand at 3988.319 kb on - strand at 3988.319 kb on - strand at 3988.319 kb on - strand at 3988.319 kb on - strand at 3988.364 kb on + strand at 3988.364 kb on + strand at 3988.364 kb on + strand at 3988.364 kb on + strand at 3988.364 kb on + strand at 3988.365 kb on - strand at 3988.416 kb on + strand at 3988.417 kb on - strand at 3988.461 kb on + strand, within Psyr_3333 at 3988.461 kb on + strand, within Psyr_3333 at 3988.462 kb on - strand, within Psyr_3333 at 3988.462 kb on - strand, within Psyr_3333 at 3988.462 kb on - strand, within Psyr_3333 at 3988.462 kb on - strand, within Psyr_3333 at 3988.480 kb on + strand, within Psyr_3333 at 3988.480 kb on + strand, within Psyr_3333 at 3988.480 kb on + strand, within Psyr_3333 at 3988.481 kb on - strand, within Psyr_3333 at 3988.481 kb on - strand, within Psyr_3333 at 3988.576 kb on - strand, within Psyr_3333 at 3988.768 kb on + strand, within Psyr_3333 at 3988.944 kb on + strand, within Psyr_3333 at 3989.107 kb on - strand, within Psyr_3333 at 3989.229 kb on - strand, within Psyr_3333 at 3989.229 kb on - strand, within Psyr_3333 at 3989.229 kb on - strand, within Psyr_3333 at 3989.284 kb on + strand, within Psyr_3333 at 3989.320 kb on + strand, within Psyr_3333 at 3989.320 kb on + strand, within Psyr_3333 at 3989.320 kb on + strand, within Psyr_3333 at 3989.320 kb on + strand, within Psyr_3333 at 3989.320 kb on + strand, within Psyr_3333 at 3989.320 kb on + strand, within Psyr_3333 at 3989.321 kb on - strand, within Psyr_3333 at 3989.321 kb on - strand, within Psyr_3333 at 3989.321 kb on - strand, within Psyr_3333 at 3989.321 kb on - strand, within Psyr_3333 at 3989.321 kb on - strand, within Psyr_3333 at 3989.321 kb on - strand, within Psyr_3333 at 3989.321 kb on - strand, within Psyr_3333 at 3989.321 kb on - strand, within Psyr_3333 at 3989.321 kb on - strand, within Psyr_3333 at 3989.321 kb on - strand, within Psyr_3333 at 3989.343 kb on + strand, within Psyr_3333 at 3989.343 kb on + strand, within Psyr_3333 at 3989.343 kb on + strand, within Psyr_3333 at 3989.343 kb on + strand, within Psyr_3333 at 3989.343 kb on + strand, within Psyr_3333 at 3989.343 kb on + strand, within Psyr_3333 at 3989.343 kb on + strand, within Psyr_3333 at 3989.344 kb on - strand, within Psyr_3333 at 3989.344 kb on - strand, within Psyr_3333 at 3989.344 kb on - strand, within Psyr_3333 at 3989.344 kb on - strand, within Psyr_3333 at 3989.344 kb on - strand, within Psyr_3333 at 3989.344 kb on - strand, within Psyr_3333 at 3989.542 kb on + strand at 3989.549 kb on + strand at 3989.737 kb on + strand, within Psyr_3334 at 3990.039 kb on - strand at 3990.074 kb on + strand at 3990.074 kb on + strand at 3990.074 kb on + strand at 3990.074 kb on + strand at 3990.074 kb on + strand at 3990.075 kb on - strand at 3990.075 kb on - strand at 3990.075 kb on - strand at 3990.075 kb on - strand at 3990.078 kb on + strand at 3990.078 kb on + strand at 3990.078 kb on + strand at 3990.078 kb on + strand at 3990.079 kb on - strand at 3990.079 kb on - strand at 3990.079 kb on - strand at 3990.079 kb on - strand at 3990.080 kb on + strand at 3990.080 kb on + strand at 3990.080 kb on + strand at 3990.080 kb on + strand at 3990.080 kb on + strand at 3990.080 kb on + strand at 3990.080 kb on + strand at 3990.080 kb on + strand at 3990.080 kb on + strand at 3990.080 kb on + strand at 3990.080 kb on + strand at 3990.080 kb on + strand at 3990.080 kb on + strand at 3990.080 kb on + strand at 3990.080 kb on + strand at 3990.080 kb on + strand at 3990.080 kb on + strand at 3990.080 kb on + strand at 3990.080 kb on + strand at 3990.080 kb on + strand at 3990.080 kb on + strand at 3990.080 kb on + strand at 3990.080 kb on + strand at 3990.080 kb on + strand at 3990.080 kb on + strand at 3990.080 kb on + strand at 3990.080 kb on + strand at 3990.080 kb on + strand at 3990.081 kb on - strand at 3990.081 kb on - strand at 3990.081 kb on - strand at 3990.081 kb on - strand at 3990.081 kb on - strand at 3990.081 kb on - strand at 3990.081 kb on - strand at 3990.081 kb on - strand at 3990.081 kb on - strand at 3990.081 kb on - strand at 3990.081 kb on - strand at 3990.081 kb on - strand at 3990.081 kb on - strand at 3990.081 kb on - strand at 3990.081 kb on - strand at 3990.081 kb on - strand at 3990.081 kb on - strand at 3990.081 kb on - strand at 3990.081 kb on - strand at 3990.081 kb on - strand at 3990.081 kb on - strand at 3990.081 kb on - strand at 3990.081 kb on - strand at 3990.081 kb on - strand at 3990.081 kb on - strand at 3990.081 kb on - strand at 3990.112 kb on + strand at 3990.112 kb on + strand at 3990.112 kb on + strand at 3990.112 kb on + strand at 3990.112 kb on + strand at 3990.112 kb on + strand at 3990.112 kb on + strand at 3990.125 kb on + strand at 3990.176 kb on + strand, within Psyr_3335 at 3990.176 kb on + strand, within Psyr_3335 at 3990.177 kb on - strand, within Psyr_3335 at 3990.177 kb on - strand, within Psyr_3335 at 3990.180 kb on + strand, within Psyr_3335 at 3990.181 kb on - strand, within Psyr_3335 at 3990.181 kb on - strand, within Psyr_3335 at 3990.186 kb on + strand, within Psyr_3335 at 3990.186 kb on + strand, within Psyr_3335 at 3990.186 kb on + strand, within Psyr_3335 at 3990.187 kb on - strand, within Psyr_3335 at 3990.187 kb on - strand, within Psyr_3335 at 3990.188 kb on + strand, within Psyr_3335 at 3990.188 kb on + strand, within Psyr_3335 at 3990.188 kb on + strand, within Psyr_3335 at 3990.188 kb on + strand, within Psyr_3335 at 3990.188 kb on + strand, within Psyr_3335 at 3990.188 kb on + strand, within Psyr_3335 at 3990.188 kb on + strand, within Psyr_3335 at 3990.189 kb on - strand, within Psyr_3335 at 3990.189 kb on - strand, within Psyr_3335 at 3990.189 kb on - strand, within Psyr_3335 at 3990.189 kb on - strand, within Psyr_3335 at 3990.189 kb on - strand, within Psyr_3335 at 3990.189 kb on - strand, within Psyr_3335 at 3990.189 kb on - strand, within Psyr_3335 at 3990.189 kb on - strand, within Psyr_3335 at 3990.189 kb on - strand, within Psyr_3335 at 3990.197 kb on + strand, within Psyr_3335 at 3990.203 kb on + strand, within Psyr_3335 at 3990.203 kb on + strand, within Psyr_3335 at 3990.204 kb on - strand, within Psyr_3335 at 3990.204 kb on - strand, within Psyr_3335 at 3990.204 kb on - strand, within Psyr_3335 at 3990.204 kb on - strand, within Psyr_3335 at 3990.302 kb on + strand, within Psyr_3335 at 3990.302 kb on + strand, within Psyr_3335 at 3990.302 kb on + strand, within Psyr_3335 at 3990.303 kb on - strand, within Psyr_3335 at 3990.303 kb on - strand, within Psyr_3335 at 3990.303 kb on - strand, within Psyr_3335 at 3990.303 kb on - strand, within Psyr_3335 at 3990.326 kb on + strand, within Psyr_3335 at 3990.326 kb on + strand, within Psyr_3335 at 3990.326 kb on + strand, within Psyr_3335 at 3990.326 kb on + strand, within Psyr_3335 at 3990.326 kb on + strand, within Psyr_3335 at 3990.326 kb on + strand, within Psyr_3335 at 3990.327 kb on - strand, within Psyr_3335 at 3990.327 kb on - strand, within Psyr_3335 at 3990.327 kb on - strand, within Psyr_3335 at 3990.327 kb on - strand, within Psyr_3335 at 3990.327 kb on - strand, within Psyr_3335 at 3990.327 kb on - strand, within Psyr_3335 at 3990.399 kb on - strand, within Psyr_3335
Per-strain Table
Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C) remove 3,987,320 - +2.3 3,987,377 - Psyr_3332 0.13 +2.7 3,987,377 - Psyr_3332 0.13 -1.3 3,987,411 + Psyr_3332 0.16 -0.7 3,987,411 + Psyr_3332 0.16 +1.5 3,987,411 + Psyr_3332 0.16 +0.2 3,987,411 + Psyr_3332 0.16 -2.1 3,987,412 - Psyr_3332 0.16 +0.7 3,987,412 - Psyr_3332 0.16 +1.0 3,987,412 - Psyr_3332 0.16 -0.7 3,987,412 - Psyr_3332 0.16 +0.7 3,987,412 - Psyr_3332 0.16 +0.3 3,987,412 - Psyr_3332 0.16 +0.4 3,987,682 - Psyr_3332 0.41 -0.3 3,987,877 + Psyr_3332 0.60 +2.3 3,987,877 + Psyr_3332 0.60 +0.0 3,987,877 + Psyr_3332 0.60 -1.0 3,987,878 - Psyr_3332 0.60 -1.7 3,987,878 - Psyr_3332 0.60 +0.9 3,987,878 - Psyr_3332 0.60 +0.0 3,987,878 - Psyr_3332 0.60 +0.2 3,987,878 - Psyr_3332 0.60 +0.3 3,987,878 - Psyr_3332 0.60 +1.6 3,987,878 - Psyr_3332 0.60 -0.5 3,987,878 - Psyr_3332 0.60 +0.5 3,987,878 - Psyr_3332 0.60 +0.0 3,987,880 + Psyr_3332 0.60 -1.3 3,987,881 - Psyr_3332 0.60 -1.0 3,987,881 - Psyr_3332 0.60 +0.1 3,987,881 - Psyr_3332 0.60 -1.8 3,988,030 + Psyr_3332 0.74 -0.8 3,988,031 - Psyr_3332 0.74 -0.9 3,988,031 - Psyr_3332 0.74 -1.0 3,988,131 - Psyr_3332 0.84 +2.4 3,988,131 - Psyr_3332 0.84 -0.6 3,988,170 + Psyr_3332 0.88 +1.3 3,988,288 - +0.7 3,988,318 + -0.1 3,988,318 + +0.4 3,988,318 + -0.3 3,988,318 + +0.0 3,988,318 + +0.1 3,988,318 + -0.3 3,988,318 + +2.3 3,988,319 - -1.1 3,988,319 - -0.4 3,988,319 - -2.3 3,988,319 - +0.3 3,988,319 - +0.3 3,988,319 - -0.7 3,988,319 - +0.5 3,988,319 - -0.5 3,988,364 + -2.1 3,988,364 + +0.1 3,988,364 + +1.7 3,988,364 + -1.3 3,988,364 + -1.4 3,988,365 - -0.4 3,988,416 + -0.9 3,988,417 - -1.3 3,988,461 + Psyr_3333 0.13 +1.3 3,988,461 + Psyr_3333 0.13 -0.3 3,988,462 - Psyr_3333 0.13 -2.1 3,988,462 - Psyr_3333 0.13 +0.5 3,988,462 - Psyr_3333 0.13 +0.2 3,988,462 - Psyr_3333 0.13 +0.3 3,988,480 + Psyr_3333 0.14 +1.9 3,988,480 + Psyr_3333 0.14 -1.3 3,988,480 + Psyr_3333 0.14 +0.6 3,988,481 - Psyr_3333 0.14 +0.6 3,988,481 - Psyr_3333 0.14 -0.3 3,988,576 - Psyr_3333 0.22 -1.3 3,988,768 + Psyr_3333 0.38 -1.3 3,988,944 + Psyr_3333 0.52 -0.6 3,989,107 - Psyr_3333 0.65 -0.8 3,989,229 - Psyr_3333 0.75 -0.9 3,989,229 - Psyr_3333 0.75 +0.5 3,989,229 - Psyr_3333 0.75 -0.5 3,989,284 + Psyr_3333 0.79 -1.1 3,989,320 + Psyr_3333 0.82 +0.3 3,989,320 + Psyr_3333 0.82 +0.1 3,989,320 + Psyr_3333 0.82 +3.2 3,989,320 + Psyr_3333 0.82 -2.8 3,989,320 + Psyr_3333 0.82 -1.4 3,989,320 + Psyr_3333 0.82 +1.9 3,989,321 - Psyr_3333 0.82 +0.2 3,989,321 - Psyr_3333 0.82 -1.8 3,989,321 - Psyr_3333 0.82 +3.6 3,989,321 - Psyr_3333 0.82 +1.1 3,989,321 - Psyr_3333 0.82 +1.3 3,989,321 - Psyr_3333 0.82 +1.2 3,989,321 - Psyr_3333 0.82 -0.3 3,989,321 - Psyr_3333 0.82 +1.3 3,989,321 - Psyr_3333 0.82 +0.0 3,989,321 - Psyr_3333 0.82 +0.5 3,989,343 + Psyr_3333 0.84 +1.3 3,989,343 + Psyr_3333 0.84 +2.7 3,989,343 + Psyr_3333 0.84 -1.0 3,989,343 + Psyr_3333 0.84 +0.5 3,989,343 + Psyr_3333 0.84 +1.1 3,989,343 + Psyr_3333 0.84 -0.3 3,989,343 + Psyr_3333 0.84 +2.6 3,989,344 - Psyr_3333 0.84 +0.7 3,989,344 - Psyr_3333 0.84 +3.7 3,989,344 - Psyr_3333 0.84 -0.6 3,989,344 - Psyr_3333 0.84 -0.3 3,989,344 - Psyr_3333 0.84 +0.2 3,989,344 - Psyr_3333 0.84 +1.2 3,989,542 + -0.7 3,989,549 + -1.3 3,989,737 + Psyr_3334 0.40 +0.7 3,990,039 - -0.3 3,990,074 + -0.2 3,990,074 + -1.3 3,990,074 + -1.0 3,990,074 + -0.1 3,990,074 + +3.3 3,990,075 - -0.4 3,990,075 - +0.2 3,990,075 - +0.2 3,990,075 - -3.0 3,990,078 + -0.4 3,990,078 + -1.4 3,990,078 + +1.5 3,990,078 + +0.1 3,990,079 - -0.0 3,990,079 - +1.6 3,990,079 - -0.5 3,990,079 - -0.8 3,990,080 + -0.3 3,990,080 + -0.3 3,990,080 + +0.1 3,990,080 + +0.3 3,990,080 + +2.6 3,990,080 + -2.6 3,990,080 + -1.3 3,990,080 + -0.8 3,990,080 + -0.4 3,990,080 + +0.3 3,990,080 + +0.3 3,990,080 + +0.6 3,990,080 + -2.1 3,990,080 + -1.8 3,990,080 + +0.7 3,990,080 + +0.4 3,990,080 + +0.1 3,990,080 + -0.8 3,990,080 + +1.7 3,990,080 + +1.9 3,990,080 + +1.6 3,990,080 + +0.7 3,990,080 + +1.0 3,990,080 + -1.3 3,990,080 + +0.4 3,990,080 + -0.0 3,990,080 + +0.4 3,990,080 + +2.1 3,990,081 - +1.1 3,990,081 - -0.3 3,990,081 - -0.3 3,990,081 - +0.1 3,990,081 - -0.6 3,990,081 - -0.3 3,990,081 - -0.8 3,990,081 - +0.2 3,990,081 - -0.7 3,990,081 - -2.1 3,990,081 - +0.7 3,990,081 - -0.6 3,990,081 - +0.7 3,990,081 - -1.5 3,990,081 - +0.7 3,990,081 - +0.2 3,990,081 - -0.1 3,990,081 - +2.6 3,990,081 - -1.1 3,990,081 - -1.8 3,990,081 - -0.8 3,990,081 - -0.4 3,990,081 - +0.7 3,990,081 - -1.0 3,990,081 - +0.2 3,990,081 - -0.1 3,990,112 + -0.4 3,990,112 + +1.1 3,990,112 + -0.8 3,990,112 + -0.7 3,990,112 + -1.3 3,990,112 + -0.8 3,990,112 + -0.7 3,990,125 + +0.1 3,990,176 + Psyr_3335 0.15 -0.9 3,990,176 + Psyr_3335 0.15 -1.3 3,990,177 - Psyr_3335 0.15 -0.3 3,990,177 - Psyr_3335 0.15 -1.1 3,990,180 + Psyr_3335 0.16 -0.8 3,990,181 - Psyr_3335 0.16 -0.3 3,990,181 - Psyr_3335 0.16 +2.7 3,990,186 + Psyr_3335 0.16 +0.4 3,990,186 + Psyr_3335 0.16 -1.0 3,990,186 + Psyr_3335 0.16 +0.5 3,990,187 - Psyr_3335 0.16 -0.4 3,990,187 - Psyr_3335 0.16 +0.7 3,990,188 + Psyr_3335 0.16 -0.4 3,990,188 + Psyr_3335 0.16 +0.7 3,990,188 + Psyr_3335 0.16 -0.3 3,990,188 + Psyr_3335 0.16 -1.8 3,990,188 + Psyr_3335 0.16 +3.7 3,990,188 + Psyr_3335 0.16 +1.5 3,990,188 + Psyr_3335 0.16 -0.3 3,990,189 - Psyr_3335 0.17 +0.4 3,990,189 - Psyr_3335 0.17 -3.3 3,990,189 - Psyr_3335 0.17 -0.3 3,990,189 - Psyr_3335 0.17 -0.6 3,990,189 - Psyr_3335 0.17 +0.6 3,990,189 - Psyr_3335 0.17 -1.0 3,990,189 - Psyr_3335 0.17 +0.7 3,990,189 - Psyr_3335 0.17 +2.8 3,990,189 - Psyr_3335 0.17 -0.3 3,990,197 + Psyr_3335 0.17 +0.2 3,990,203 + Psyr_3335 0.18 +1.3 3,990,203 + Psyr_3335 0.18 -2.0 3,990,204 - Psyr_3335 0.18 +0.0 3,990,204 - Psyr_3335 0.18 -0.1 3,990,204 - Psyr_3335 0.18 -1.5 3,990,204 - Psyr_3335 0.18 -0.5 3,990,302 + Psyr_3335 0.28 +0.6 3,990,302 + Psyr_3335 0.28 +0.7 3,990,302 + Psyr_3335 0.28 -1.0 3,990,303 - Psyr_3335 0.28 +0.7 3,990,303 - Psyr_3335 0.28 +0.7 3,990,303 - Psyr_3335 0.28 +1.5 3,990,303 - Psyr_3335 0.28 -0.1 3,990,326 + Psyr_3335 0.31 +0.0 3,990,326 + Psyr_3335 0.31 +0.4 3,990,326 + Psyr_3335 0.31 -0.3 3,990,326 + Psyr_3335 0.31 -0.5 3,990,326 + Psyr_3335 0.31 -0.7 3,990,326 + Psyr_3335 0.31 +0.7 3,990,327 - Psyr_3335 0.31 +0.4 3,990,327 - Psyr_3335 0.31 +0.3 3,990,327 - Psyr_3335 0.31 +1.0 3,990,327 - Psyr_3335 0.31 +1.9 3,990,327 - Psyr_3335 0.31 +1.3 3,990,327 - Psyr_3335 0.31 -1.8 3,990,399 - Psyr_3335 0.38 +0.6
Or see this region's nucleotide sequence