Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3333

Experiment: 4-hydroxybutyric (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_3332 and Psyr_3333 are separated by 3 nucleotidesPsyr_3333 and Psyr_3334 are separated by 34 nucleotidesPsyr_3334 and Psyr_3335 are separated by 48 nucleotides Psyr_3332: Psyr_3332 - FAD linked oxidase, N-terminal, at 3,987,243 to 3,988,301 _3332 Psyr_3333: Psyr_3333 - 4Fe-4S ferredoxin, iron-sulfur binding:Protein of unknown function DUF224, at 3,988,305 to 3,989,537 _3333 Psyr_3334: Psyr_3334 - Protein of unknown function DUF336, at 3,989,572 to 3,989,979 _3334 Psyr_3335: Psyr_3335 - conserved hypothetical protein, at 3,990,028 to 3,990,999 _3335 Position (kb) 3988 3989 3990Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3987.320 kb on - strandat 3987.377 kb on - strand, within Psyr_3332at 3987.377 kb on - strand, within Psyr_3332at 3987.411 kb on + strand, within Psyr_3332at 3987.411 kb on + strand, within Psyr_3332at 3987.411 kb on + strand, within Psyr_3332at 3987.411 kb on + strand, within Psyr_3332at 3987.412 kb on - strand, within Psyr_3332at 3987.412 kb on - strand, within Psyr_3332at 3987.412 kb on - strand, within Psyr_3332at 3987.412 kb on - strand, within Psyr_3332at 3987.412 kb on - strand, within Psyr_3332at 3987.412 kb on - strand, within Psyr_3332at 3987.682 kb on - strand, within Psyr_3332at 3987.877 kb on + strand, within Psyr_3332at 3987.877 kb on + strand, within Psyr_3332at 3987.877 kb on + strand, within Psyr_3332at 3987.878 kb on - strand, within Psyr_3332at 3987.878 kb on - strand, within Psyr_3332at 3987.878 kb on - strand, within Psyr_3332at 3987.878 kb on - strand, within Psyr_3332at 3987.878 kb on - strand, within Psyr_3332at 3987.878 kb on - strand, within Psyr_3332at 3987.878 kb on - strand, within Psyr_3332at 3987.878 kb on - strand, within Psyr_3332at 3987.878 kb on - strand, within Psyr_3332at 3987.880 kb on + strand, within Psyr_3332at 3987.881 kb on - strand, within Psyr_3332at 3987.881 kb on - strand, within Psyr_3332at 3987.881 kb on - strand, within Psyr_3332at 3988.030 kb on + strand, within Psyr_3332at 3988.031 kb on - strand, within Psyr_3332at 3988.031 kb on - strand, within Psyr_3332at 3988.131 kb on - strand, within Psyr_3332at 3988.131 kb on - strand, within Psyr_3332at 3988.170 kb on + strand, within Psyr_3332at 3988.288 kb on - strandat 3988.318 kb on + strandat 3988.318 kb on + strandat 3988.318 kb on + strandat 3988.318 kb on + strandat 3988.318 kb on + strandat 3988.318 kb on + strandat 3988.318 kb on + strandat 3988.319 kb on - strandat 3988.319 kb on - strandat 3988.319 kb on - strandat 3988.319 kb on - strandat 3988.319 kb on - strandat 3988.319 kb on - strandat 3988.319 kb on - strandat 3988.319 kb on - strandat 3988.364 kb on + strandat 3988.364 kb on + strandat 3988.364 kb on + strandat 3988.364 kb on + strandat 3988.364 kb on + strandat 3988.365 kb on - strandat 3988.416 kb on + strandat 3988.417 kb on - strandat 3988.461 kb on + strand, within Psyr_3333at 3988.461 kb on + strand, within Psyr_3333at 3988.462 kb on - strand, within Psyr_3333at 3988.462 kb on - strand, within Psyr_3333at 3988.462 kb on - strand, within Psyr_3333at 3988.462 kb on - strand, within Psyr_3333at 3988.480 kb on + strand, within Psyr_3333at 3988.480 kb on + strand, within Psyr_3333at 3988.480 kb on + strand, within Psyr_3333at 3988.481 kb on - strand, within Psyr_3333at 3988.481 kb on - strand, within Psyr_3333at 3988.576 kb on - strand, within Psyr_3333at 3988.768 kb on + strand, within Psyr_3333at 3988.944 kb on + strand, within Psyr_3333at 3989.107 kb on - strand, within Psyr_3333at 3989.229 kb on - strand, within Psyr_3333at 3989.229 kb on - strand, within Psyr_3333at 3989.229 kb on - strand, within Psyr_3333at 3989.284 kb on + strand, within Psyr_3333at 3989.320 kb on + strand, within Psyr_3333at 3989.320 kb on + strand, within Psyr_3333at 3989.320 kb on + strand, within Psyr_3333at 3989.320 kb on + strand, within Psyr_3333at 3989.320 kb on + strand, within Psyr_3333at 3989.320 kb on + strand, within Psyr_3333at 3989.321 kb on - strand, within Psyr_3333at 3989.321 kb on - strand, within Psyr_3333at 3989.321 kb on - strand, within Psyr_3333at 3989.321 kb on - strand, within Psyr_3333at 3989.321 kb on - strand, within Psyr_3333at 3989.321 kb on - strand, within Psyr_3333at 3989.321 kb on - strand, within Psyr_3333at 3989.321 kb on - strand, within Psyr_3333at 3989.321 kb on - strand, within Psyr_3333at 3989.321 kb on - strand, within Psyr_3333at 3989.343 kb on + strand, within Psyr_3333at 3989.343 kb on + strand, within Psyr_3333at 3989.343 kb on + strand, within Psyr_3333at 3989.343 kb on + strand, within Psyr_3333at 3989.343 kb on + strand, within Psyr_3333at 3989.343 kb on + strand, within Psyr_3333at 3989.343 kb on + strand, within Psyr_3333at 3989.344 kb on - strand, within Psyr_3333at 3989.344 kb on - strand, within Psyr_3333at 3989.344 kb on - strand, within Psyr_3333at 3989.344 kb on - strand, within Psyr_3333at 3989.344 kb on - strand, within Psyr_3333at 3989.344 kb on - strand, within Psyr_3333at 3989.542 kb on + strandat 3989.549 kb on + strandat 3989.737 kb on + strand, within Psyr_3334at 3990.039 kb on - strandat 3990.074 kb on + strandat 3990.074 kb on + strandat 3990.074 kb on + strandat 3990.074 kb on + strandat 3990.074 kb on + strandat 3990.075 kb on - strandat 3990.075 kb on - strandat 3990.075 kb on - strandat 3990.075 kb on - strandat 3990.078 kb on + strandat 3990.078 kb on + strandat 3990.078 kb on + strandat 3990.078 kb on + strandat 3990.079 kb on - strandat 3990.079 kb on - strandat 3990.079 kb on - strandat 3990.079 kb on - strandat 3990.080 kb on + strandat 3990.080 kb on + strandat 3990.080 kb on + strandat 3990.080 kb on + strandat 3990.080 kb on + strandat 3990.080 kb on + strandat 3990.080 kb on + strandat 3990.080 kb on + strandat 3990.080 kb on + strandat 3990.080 kb on + strandat 3990.080 kb on + strandat 3990.080 kb on + strandat 3990.080 kb on + strandat 3990.080 kb on + strandat 3990.080 kb on + strandat 3990.080 kb on + strandat 3990.080 kb on + strandat 3990.080 kb on + strandat 3990.080 kb on + strandat 3990.080 kb on + strandat 3990.080 kb on + strandat 3990.080 kb on + strandat 3990.080 kb on + strandat 3990.080 kb on + strandat 3990.080 kb on + strandat 3990.080 kb on + strandat 3990.080 kb on + strandat 3990.080 kb on + strandat 3990.081 kb on - strandat 3990.081 kb on - strandat 3990.081 kb on - strandat 3990.081 kb on - strandat 3990.081 kb on - strandat 3990.081 kb on - strandat 3990.081 kb on - strandat 3990.081 kb on - strandat 3990.081 kb on - strandat 3990.081 kb on - strandat 3990.081 kb on - strandat 3990.081 kb on - strandat 3990.081 kb on - strandat 3990.081 kb on - strandat 3990.081 kb on - strandat 3990.081 kb on - strandat 3990.081 kb on - strandat 3990.081 kb on - strandat 3990.081 kb on - strandat 3990.081 kb on - strandat 3990.081 kb on - strandat 3990.081 kb on - strandat 3990.081 kb on - strandat 3990.081 kb on - strandat 3990.081 kb on - strandat 3990.081 kb on - strandat 3990.112 kb on + strandat 3990.112 kb on + strandat 3990.112 kb on + strandat 3990.112 kb on + strandat 3990.112 kb on + strandat 3990.112 kb on + strandat 3990.112 kb on + strandat 3990.125 kb on + strandat 3990.176 kb on + strand, within Psyr_3335at 3990.176 kb on + strand, within Psyr_3335at 3990.177 kb on - strand, within Psyr_3335at 3990.177 kb on - strand, within Psyr_3335at 3990.180 kb on + strand, within Psyr_3335at 3990.181 kb on - strand, within Psyr_3335at 3990.181 kb on - strand, within Psyr_3335at 3990.186 kb on + strand, within Psyr_3335at 3990.186 kb on + strand, within Psyr_3335at 3990.186 kb on + strand, within Psyr_3335at 3990.187 kb on - strand, within Psyr_3335at 3990.187 kb on - strand, within Psyr_3335at 3990.188 kb on + strand, within Psyr_3335at 3990.188 kb on + strand, within Psyr_3335at 3990.188 kb on + strand, within Psyr_3335at 3990.188 kb on + strand, within Psyr_3335at 3990.188 kb on + strand, within Psyr_3335at 3990.188 kb on + strand, within Psyr_3335at 3990.188 kb on + strand, within Psyr_3335at 3990.189 kb on - strand, within Psyr_3335at 3990.189 kb on - strand, within Psyr_3335at 3990.189 kb on - strand, within Psyr_3335at 3990.189 kb on - strand, within Psyr_3335at 3990.189 kb on - strand, within Psyr_3335at 3990.189 kb on - strand, within Psyr_3335at 3990.189 kb on - strand, within Psyr_3335at 3990.189 kb on - strand, within Psyr_3335at 3990.189 kb on - strand, within Psyr_3335at 3990.197 kb on + strand, within Psyr_3335at 3990.203 kb on + strand, within Psyr_3335at 3990.203 kb on + strand, within Psyr_3335at 3990.204 kb on - strand, within Psyr_3335at 3990.204 kb on - strand, within Psyr_3335at 3990.204 kb on - strand, within Psyr_3335at 3990.204 kb on - strand, within Psyr_3335at 3990.302 kb on + strand, within Psyr_3335at 3990.302 kb on + strand, within Psyr_3335at 3990.302 kb on + strand, within Psyr_3335at 3990.303 kb on - strand, within Psyr_3335at 3990.303 kb on - strand, within Psyr_3335at 3990.303 kb on - strand, within Psyr_3335at 3990.303 kb on - strand, within Psyr_3335at 3990.326 kb on + strand, within Psyr_3335at 3990.326 kb on + strand, within Psyr_3335at 3990.326 kb on + strand, within Psyr_3335at 3990.326 kb on + strand, within Psyr_3335at 3990.326 kb on + strand, within Psyr_3335at 3990.326 kb on + strand, within Psyr_3335at 3990.327 kb on - strand, within Psyr_3335at 3990.327 kb on - strand, within Psyr_3335at 3990.327 kb on - strand, within Psyr_3335at 3990.327 kb on - strand, within Psyr_3335at 3990.327 kb on - strand, within Psyr_3335at 3990.327 kb on - strand, within Psyr_3335at 3990.399 kb on - strand, within Psyr_3335

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C)
remove
3,987,320 - +2.3
3,987,377 - Psyr_3332 0.13 +2.7
3,987,377 - Psyr_3332 0.13 -1.3
3,987,411 + Psyr_3332 0.16 -0.7
3,987,411 + Psyr_3332 0.16 +1.5
3,987,411 + Psyr_3332 0.16 +0.2
3,987,411 + Psyr_3332 0.16 -2.1
3,987,412 - Psyr_3332 0.16 +0.7
3,987,412 - Psyr_3332 0.16 +1.0
3,987,412 - Psyr_3332 0.16 -0.7
3,987,412 - Psyr_3332 0.16 +0.7
3,987,412 - Psyr_3332 0.16 +0.3
3,987,412 - Psyr_3332 0.16 +0.4
3,987,682 - Psyr_3332 0.41 -0.3
3,987,877 + Psyr_3332 0.60 +2.3
3,987,877 + Psyr_3332 0.60 +0.0
3,987,877 + Psyr_3332 0.60 -1.0
3,987,878 - Psyr_3332 0.60 -1.7
3,987,878 - Psyr_3332 0.60 +0.9
3,987,878 - Psyr_3332 0.60 +0.0
3,987,878 - Psyr_3332 0.60 +0.2
3,987,878 - Psyr_3332 0.60 +0.3
3,987,878 - Psyr_3332 0.60 +1.6
3,987,878 - Psyr_3332 0.60 -0.5
3,987,878 - Psyr_3332 0.60 +0.5
3,987,878 - Psyr_3332 0.60 +0.0
3,987,880 + Psyr_3332 0.60 -1.3
3,987,881 - Psyr_3332 0.60 -1.0
3,987,881 - Psyr_3332 0.60 +0.1
3,987,881 - Psyr_3332 0.60 -1.8
3,988,030 + Psyr_3332 0.74 -0.8
3,988,031 - Psyr_3332 0.74 -0.9
3,988,031 - Psyr_3332 0.74 -1.0
3,988,131 - Psyr_3332 0.84 +2.4
3,988,131 - Psyr_3332 0.84 -0.6
3,988,170 + Psyr_3332 0.88 +1.3
3,988,288 - +0.7
3,988,318 + -0.1
3,988,318 + +0.4
3,988,318 + -0.3
3,988,318 + +0.0
3,988,318 + +0.1
3,988,318 + -0.3
3,988,318 + +2.3
3,988,319 - -1.1
3,988,319 - -0.4
3,988,319 - -2.3
3,988,319 - +0.3
3,988,319 - +0.3
3,988,319 - -0.7
3,988,319 - +0.5
3,988,319 - -0.5
3,988,364 + -2.1
3,988,364 + +0.1
3,988,364 + +1.7
3,988,364 + -1.3
3,988,364 + -1.4
3,988,365 - -0.4
3,988,416 + -0.9
3,988,417 - -1.3
3,988,461 + Psyr_3333 0.13 +1.3
3,988,461 + Psyr_3333 0.13 -0.3
3,988,462 - Psyr_3333 0.13 -2.1
3,988,462 - Psyr_3333 0.13 +0.5
3,988,462 - Psyr_3333 0.13 +0.2
3,988,462 - Psyr_3333 0.13 +0.3
3,988,480 + Psyr_3333 0.14 +1.9
3,988,480 + Psyr_3333 0.14 -1.3
3,988,480 + Psyr_3333 0.14 +0.6
3,988,481 - Psyr_3333 0.14 +0.6
3,988,481 - Psyr_3333 0.14 -0.3
3,988,576 - Psyr_3333 0.22 -1.3
3,988,768 + Psyr_3333 0.38 -1.3
3,988,944 + Psyr_3333 0.52 -0.6
3,989,107 - Psyr_3333 0.65 -0.8
3,989,229 - Psyr_3333 0.75 -0.9
3,989,229 - Psyr_3333 0.75 +0.5
3,989,229 - Psyr_3333 0.75 -0.5
3,989,284 + Psyr_3333 0.79 -1.1
3,989,320 + Psyr_3333 0.82 +0.3
3,989,320 + Psyr_3333 0.82 +0.1
3,989,320 + Psyr_3333 0.82 +3.2
3,989,320 + Psyr_3333 0.82 -2.8
3,989,320 + Psyr_3333 0.82 -1.4
3,989,320 + Psyr_3333 0.82 +1.9
3,989,321 - Psyr_3333 0.82 +0.2
3,989,321 - Psyr_3333 0.82 -1.8
3,989,321 - Psyr_3333 0.82 +3.6
3,989,321 - Psyr_3333 0.82 +1.1
3,989,321 - Psyr_3333 0.82 +1.3
3,989,321 - Psyr_3333 0.82 +1.2
3,989,321 - Psyr_3333 0.82 -0.3
3,989,321 - Psyr_3333 0.82 +1.3
3,989,321 - Psyr_3333 0.82 +0.0
3,989,321 - Psyr_3333 0.82 +0.5
3,989,343 + Psyr_3333 0.84 +1.3
3,989,343 + Psyr_3333 0.84 +2.7
3,989,343 + Psyr_3333 0.84 -1.0
3,989,343 + Psyr_3333 0.84 +0.5
3,989,343 + Psyr_3333 0.84 +1.1
3,989,343 + Psyr_3333 0.84 -0.3
3,989,343 + Psyr_3333 0.84 +2.6
3,989,344 - Psyr_3333 0.84 +0.7
3,989,344 - Psyr_3333 0.84 +3.7
3,989,344 - Psyr_3333 0.84 -0.6
3,989,344 - Psyr_3333 0.84 -0.3
3,989,344 - Psyr_3333 0.84 +0.2
3,989,344 - Psyr_3333 0.84 +1.2
3,989,542 + -0.7
3,989,549 + -1.3
3,989,737 + Psyr_3334 0.40 +0.7
3,990,039 - -0.3
3,990,074 + -0.2
3,990,074 + -1.3
3,990,074 + -1.0
3,990,074 + -0.1
3,990,074 + +3.3
3,990,075 - -0.4
3,990,075 - +0.2
3,990,075 - +0.2
3,990,075 - -3.0
3,990,078 + -0.4
3,990,078 + -1.4
3,990,078 + +1.5
3,990,078 + +0.1
3,990,079 - -0.0
3,990,079 - +1.6
3,990,079 - -0.5
3,990,079 - -0.8
3,990,080 + -0.3
3,990,080 + -0.3
3,990,080 + +0.1
3,990,080 + +0.3
3,990,080 + +2.6
3,990,080 + -2.6
3,990,080 + -1.3
3,990,080 + -0.8
3,990,080 + -0.4
3,990,080 + +0.3
3,990,080 + +0.3
3,990,080 + +0.6
3,990,080 + -2.1
3,990,080 + -1.8
3,990,080 + +0.7
3,990,080 + +0.4
3,990,080 + +0.1
3,990,080 + -0.8
3,990,080 + +1.7
3,990,080 + +1.9
3,990,080 + +1.6
3,990,080 + +0.7
3,990,080 + +1.0
3,990,080 + -1.3
3,990,080 + +0.4
3,990,080 + -0.0
3,990,080 + +0.4
3,990,080 + +2.1
3,990,081 - +1.1
3,990,081 - -0.3
3,990,081 - -0.3
3,990,081 - +0.1
3,990,081 - -0.6
3,990,081 - -0.3
3,990,081 - -0.8
3,990,081 - +0.2
3,990,081 - -0.7
3,990,081 - -2.1
3,990,081 - +0.7
3,990,081 - -0.6
3,990,081 - +0.7
3,990,081 - -1.5
3,990,081 - +0.7
3,990,081 - +0.2
3,990,081 - -0.1
3,990,081 - +2.6
3,990,081 - -1.1
3,990,081 - -1.8
3,990,081 - -0.8
3,990,081 - -0.4
3,990,081 - +0.7
3,990,081 - -1.0
3,990,081 - +0.2
3,990,081 - -0.1
3,990,112 + -0.4
3,990,112 + +1.1
3,990,112 + -0.8
3,990,112 + -0.7
3,990,112 + -1.3
3,990,112 + -0.8
3,990,112 + -0.7
3,990,125 + +0.1
3,990,176 + Psyr_3335 0.15 -0.9
3,990,176 + Psyr_3335 0.15 -1.3
3,990,177 - Psyr_3335 0.15 -0.3
3,990,177 - Psyr_3335 0.15 -1.1
3,990,180 + Psyr_3335 0.16 -0.8
3,990,181 - Psyr_3335 0.16 -0.3
3,990,181 - Psyr_3335 0.16 +2.7
3,990,186 + Psyr_3335 0.16 +0.4
3,990,186 + Psyr_3335 0.16 -1.0
3,990,186 + Psyr_3335 0.16 +0.5
3,990,187 - Psyr_3335 0.16 -0.4
3,990,187 - Psyr_3335 0.16 +0.7
3,990,188 + Psyr_3335 0.16 -0.4
3,990,188 + Psyr_3335 0.16 +0.7
3,990,188 + Psyr_3335 0.16 -0.3
3,990,188 + Psyr_3335 0.16 -1.8
3,990,188 + Psyr_3335 0.16 +3.7
3,990,188 + Psyr_3335 0.16 +1.5
3,990,188 + Psyr_3335 0.16 -0.3
3,990,189 - Psyr_3335 0.17 +0.4
3,990,189 - Psyr_3335 0.17 -3.3
3,990,189 - Psyr_3335 0.17 -0.3
3,990,189 - Psyr_3335 0.17 -0.6
3,990,189 - Psyr_3335 0.17 +0.6
3,990,189 - Psyr_3335 0.17 -1.0
3,990,189 - Psyr_3335 0.17 +0.7
3,990,189 - Psyr_3335 0.17 +2.8
3,990,189 - Psyr_3335 0.17 -0.3
3,990,197 + Psyr_3335 0.17 +0.2
3,990,203 + Psyr_3335 0.18 +1.3
3,990,203 + Psyr_3335 0.18 -2.0
3,990,204 - Psyr_3335 0.18 +0.0
3,990,204 - Psyr_3335 0.18 -0.1
3,990,204 - Psyr_3335 0.18 -1.5
3,990,204 - Psyr_3335 0.18 -0.5
3,990,302 + Psyr_3335 0.28 +0.6
3,990,302 + Psyr_3335 0.28 +0.7
3,990,302 + Psyr_3335 0.28 -1.0
3,990,303 - Psyr_3335 0.28 +0.7
3,990,303 - Psyr_3335 0.28 +0.7
3,990,303 - Psyr_3335 0.28 +1.5
3,990,303 - Psyr_3335 0.28 -0.1
3,990,326 + Psyr_3335 0.31 +0.0
3,990,326 + Psyr_3335 0.31 +0.4
3,990,326 + Psyr_3335 0.31 -0.3
3,990,326 + Psyr_3335 0.31 -0.5
3,990,326 + Psyr_3335 0.31 -0.7
3,990,326 + Psyr_3335 0.31 +0.7
3,990,327 - Psyr_3335 0.31 +0.4
3,990,327 - Psyr_3335 0.31 +0.3
3,990,327 - Psyr_3335 0.31 +1.0
3,990,327 - Psyr_3335 0.31 +1.9
3,990,327 - Psyr_3335 0.31 +1.3
3,990,327 - Psyr_3335 0.31 -1.8
3,990,399 - Psyr_3335 0.38 +0.6

Or see this region's nucleotide sequence