Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3332

Experiment: 4-hydroxybutyric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3331 and Psyr_3332 overlap by 1 nucleotidesPsyr_3332 and Psyr_3333 are separated by 3 nucleotides Psyr_3331: Psyr_3331 - Glycolate oxidase subunit GlcD, at 3,985,744 to 3,987,243 _3331 Psyr_3332: Psyr_3332 - FAD linked oxidase, N-terminal, at 3,987,243 to 3,988,301 _3332 Psyr_3333: Psyr_3333 - 4Fe-4S ferredoxin, iron-sulfur binding:Protein of unknown function DUF224, at 3,988,305 to 3,989,537 _3333 Position (kb) 3987 3988 3989Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3986.258 kb on - strand, within Psyr_3331at 3986.450 kb on + strand, within Psyr_3331at 3986.450 kb on + strand, within Psyr_3331at 3986.451 kb on - strand, within Psyr_3331at 3986.451 kb on - strand, within Psyr_3331at 3986.794 kb on + strand, within Psyr_3331at 3986.794 kb on + strand, within Psyr_3331at 3986.795 kb on - strand, within Psyr_3331at 3986.797 kb on + strand, within Psyr_3331at 3986.797 kb on + strand, within Psyr_3331at 3986.798 kb on - strand, within Psyr_3331at 3986.798 kb on - strand, within Psyr_3331at 3987.320 kb on - strandat 3987.377 kb on - strand, within Psyr_3332at 3987.377 kb on - strand, within Psyr_3332at 3987.411 kb on + strand, within Psyr_3332at 3987.411 kb on + strand, within Psyr_3332at 3987.411 kb on + strand, within Psyr_3332at 3987.411 kb on + strand, within Psyr_3332at 3987.412 kb on - strand, within Psyr_3332at 3987.412 kb on - strand, within Psyr_3332at 3987.412 kb on - strand, within Psyr_3332at 3987.412 kb on - strand, within Psyr_3332at 3987.412 kb on - strand, within Psyr_3332at 3987.412 kb on - strand, within Psyr_3332at 3987.682 kb on - strand, within Psyr_3332at 3987.877 kb on + strand, within Psyr_3332at 3987.877 kb on + strand, within Psyr_3332at 3987.877 kb on + strand, within Psyr_3332at 3987.878 kb on - strand, within Psyr_3332at 3987.878 kb on - strand, within Psyr_3332at 3987.878 kb on - strand, within Psyr_3332at 3987.878 kb on - strand, within Psyr_3332at 3987.878 kb on - strand, within Psyr_3332at 3987.878 kb on - strand, within Psyr_3332at 3987.878 kb on - strand, within Psyr_3332at 3987.878 kb on - strand, within Psyr_3332at 3987.878 kb on - strand, within Psyr_3332at 3987.880 kb on + strand, within Psyr_3332at 3987.881 kb on - strand, within Psyr_3332at 3987.881 kb on - strand, within Psyr_3332at 3987.881 kb on - strand, within Psyr_3332at 3988.030 kb on + strand, within Psyr_3332at 3988.031 kb on - strand, within Psyr_3332at 3988.031 kb on - strand, within Psyr_3332at 3988.131 kb on - strand, within Psyr_3332at 3988.131 kb on - strand, within Psyr_3332at 3988.170 kb on + strand, within Psyr_3332at 3988.288 kb on - strandat 3988.318 kb on + strandat 3988.318 kb on + strandat 3988.318 kb on + strandat 3988.318 kb on + strandat 3988.318 kb on + strandat 3988.318 kb on + strandat 3988.318 kb on + strandat 3988.319 kb on - strandat 3988.319 kb on - strandat 3988.319 kb on - strandat 3988.319 kb on - strandat 3988.319 kb on - strandat 3988.319 kb on - strandat 3988.319 kb on - strandat 3988.319 kb on - strandat 3988.364 kb on + strandat 3988.364 kb on + strandat 3988.364 kb on + strandat 3988.364 kb on + strandat 3988.364 kb on + strandat 3988.365 kb on - strandat 3988.416 kb on + strandat 3988.417 kb on - strandat 3988.461 kb on + strand, within Psyr_3333at 3988.461 kb on + strand, within Psyr_3333at 3988.462 kb on - strand, within Psyr_3333at 3988.462 kb on - strand, within Psyr_3333at 3988.462 kb on - strand, within Psyr_3333at 3988.462 kb on - strand, within Psyr_3333at 3988.480 kb on + strand, within Psyr_3333at 3988.480 kb on + strand, within Psyr_3333at 3988.480 kb on + strand, within Psyr_3333at 3988.481 kb on - strand, within Psyr_3333at 3988.481 kb on - strand, within Psyr_3333at 3988.576 kb on - strand, within Psyr_3333at 3988.768 kb on + strand, within Psyr_3333at 3988.944 kb on + strand, within Psyr_3333at 3989.107 kb on - strand, within Psyr_3333at 3989.229 kb on - strand, within Psyr_3333at 3989.229 kb on - strand, within Psyr_3333at 3989.229 kb on - strand, within Psyr_3333at 3989.284 kb on + strand, within Psyr_3333

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C)
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3,986,258 - Psyr_3331 0.34 +2.9
3,986,450 + Psyr_3331 0.47 -1.9
3,986,450 + Psyr_3331 0.47 -0.7
3,986,451 - Psyr_3331 0.47 -0.4
3,986,451 - Psyr_3331 0.47 +1.1
3,986,794 + Psyr_3331 0.70 -1.7
3,986,794 + Psyr_3331 0.70 +0.1
3,986,795 - Psyr_3331 0.70 +0.3
3,986,797 + Psyr_3331 0.70 -1.8
3,986,797 + Psyr_3331 0.70 -0.5
3,986,798 - Psyr_3331 0.70 -1.8
3,986,798 - Psyr_3331 0.70 +0.3
3,987,320 - +2.3
3,987,377 - Psyr_3332 0.13 +2.7
3,987,377 - Psyr_3332 0.13 -1.3
3,987,411 + Psyr_3332 0.16 -0.7
3,987,411 + Psyr_3332 0.16 +1.5
3,987,411 + Psyr_3332 0.16 +0.2
3,987,411 + Psyr_3332 0.16 -2.1
3,987,412 - Psyr_3332 0.16 +0.7
3,987,412 - Psyr_3332 0.16 +1.0
3,987,412 - Psyr_3332 0.16 -0.7
3,987,412 - Psyr_3332 0.16 +0.7
3,987,412 - Psyr_3332 0.16 +0.3
3,987,412 - Psyr_3332 0.16 +0.4
3,987,682 - Psyr_3332 0.41 -0.3
3,987,877 + Psyr_3332 0.60 +2.3
3,987,877 + Psyr_3332 0.60 +0.0
3,987,877 + Psyr_3332 0.60 -1.0
3,987,878 - Psyr_3332 0.60 -1.7
3,987,878 - Psyr_3332 0.60 +0.9
3,987,878 - Psyr_3332 0.60 +0.0
3,987,878 - Psyr_3332 0.60 +0.2
3,987,878 - Psyr_3332 0.60 +0.3
3,987,878 - Psyr_3332 0.60 +1.6
3,987,878 - Psyr_3332 0.60 -0.5
3,987,878 - Psyr_3332 0.60 +0.5
3,987,878 - Psyr_3332 0.60 +0.0
3,987,880 + Psyr_3332 0.60 -1.3
3,987,881 - Psyr_3332 0.60 -1.0
3,987,881 - Psyr_3332 0.60 +0.1
3,987,881 - Psyr_3332 0.60 -1.8
3,988,030 + Psyr_3332 0.74 -0.8
3,988,031 - Psyr_3332 0.74 -0.9
3,988,031 - Psyr_3332 0.74 -1.0
3,988,131 - Psyr_3332 0.84 +2.4
3,988,131 - Psyr_3332 0.84 -0.6
3,988,170 + Psyr_3332 0.88 +1.3
3,988,288 - +0.7
3,988,318 + -0.1
3,988,318 + +0.4
3,988,318 + -0.3
3,988,318 + +0.0
3,988,318 + +0.1
3,988,318 + -0.3
3,988,318 + +2.3
3,988,319 - -1.1
3,988,319 - -0.4
3,988,319 - -2.3
3,988,319 - +0.3
3,988,319 - +0.3
3,988,319 - -0.7
3,988,319 - +0.5
3,988,319 - -0.5
3,988,364 + -2.1
3,988,364 + +0.1
3,988,364 + +1.7
3,988,364 + -1.3
3,988,364 + -1.4
3,988,365 - -0.4
3,988,416 + -0.9
3,988,417 - -1.3
3,988,461 + Psyr_3333 0.13 +1.3
3,988,461 + Psyr_3333 0.13 -0.3
3,988,462 - Psyr_3333 0.13 -2.1
3,988,462 - Psyr_3333 0.13 +0.5
3,988,462 - Psyr_3333 0.13 +0.2
3,988,462 - Psyr_3333 0.13 +0.3
3,988,480 + Psyr_3333 0.14 +1.9
3,988,480 + Psyr_3333 0.14 -1.3
3,988,480 + Psyr_3333 0.14 +0.6
3,988,481 - Psyr_3333 0.14 +0.6
3,988,481 - Psyr_3333 0.14 -0.3
3,988,576 - Psyr_3333 0.22 -1.3
3,988,768 + Psyr_3333 0.38 -1.3
3,988,944 + Psyr_3333 0.52 -0.6
3,989,107 - Psyr_3333 0.65 -0.8
3,989,229 - Psyr_3333 0.75 -0.9
3,989,229 - Psyr_3333 0.75 +0.5
3,989,229 - Psyr_3333 0.75 -0.5
3,989,284 + Psyr_3333 0.79 -1.1

Or see this region's nucleotide sequence