Experiment: 4-hydroxybutyric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3331 and Psyr_3332 overlap by 1 nucleotides Psyr_3332 and Psyr_3333 are separated by 3 nucleotides
Psyr_3331: Psyr_3331 - Glycolate oxidase subunit GlcD, at 3,985,744 to 3,987,243
_3331
Psyr_3332: Psyr_3332 - FAD linked oxidase, N-terminal, at 3,987,243 to 3,988,301
_3332
Psyr_3333: Psyr_3333 - 4Fe-4S ferredoxin, iron-sulfur binding:Protein of unknown function DUF224, at 3,988,305 to 3,989,537
_3333
Position (kb)
3987
3988
3989 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3986.258 kb on - strand, within Psyr_3331 at 3986.450 kb on + strand, within Psyr_3331 at 3986.450 kb on + strand, within Psyr_3331 at 3986.451 kb on - strand, within Psyr_3331 at 3986.451 kb on - strand, within Psyr_3331 at 3986.794 kb on + strand, within Psyr_3331 at 3986.794 kb on + strand, within Psyr_3331 at 3986.795 kb on - strand, within Psyr_3331 at 3986.797 kb on + strand, within Psyr_3331 at 3986.797 kb on + strand, within Psyr_3331 at 3986.798 kb on - strand, within Psyr_3331 at 3986.798 kb on - strand, within Psyr_3331 at 3987.320 kb on - strand at 3987.377 kb on - strand, within Psyr_3332 at 3987.377 kb on - strand, within Psyr_3332 at 3987.411 kb on + strand, within Psyr_3332 at 3987.411 kb on + strand, within Psyr_3332 at 3987.411 kb on + strand, within Psyr_3332 at 3987.411 kb on + strand, within Psyr_3332 at 3987.412 kb on - strand, within Psyr_3332 at 3987.412 kb on - strand, within Psyr_3332 at 3987.412 kb on - strand, within Psyr_3332 at 3987.412 kb on - strand, within Psyr_3332 at 3987.412 kb on - strand, within Psyr_3332 at 3987.412 kb on - strand, within Psyr_3332 at 3987.682 kb on - strand, within Psyr_3332 at 3987.877 kb on + strand, within Psyr_3332 at 3987.877 kb on + strand, within Psyr_3332 at 3987.877 kb on + strand, within Psyr_3332 at 3987.878 kb on - strand, within Psyr_3332 at 3987.878 kb on - strand, within Psyr_3332 at 3987.878 kb on - strand, within Psyr_3332 at 3987.878 kb on - strand, within Psyr_3332 at 3987.878 kb on - strand, within Psyr_3332 at 3987.878 kb on - strand, within Psyr_3332 at 3987.878 kb on - strand, within Psyr_3332 at 3987.878 kb on - strand, within Psyr_3332 at 3987.878 kb on - strand, within Psyr_3332 at 3987.880 kb on + strand, within Psyr_3332 at 3987.881 kb on - strand, within Psyr_3332 at 3987.881 kb on - strand, within Psyr_3332 at 3987.881 kb on - strand, within Psyr_3332 at 3988.030 kb on + strand, within Psyr_3332 at 3988.031 kb on - strand, within Psyr_3332 at 3988.031 kb on - strand, within Psyr_3332 at 3988.131 kb on - strand, within Psyr_3332 at 3988.131 kb on - strand, within Psyr_3332 at 3988.170 kb on + strand, within Psyr_3332 at 3988.288 kb on - strand at 3988.318 kb on + strand at 3988.318 kb on + strand at 3988.318 kb on + strand at 3988.318 kb on + strand at 3988.318 kb on + strand at 3988.318 kb on + strand at 3988.318 kb on + strand at 3988.319 kb on - strand at 3988.319 kb on - strand at 3988.319 kb on - strand at 3988.319 kb on - strand at 3988.319 kb on - strand at 3988.319 kb on - strand at 3988.319 kb on - strand at 3988.319 kb on - strand at 3988.364 kb on + strand at 3988.364 kb on + strand at 3988.364 kb on + strand at 3988.364 kb on + strand at 3988.364 kb on + strand at 3988.365 kb on - strand at 3988.416 kb on + strand at 3988.417 kb on - strand at 3988.461 kb on + strand, within Psyr_3333 at 3988.461 kb on + strand, within Psyr_3333 at 3988.462 kb on - strand, within Psyr_3333 at 3988.462 kb on - strand, within Psyr_3333 at 3988.462 kb on - strand, within Psyr_3333 at 3988.462 kb on - strand, within Psyr_3333 at 3988.480 kb on + strand, within Psyr_3333 at 3988.480 kb on + strand, within Psyr_3333 at 3988.480 kb on + strand, within Psyr_3333 at 3988.481 kb on - strand, within Psyr_3333 at 3988.481 kb on - strand, within Psyr_3333 at 3988.576 kb on - strand, within Psyr_3333 at 3988.768 kb on + strand, within Psyr_3333 at 3988.944 kb on + strand, within Psyr_3333 at 3989.107 kb on - strand, within Psyr_3333 at 3989.229 kb on - strand, within Psyr_3333 at 3989.229 kb on - strand, within Psyr_3333 at 3989.229 kb on - strand, within Psyr_3333 at 3989.284 kb on + strand, within Psyr_3333
Per-strain Table
Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C) remove 3,986,258 - Psyr_3331 0.34 +2.9 3,986,450 + Psyr_3331 0.47 -1.9 3,986,450 + Psyr_3331 0.47 -0.7 3,986,451 - Psyr_3331 0.47 -0.4 3,986,451 - Psyr_3331 0.47 +1.1 3,986,794 + Psyr_3331 0.70 -1.7 3,986,794 + Psyr_3331 0.70 +0.1 3,986,795 - Psyr_3331 0.70 +0.3 3,986,797 + Psyr_3331 0.70 -1.8 3,986,797 + Psyr_3331 0.70 -0.5 3,986,798 - Psyr_3331 0.70 -1.8 3,986,798 - Psyr_3331 0.70 +0.3 3,987,320 - +2.3 3,987,377 - Psyr_3332 0.13 +2.7 3,987,377 - Psyr_3332 0.13 -1.3 3,987,411 + Psyr_3332 0.16 -0.7 3,987,411 + Psyr_3332 0.16 +1.5 3,987,411 + Psyr_3332 0.16 +0.2 3,987,411 + Psyr_3332 0.16 -2.1 3,987,412 - Psyr_3332 0.16 +0.7 3,987,412 - Psyr_3332 0.16 +1.0 3,987,412 - Psyr_3332 0.16 -0.7 3,987,412 - Psyr_3332 0.16 +0.7 3,987,412 - Psyr_3332 0.16 +0.3 3,987,412 - Psyr_3332 0.16 +0.4 3,987,682 - Psyr_3332 0.41 -0.3 3,987,877 + Psyr_3332 0.60 +2.3 3,987,877 + Psyr_3332 0.60 +0.0 3,987,877 + Psyr_3332 0.60 -1.0 3,987,878 - Psyr_3332 0.60 -1.7 3,987,878 - Psyr_3332 0.60 +0.9 3,987,878 - Psyr_3332 0.60 +0.0 3,987,878 - Psyr_3332 0.60 +0.2 3,987,878 - Psyr_3332 0.60 +0.3 3,987,878 - Psyr_3332 0.60 +1.6 3,987,878 - Psyr_3332 0.60 -0.5 3,987,878 - Psyr_3332 0.60 +0.5 3,987,878 - Psyr_3332 0.60 +0.0 3,987,880 + Psyr_3332 0.60 -1.3 3,987,881 - Psyr_3332 0.60 -1.0 3,987,881 - Psyr_3332 0.60 +0.1 3,987,881 - Psyr_3332 0.60 -1.8 3,988,030 + Psyr_3332 0.74 -0.8 3,988,031 - Psyr_3332 0.74 -0.9 3,988,031 - Psyr_3332 0.74 -1.0 3,988,131 - Psyr_3332 0.84 +2.4 3,988,131 - Psyr_3332 0.84 -0.6 3,988,170 + Psyr_3332 0.88 +1.3 3,988,288 - +0.7 3,988,318 + -0.1 3,988,318 + +0.4 3,988,318 + -0.3 3,988,318 + +0.0 3,988,318 + +0.1 3,988,318 + -0.3 3,988,318 + +2.3 3,988,319 - -1.1 3,988,319 - -0.4 3,988,319 - -2.3 3,988,319 - +0.3 3,988,319 - +0.3 3,988,319 - -0.7 3,988,319 - +0.5 3,988,319 - -0.5 3,988,364 + -2.1 3,988,364 + +0.1 3,988,364 + +1.7 3,988,364 + -1.3 3,988,364 + -1.4 3,988,365 - -0.4 3,988,416 + -0.9 3,988,417 - -1.3 3,988,461 + Psyr_3333 0.13 +1.3 3,988,461 + Psyr_3333 0.13 -0.3 3,988,462 - Psyr_3333 0.13 -2.1 3,988,462 - Psyr_3333 0.13 +0.5 3,988,462 - Psyr_3333 0.13 +0.2 3,988,462 - Psyr_3333 0.13 +0.3 3,988,480 + Psyr_3333 0.14 +1.9 3,988,480 + Psyr_3333 0.14 -1.3 3,988,480 + Psyr_3333 0.14 +0.6 3,988,481 - Psyr_3333 0.14 +0.6 3,988,481 - Psyr_3333 0.14 -0.3 3,988,576 - Psyr_3333 0.22 -1.3 3,988,768 + Psyr_3333 0.38 -1.3 3,988,944 + Psyr_3333 0.52 -0.6 3,989,107 - Psyr_3333 0.65 -0.8 3,989,229 - Psyr_3333 0.75 -0.9 3,989,229 - Psyr_3333 0.75 +0.5 3,989,229 - Psyr_3333 0.75 -0.5 3,989,284 + Psyr_3333 0.79 -1.1
Or see this region's nucleotide sequence