Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3331

Experiment: 4-hydroxybutyric (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_3330 and Psyr_3331 are separated by 436 nucleotidesPsyr_3331 and Psyr_3332 overlap by 1 nucleotides Psyr_3330: Psyr_3330 - 4-hydroxyphenylpyruvate dioxygenase, at 3,984,231 to 3,985,307 _3330 Psyr_3331: Psyr_3331 - Glycolate oxidase subunit GlcD, at 3,985,744 to 3,987,243 _3331 Psyr_3332: Psyr_3332 - FAD linked oxidase, N-terminal, at 3,987,243 to 3,988,301 _3332 Position (kb) 3985 3986 3987 3988Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3984.773 kb on - strand, within Psyr_3330at 3984.787 kb on + strand, within Psyr_3330at 3984.896 kb on - strand, within Psyr_3330at 3984.896 kb on - strand, within Psyr_3330at 3984.896 kb on - strand, within Psyr_3330at 3985.102 kb on + strand, within Psyr_3330at 3985.102 kb on + strand, within Psyr_3330at 3985.102 kb on + strand, within Psyr_3330at 3985.102 kb on + strand, within Psyr_3330at 3985.102 kb on + strand, within Psyr_3330at 3985.103 kb on - strand, within Psyr_3330at 3985.115 kb on + strand, within Psyr_3330at 3985.159 kb on + strand, within Psyr_3330at 3985.232 kb on + strandat 3985.233 kb on - strandat 3985.452 kb on - strandat 3985.577 kb on + strandat 3985.577 kb on + strandat 3985.578 kb on - strandat 3985.595 kb on + strandat 3985.595 kb on + strandat 3985.596 kb on - strandat 3985.596 kb on - strandat 3985.639 kb on + strandat 3985.639 kb on + strandat 3985.639 kb on + strandat 3985.639 kb on + strandat 3985.639 kb on + strandat 3985.640 kb on - strandat 3985.640 kb on - strandat 3985.640 kb on - strandat 3985.640 kb on - strandat 3985.643 kb on + strandat 3985.643 kb on + strandat 3985.643 kb on + strandat 3985.703 kb on + strandat 3985.703 kb on + strandat 3985.704 kb on - strandat 3985.704 kb on - strandat 3985.704 kb on - strandat 3985.725 kb on - strandat 3985.874 kb on - strandat 3986.170 kb on + strand, within Psyr_3331at 3986.171 kb on - strand, within Psyr_3331at 3986.171 kb on - strand, within Psyr_3331at 3986.171 kb on - strand, within Psyr_3331at 3986.173 kb on + strand, within Psyr_3331at 3986.258 kb on - strand, within Psyr_3331at 3986.450 kb on + strand, within Psyr_3331at 3986.450 kb on + strand, within Psyr_3331at 3986.451 kb on - strand, within Psyr_3331at 3986.451 kb on - strand, within Psyr_3331at 3986.794 kb on + strand, within Psyr_3331at 3986.794 kb on + strand, within Psyr_3331at 3986.795 kb on - strand, within Psyr_3331at 3986.797 kb on + strand, within Psyr_3331at 3986.797 kb on + strand, within Psyr_3331at 3986.798 kb on - strand, within Psyr_3331at 3986.798 kb on - strand, within Psyr_3331at 3987.320 kb on - strandat 3987.377 kb on - strand, within Psyr_3332at 3987.377 kb on - strand, within Psyr_3332at 3987.411 kb on + strand, within Psyr_3332at 3987.411 kb on + strand, within Psyr_3332at 3987.411 kb on + strand, within Psyr_3332at 3987.411 kb on + strand, within Psyr_3332at 3987.412 kb on - strand, within Psyr_3332at 3987.412 kb on - strand, within Psyr_3332at 3987.412 kb on - strand, within Psyr_3332at 3987.412 kb on - strand, within Psyr_3332at 3987.412 kb on - strand, within Psyr_3332at 3987.412 kb on - strand, within Psyr_3332at 3987.682 kb on - strand, within Psyr_3332at 3987.877 kb on + strand, within Psyr_3332at 3987.877 kb on + strand, within Psyr_3332at 3987.877 kb on + strand, within Psyr_3332at 3987.878 kb on - strand, within Psyr_3332at 3987.878 kb on - strand, within Psyr_3332at 3987.878 kb on - strand, within Psyr_3332at 3987.878 kb on - strand, within Psyr_3332at 3987.878 kb on - strand, within Psyr_3332at 3987.878 kb on - strand, within Psyr_3332at 3987.878 kb on - strand, within Psyr_3332at 3987.878 kb on - strand, within Psyr_3332at 3987.878 kb on - strand, within Psyr_3332at 3987.880 kb on + strand, within Psyr_3332at 3987.881 kb on - strand, within Psyr_3332at 3987.881 kb on - strand, within Psyr_3332at 3987.881 kb on - strand, within Psyr_3332at 3988.030 kb on + strand, within Psyr_3332at 3988.031 kb on - strand, within Psyr_3332at 3988.031 kb on - strand, within Psyr_3332at 3988.131 kb on - strand, within Psyr_3332at 3988.131 kb on - strand, within Psyr_3332at 3988.170 kb on + strand, within Psyr_3332

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C)
remove
3,984,773 - Psyr_3330 0.50 +0.7
3,984,787 + Psyr_3330 0.52 +1.4
3,984,896 - Psyr_3330 0.62 +2.3
3,984,896 - Psyr_3330 0.62 -0.3
3,984,896 - Psyr_3330 0.62 -1.3
3,985,102 + Psyr_3330 0.81 -1.4
3,985,102 + Psyr_3330 0.81 +0.7
3,985,102 + Psyr_3330 0.81 +0.2
3,985,102 + Psyr_3330 0.81 +2.7
3,985,102 + Psyr_3330 0.81 -0.8
3,985,103 - Psyr_3330 0.81 -1.3
3,985,115 + Psyr_3330 0.82 -0.1
3,985,159 + Psyr_3330 0.86 -1.8
3,985,232 + -1.3
3,985,233 - -1.1
3,985,452 - -0.3
3,985,577 + -0.0
3,985,577 + -0.3
3,985,578 - -0.1
3,985,595 + -0.0
3,985,595 + -2.0
3,985,596 - +0.1
3,985,596 - +1.9
3,985,639 + -2.8
3,985,639 + +2.3
3,985,639 + -0.6
3,985,639 + -2.8
3,985,639 + -0.3
3,985,640 - -1.8
3,985,640 - +0.6
3,985,640 - -0.1
3,985,640 - -2.3
3,985,643 + -1.3
3,985,643 + +1.3
3,985,643 + -2.3
3,985,703 + -1.4
3,985,703 + +0.9
3,985,704 - -0.3
3,985,704 - +0.3
3,985,704 - -0.8
3,985,725 - -1.2
3,985,874 - -1.0
3,986,170 + Psyr_3331 0.28 +0.4
3,986,171 - Psyr_3331 0.28 +0.0
3,986,171 - Psyr_3331 0.28 -0.3
3,986,171 - Psyr_3331 0.28 -1.3
3,986,173 + Psyr_3331 0.29 -1.6
3,986,258 - Psyr_3331 0.34 +2.9
3,986,450 + Psyr_3331 0.47 -1.9
3,986,450 + Psyr_3331 0.47 -0.7
3,986,451 - Psyr_3331 0.47 -0.4
3,986,451 - Psyr_3331 0.47 +1.1
3,986,794 + Psyr_3331 0.70 -1.7
3,986,794 + Psyr_3331 0.70 +0.1
3,986,795 - Psyr_3331 0.70 +0.3
3,986,797 + Psyr_3331 0.70 -1.8
3,986,797 + Psyr_3331 0.70 -0.5
3,986,798 - Psyr_3331 0.70 -1.8
3,986,798 - Psyr_3331 0.70 +0.3
3,987,320 - +2.3
3,987,377 - Psyr_3332 0.13 +2.7
3,987,377 - Psyr_3332 0.13 -1.3
3,987,411 + Psyr_3332 0.16 -0.7
3,987,411 + Psyr_3332 0.16 +1.5
3,987,411 + Psyr_3332 0.16 +0.2
3,987,411 + Psyr_3332 0.16 -2.1
3,987,412 - Psyr_3332 0.16 +0.7
3,987,412 - Psyr_3332 0.16 +1.0
3,987,412 - Psyr_3332 0.16 -0.7
3,987,412 - Psyr_3332 0.16 +0.7
3,987,412 - Psyr_3332 0.16 +0.3
3,987,412 - Psyr_3332 0.16 +0.4
3,987,682 - Psyr_3332 0.41 -0.3
3,987,877 + Psyr_3332 0.60 +2.3
3,987,877 + Psyr_3332 0.60 +0.0
3,987,877 + Psyr_3332 0.60 -1.0
3,987,878 - Psyr_3332 0.60 -1.7
3,987,878 - Psyr_3332 0.60 +0.9
3,987,878 - Psyr_3332 0.60 +0.0
3,987,878 - Psyr_3332 0.60 +0.2
3,987,878 - Psyr_3332 0.60 +0.3
3,987,878 - Psyr_3332 0.60 +1.6
3,987,878 - Psyr_3332 0.60 -0.5
3,987,878 - Psyr_3332 0.60 +0.5
3,987,878 - Psyr_3332 0.60 +0.0
3,987,880 + Psyr_3332 0.60 -1.3
3,987,881 - Psyr_3332 0.60 -1.0
3,987,881 - Psyr_3332 0.60 +0.1
3,987,881 - Psyr_3332 0.60 -1.8
3,988,030 + Psyr_3332 0.74 -0.8
3,988,031 - Psyr_3332 0.74 -0.9
3,988,031 - Psyr_3332 0.74 -1.0
3,988,131 - Psyr_3332 0.84 +2.4
3,988,131 - Psyr_3332 0.84 -0.6
3,988,170 + Psyr_3332 0.88 +1.3

Or see this region's nucleotide sequence