Experiment: 4-hydroxybutyric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3289 and Psyr_3290 are separated by 4 nucleotides Psyr_3290 and Psyr_3291 are separated by 301 nucleotides Psyr_3291 and Psyr_3292 are separated by 98 nucleotides
Psyr_3289: Psyr_3289 - 3-ketoacyl-CoA thiolase, at 3,935,596 to 3,936,771
_3289
Psyr_3290: Psyr_3290 - 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase, at 3,936,776 to 3,938,941
_3290
Psyr_3291: Psyr_3291 - hypothetical protein, at 3,939,243 to 3,939,536
_3291
Psyr_3292: Psyr_3292 - conserved hypothetical protein, at 3,939,635 to 3,940,072
_3292
Position (kb)
3936
3937
3938
3939 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3935.865 kb on + strand, within Psyr_3289 at 3935.866 kb on - strand, within Psyr_3289 at 3936.061 kb on + strand, within Psyr_3289 at 3936.061 kb on + strand, within Psyr_3289 at 3936.061 kb on + strand, within Psyr_3289 at 3936.672 kb on + strand at 3936.672 kb on + strand at 3936.672 kb on + strand at 3936.672 kb on + strand at 3936.672 kb on + strand at 3936.672 kb on + strand at 3936.673 kb on - strand at 3936.673 kb on - strand at 3936.673 kb on - strand at 3936.673 kb on - strand at 3936.762 kb on + strand at 3936.852 kb on + strand at 3936.852 kb on + strand at 3936.853 kb on - strand at 3936.964 kb on - strand at 3936.964 kb on - strand at 3936.964 kb on - strand at 3936.964 kb on - strand at 3937.093 kb on - strand, within Psyr_3290 at 3937.173 kb on + strand, within Psyr_3290 at 3937.174 kb on - strand, within Psyr_3290 at 3937.423 kb on - strand, within Psyr_3290 at 3937.789 kb on + strand, within Psyr_3290 at 3937.790 kb on - strand, within Psyr_3290 at 3937.931 kb on - strand, within Psyr_3290 at 3938.196 kb on + strand, within Psyr_3290 at 3938.926 kb on + strand at 3938.926 kb on + strand at 3938.927 kb on - strand at 3938.934 kb on + strand at 3938.934 kb on + strand at 3938.934 kb on + strand at 3938.935 kb on - strand at 3938.935 kb on - strand at 3939.060 kb on - strand at 3939.060 kb on - strand at 3939.106 kb on + strand at 3939.190 kb on + strand at 3939.190 kb on + strand at 3939.304 kb on + strand, within Psyr_3291 at 3939.304 kb on + strand, within Psyr_3291 at 3939.304 kb on + strand, within Psyr_3291 at 3939.304 kb on + strand, within Psyr_3291 at 3939.305 kb on - strand, within Psyr_3291 at 3939.305 kb on - strand, within Psyr_3291 at 3939.307 kb on + strand, within Psyr_3291 at 3939.307 kb on + strand, within Psyr_3291 at 3939.320 kb on - strand, within Psyr_3291 at 3939.374 kb on + strand, within Psyr_3291 at 3939.462 kb on + strand, within Psyr_3291 at 3939.462 kb on + strand, within Psyr_3291 at 3939.703 kb on - strand, within Psyr_3292 at 3939.738 kb on + strand, within Psyr_3292 at 3939.738 kb on + strand, within Psyr_3292 at 3939.765 kb on + strand, within Psyr_3292 at 3939.880 kb on - strand, within Psyr_3292
Per-strain Table
Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C) remove 3,935,865 + Psyr_3289 0.23 +1.1 3,935,866 - Psyr_3289 0.23 -0.2 3,936,061 + Psyr_3289 0.40 -0.7 3,936,061 + Psyr_3289 0.40 +0.2 3,936,061 + Psyr_3289 0.40 -2.6 3,936,672 + -0.7 3,936,672 + +0.2 3,936,672 + -3.3 3,936,672 + -2.2 3,936,672 + -2.6 3,936,672 + -1.7 3,936,673 - +1.3 3,936,673 - -3.6 3,936,673 - +0.8 3,936,673 - -1.4 3,936,762 + +0.0 3,936,852 + -2.6 3,936,852 + -0.8 3,936,853 - -2.3 3,936,964 - -0.2 3,936,964 - -0.9 3,936,964 - -2.2 3,936,964 - -1.2 3,937,093 - Psyr_3290 0.15 -1.5 3,937,173 + Psyr_3290 0.18 +1.3 3,937,174 - Psyr_3290 0.18 -1.6 3,937,423 - Psyr_3290 0.30 -1.2 3,937,789 + Psyr_3290 0.47 -1.2 3,937,790 - Psyr_3290 0.47 -3.4 3,937,931 - Psyr_3290 0.53 -3.2 3,938,196 + Psyr_3290 0.66 -0.8 3,938,926 + -3.0 3,938,926 + -1.7 3,938,927 - -1.8 3,938,934 + -2.0 3,938,934 + -0.2 3,938,934 + -2.8 3,938,935 - -2.9 3,938,935 - -3.0 3,939,060 - -0.7 3,939,060 - -0.2 3,939,106 + -1.8 3,939,190 + -0.7 3,939,190 + +0.8 3,939,304 + Psyr_3291 0.21 -1.8 3,939,304 + Psyr_3291 0.21 +0.6 3,939,304 + Psyr_3291 0.21 -0.3 3,939,304 + Psyr_3291 0.21 +2.6 3,939,305 - Psyr_3291 0.21 +0.3 3,939,305 - Psyr_3291 0.21 +2.3 3,939,307 + Psyr_3291 0.22 +0.2 3,939,307 + Psyr_3291 0.22 -3.0 3,939,320 - Psyr_3291 0.26 +2.0 3,939,374 + Psyr_3291 0.45 -0.8 3,939,462 + Psyr_3291 0.74 +0.6 3,939,462 + Psyr_3291 0.74 +1.7 3,939,703 - Psyr_3292 0.16 -1.2 3,939,738 + Psyr_3292 0.24 -0.2 3,939,738 + Psyr_3292 0.24 -0.2 3,939,765 + Psyr_3292 0.30 +2.3 3,939,880 - Psyr_3292 0.56 -1.2
Or see this region's nucleotide sequence