Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3290

Experiment: 4-hydroxybutyric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3289 and Psyr_3290 are separated by 4 nucleotidesPsyr_3290 and Psyr_3291 are separated by 301 nucleotidesPsyr_3291 and Psyr_3292 are separated by 98 nucleotides Psyr_3289: Psyr_3289 - 3-ketoacyl-CoA thiolase, at 3,935,596 to 3,936,771 _3289 Psyr_3290: Psyr_3290 - 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase, at 3,936,776 to 3,938,941 _3290 Psyr_3291: Psyr_3291 - hypothetical protein, at 3,939,243 to 3,939,536 _3291 Psyr_3292: Psyr_3292 - conserved hypothetical protein, at 3,939,635 to 3,940,072 _3292 Position (kb) 3936 3937 3938 3939Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3935.865 kb on + strand, within Psyr_3289at 3935.866 kb on - strand, within Psyr_3289at 3936.061 kb on + strand, within Psyr_3289at 3936.061 kb on + strand, within Psyr_3289at 3936.061 kb on + strand, within Psyr_3289at 3936.672 kb on + strandat 3936.672 kb on + strandat 3936.672 kb on + strandat 3936.672 kb on + strandat 3936.672 kb on + strandat 3936.672 kb on + strandat 3936.673 kb on - strandat 3936.673 kb on - strandat 3936.673 kb on - strandat 3936.673 kb on - strandat 3936.762 kb on + strandat 3936.852 kb on + strandat 3936.852 kb on + strandat 3936.853 kb on - strandat 3936.964 kb on - strandat 3936.964 kb on - strandat 3936.964 kb on - strandat 3936.964 kb on - strandat 3937.093 kb on - strand, within Psyr_3290at 3937.173 kb on + strand, within Psyr_3290at 3937.174 kb on - strand, within Psyr_3290at 3937.423 kb on - strand, within Psyr_3290at 3937.789 kb on + strand, within Psyr_3290at 3937.790 kb on - strand, within Psyr_3290at 3937.931 kb on - strand, within Psyr_3290at 3938.196 kb on + strand, within Psyr_3290at 3938.926 kb on + strandat 3938.926 kb on + strandat 3938.927 kb on - strandat 3938.934 kb on + strandat 3938.934 kb on + strandat 3938.934 kb on + strandat 3938.935 kb on - strandat 3938.935 kb on - strandat 3939.060 kb on - strandat 3939.060 kb on - strandat 3939.106 kb on + strandat 3939.190 kb on + strandat 3939.190 kb on + strandat 3939.304 kb on + strand, within Psyr_3291at 3939.304 kb on + strand, within Psyr_3291at 3939.304 kb on + strand, within Psyr_3291at 3939.304 kb on + strand, within Psyr_3291at 3939.305 kb on - strand, within Psyr_3291at 3939.305 kb on - strand, within Psyr_3291at 3939.307 kb on + strand, within Psyr_3291at 3939.307 kb on + strand, within Psyr_3291at 3939.320 kb on - strand, within Psyr_3291at 3939.374 kb on + strand, within Psyr_3291at 3939.462 kb on + strand, within Psyr_3291at 3939.462 kb on + strand, within Psyr_3291at 3939.703 kb on - strand, within Psyr_3292at 3939.738 kb on + strand, within Psyr_3292at 3939.738 kb on + strand, within Psyr_3292at 3939.765 kb on + strand, within Psyr_3292at 3939.880 kb on - strand, within Psyr_3292

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C)
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3,935,865 + Psyr_3289 0.23 +1.1
3,935,866 - Psyr_3289 0.23 -0.2
3,936,061 + Psyr_3289 0.40 -0.7
3,936,061 + Psyr_3289 0.40 +0.2
3,936,061 + Psyr_3289 0.40 -2.6
3,936,672 + -0.7
3,936,672 + +0.2
3,936,672 + -3.3
3,936,672 + -2.2
3,936,672 + -2.6
3,936,672 + -1.7
3,936,673 - +1.3
3,936,673 - -3.6
3,936,673 - +0.8
3,936,673 - -1.4
3,936,762 + +0.0
3,936,852 + -2.6
3,936,852 + -0.8
3,936,853 - -2.3
3,936,964 - -0.2
3,936,964 - -0.9
3,936,964 - -2.2
3,936,964 - -1.2
3,937,093 - Psyr_3290 0.15 -1.5
3,937,173 + Psyr_3290 0.18 +1.3
3,937,174 - Psyr_3290 0.18 -1.6
3,937,423 - Psyr_3290 0.30 -1.2
3,937,789 + Psyr_3290 0.47 -1.2
3,937,790 - Psyr_3290 0.47 -3.4
3,937,931 - Psyr_3290 0.53 -3.2
3,938,196 + Psyr_3290 0.66 -0.8
3,938,926 + -3.0
3,938,926 + -1.7
3,938,927 - -1.8
3,938,934 + -2.0
3,938,934 + -0.2
3,938,934 + -2.8
3,938,935 - -2.9
3,938,935 - -3.0
3,939,060 - -0.7
3,939,060 - -0.2
3,939,106 + -1.8
3,939,190 + -0.7
3,939,190 + +0.8
3,939,304 + Psyr_3291 0.21 -1.8
3,939,304 + Psyr_3291 0.21 +0.6
3,939,304 + Psyr_3291 0.21 -0.3
3,939,304 + Psyr_3291 0.21 +2.6
3,939,305 - Psyr_3291 0.21 +0.3
3,939,305 - Psyr_3291 0.21 +2.3
3,939,307 + Psyr_3291 0.22 +0.2
3,939,307 + Psyr_3291 0.22 -3.0
3,939,320 - Psyr_3291 0.26 +2.0
3,939,374 + Psyr_3291 0.45 -0.8
3,939,462 + Psyr_3291 0.74 +0.6
3,939,462 + Psyr_3291 0.74 +1.7
3,939,703 - Psyr_3292 0.16 -1.2
3,939,738 + Psyr_3292 0.24 -0.2
3,939,738 + Psyr_3292 0.24 -0.2
3,939,765 + Psyr_3292 0.30 +2.3
3,939,880 - Psyr_3292 0.56 -1.2

Or see this region's nucleotide sequence