Experiment: 4-hydroxybutyric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3287 and Psyr_3288 are separated by 113 nucleotides Psyr_3288 and Psyr_3289 are separated by 102 nucleotides Psyr_3289 and Psyr_3290 are separated by 4 nucleotides
Psyr_3287: Psyr_3287 - DNA topoisomerase I, at 3,932,531 to 3,935,143
_3287
Psyr_3288: Psyr_3288 - conserved hypothetical protein, at 3,935,257 to 3,935,493
_3288
Psyr_3289: Psyr_3289 - 3-ketoacyl-CoA thiolase, at 3,935,596 to 3,936,771
_3289
Psyr_3290: Psyr_3290 - 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase, at 3,936,776 to 3,938,941
_3290
Position (kb)
3935
3936
3937 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3935.167 kb on - strand at 3935.192 kb on - strand at 3935.204 kb on - strand at 3935.204 kb on - strand at 3935.204 kb on - strand at 3935.204 kb on - strand at 3935.204 kb on - strand at 3935.204 kb on - strand at 3935.204 kb on - strand at 3935.206 kb on - strand at 3935.206 kb on - strand at 3935.206 kb on - strand at 3935.206 kb on - strand at 3935.206 kb on - strand at 3935.206 kb on - strand at 3935.206 kb on - strand at 3935.206 kb on - strand at 3935.206 kb on - strand at 3935.206 kb on - strand at 3935.206 kb on - strand at 3935.206 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.208 kb on - strand at 3935.210 kb on - strand at 3935.210 kb on - strand at 3935.210 kb on - strand at 3935.210 kb on - strand at 3935.447 kb on + strand, within Psyr_3288 at 3935.462 kb on + strand, within Psyr_3288 at 3935.462 kb on + strand, within Psyr_3288 at 3935.462 kb on + strand, within Psyr_3288 at 3935.463 kb on - strand, within Psyr_3288 at 3935.471 kb on + strand at 3935.509 kb on + strand at 3935.509 kb on + strand at 3935.510 kb on - strand at 3935.510 kb on - strand at 3935.640 kb on + strand at 3935.640 kb on + strand at 3935.640 kb on + strand at 3935.640 kb on + strand at 3935.640 kb on + strand at 3935.865 kb on + strand, within Psyr_3289 at 3935.866 kb on - strand, within Psyr_3289 at 3936.061 kb on + strand, within Psyr_3289 at 3936.061 kb on + strand, within Psyr_3289 at 3936.061 kb on + strand, within Psyr_3289 at 3936.672 kb on + strand at 3936.672 kb on + strand at 3936.672 kb on + strand at 3936.672 kb on + strand at 3936.672 kb on + strand at 3936.672 kb on + strand at 3936.673 kb on - strand at 3936.673 kb on - strand at 3936.673 kb on - strand at 3936.673 kb on - strand at 3936.762 kb on + strand at 3936.852 kb on + strand at 3936.852 kb on + strand at 3936.853 kb on - strand at 3936.964 kb on - strand at 3936.964 kb on - strand at 3936.964 kb on - strand at 3936.964 kb on - strand at 3937.093 kb on - strand, within Psyr_3290 at 3937.173 kb on + strand, within Psyr_3290 at 3937.174 kb on - strand, within Psyr_3290 at 3937.423 kb on - strand, within Psyr_3290
Per-strain Table
Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C) remove 3,935,167 - -0.2 3,935,192 - -0.4 3,935,204 - -0.2 3,935,204 - -1.8 3,935,204 - +2.8 3,935,204 - -0.2 3,935,204 - -1.2 3,935,204 - +1.4 3,935,204 - -1.8 3,935,206 - +0.4 3,935,206 - +1.2 3,935,206 - -0.4 3,935,206 - +2.9 3,935,206 - +0.3 3,935,206 - -1.5 3,935,206 - +0.3 3,935,206 - +0.6 3,935,206 - -0.2 3,935,206 - -0.5 3,935,206 - -1.6 3,935,206 - +0.0 3,935,208 - -0.2 3,935,208 - +1.4 3,935,208 - +1.4 3,935,208 - -2.0 3,935,208 - -0.0 3,935,208 - -0.2 3,935,208 - +1.5 3,935,208 - -1.8 3,935,208 - +0.4 3,935,208 - -1.2 3,935,208 - +1.6 3,935,208 - +2.1 3,935,208 - -0.0 3,935,208 - +2.7 3,935,208 - -0.8 3,935,208 - +2.4 3,935,208 - +0.9 3,935,208 - +0.8 3,935,208 - -0.6 3,935,208 - -0.1 3,935,210 - -0.0 3,935,210 - +0.4 3,935,210 - -0.7 3,935,210 - -0.8 3,935,447 + Psyr_3288 0.80 -0.6 3,935,462 + Psyr_3288 0.86 +0.3 3,935,462 + Psyr_3288 0.86 -0.7 3,935,462 + Psyr_3288 0.86 -0.5 3,935,463 - Psyr_3288 0.87 -0.2 3,935,471 + -2.2 3,935,509 + -0.5 3,935,509 + +0.1 3,935,510 - +0.6 3,935,510 - -0.6 3,935,640 + -1.7 3,935,640 + -1.0 3,935,640 + +0.6 3,935,640 + -1.0 3,935,640 + -0.9 3,935,865 + Psyr_3289 0.23 +1.1 3,935,866 - Psyr_3289 0.23 -0.2 3,936,061 + Psyr_3289 0.40 -0.7 3,936,061 + Psyr_3289 0.40 +0.2 3,936,061 + Psyr_3289 0.40 -2.6 3,936,672 + -0.7 3,936,672 + +0.2 3,936,672 + -3.3 3,936,672 + -2.2 3,936,672 + -2.6 3,936,672 + -1.7 3,936,673 - +1.3 3,936,673 - -3.6 3,936,673 - +0.8 3,936,673 - -1.4 3,936,762 + +0.0 3,936,852 + -2.6 3,936,852 + -0.8 3,936,853 - -2.3 3,936,964 - -0.2 3,936,964 - -0.9 3,936,964 - -2.2 3,936,964 - -1.2 3,937,093 - Psyr_3290 0.15 -1.5 3,937,173 + Psyr_3290 0.18 +1.3 3,937,174 - Psyr_3290 0.18 -1.6 3,937,423 - Psyr_3290 0.30 -1.2
Or see this region's nucleotide sequence