Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3289

Experiment: 4-hydroxybutyric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3287 and Psyr_3288 are separated by 113 nucleotidesPsyr_3288 and Psyr_3289 are separated by 102 nucleotidesPsyr_3289 and Psyr_3290 are separated by 4 nucleotides Psyr_3287: Psyr_3287 - DNA topoisomerase I, at 3,932,531 to 3,935,143 _3287 Psyr_3288: Psyr_3288 - conserved hypothetical protein, at 3,935,257 to 3,935,493 _3288 Psyr_3289: Psyr_3289 - 3-ketoacyl-CoA thiolase, at 3,935,596 to 3,936,771 _3289 Psyr_3290: Psyr_3290 - 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase, at 3,936,776 to 3,938,941 _3290 Position (kb) 3935 3936 3937Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3935.167 kb on - strandat 3935.192 kb on - strandat 3935.204 kb on - strandat 3935.204 kb on - strandat 3935.204 kb on - strandat 3935.204 kb on - strandat 3935.204 kb on - strandat 3935.204 kb on - strandat 3935.204 kb on - strandat 3935.206 kb on - strandat 3935.206 kb on - strandat 3935.206 kb on - strandat 3935.206 kb on - strandat 3935.206 kb on - strandat 3935.206 kb on - strandat 3935.206 kb on - strandat 3935.206 kb on - strandat 3935.206 kb on - strandat 3935.206 kb on - strandat 3935.206 kb on - strandat 3935.206 kb on - strandat 3935.208 kb on - strandat 3935.208 kb on - strandat 3935.208 kb on - strandat 3935.208 kb on - strandat 3935.208 kb on - strandat 3935.208 kb on - strandat 3935.208 kb on - strandat 3935.208 kb on - strandat 3935.208 kb on - strandat 3935.208 kb on - strandat 3935.208 kb on - strandat 3935.208 kb on - strandat 3935.208 kb on - strandat 3935.208 kb on - strandat 3935.208 kb on - strandat 3935.208 kb on - strandat 3935.208 kb on - strandat 3935.208 kb on - strandat 3935.208 kb on - strandat 3935.208 kb on - strandat 3935.210 kb on - strandat 3935.210 kb on - strandat 3935.210 kb on - strandat 3935.210 kb on - strandat 3935.447 kb on + strand, within Psyr_3288at 3935.462 kb on + strand, within Psyr_3288at 3935.462 kb on + strand, within Psyr_3288at 3935.462 kb on + strand, within Psyr_3288at 3935.463 kb on - strand, within Psyr_3288at 3935.471 kb on + strandat 3935.509 kb on + strandat 3935.509 kb on + strandat 3935.510 kb on - strandat 3935.510 kb on - strandat 3935.640 kb on + strandat 3935.640 kb on + strandat 3935.640 kb on + strandat 3935.640 kb on + strandat 3935.640 kb on + strandat 3935.865 kb on + strand, within Psyr_3289at 3935.866 kb on - strand, within Psyr_3289at 3936.061 kb on + strand, within Psyr_3289at 3936.061 kb on + strand, within Psyr_3289at 3936.061 kb on + strand, within Psyr_3289at 3936.672 kb on + strandat 3936.672 kb on + strandat 3936.672 kb on + strandat 3936.672 kb on + strandat 3936.672 kb on + strandat 3936.672 kb on + strandat 3936.673 kb on - strandat 3936.673 kb on - strandat 3936.673 kb on - strandat 3936.673 kb on - strandat 3936.762 kb on + strandat 3936.852 kb on + strandat 3936.852 kb on + strandat 3936.853 kb on - strandat 3936.964 kb on - strandat 3936.964 kb on - strandat 3936.964 kb on - strandat 3936.964 kb on - strandat 3937.093 kb on - strand, within Psyr_3290at 3937.173 kb on + strand, within Psyr_3290at 3937.174 kb on - strand, within Psyr_3290at 3937.423 kb on - strand, within Psyr_3290

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C)
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3,935,167 - -0.2
3,935,192 - -0.4
3,935,204 - -0.2
3,935,204 - -1.8
3,935,204 - +2.8
3,935,204 - -0.2
3,935,204 - -1.2
3,935,204 - +1.4
3,935,204 - -1.8
3,935,206 - +0.4
3,935,206 - +1.2
3,935,206 - -0.4
3,935,206 - +2.9
3,935,206 - +0.3
3,935,206 - -1.5
3,935,206 - +0.3
3,935,206 - +0.6
3,935,206 - -0.2
3,935,206 - -0.5
3,935,206 - -1.6
3,935,206 - +0.0
3,935,208 - -0.2
3,935,208 - +1.4
3,935,208 - +1.4
3,935,208 - -2.0
3,935,208 - -0.0
3,935,208 - -0.2
3,935,208 - +1.5
3,935,208 - -1.8
3,935,208 - +0.4
3,935,208 - -1.2
3,935,208 - +1.6
3,935,208 - +2.1
3,935,208 - -0.0
3,935,208 - +2.7
3,935,208 - -0.8
3,935,208 - +2.4
3,935,208 - +0.9
3,935,208 - +0.8
3,935,208 - -0.6
3,935,208 - -0.1
3,935,210 - -0.0
3,935,210 - +0.4
3,935,210 - -0.7
3,935,210 - -0.8
3,935,447 + Psyr_3288 0.80 -0.6
3,935,462 + Psyr_3288 0.86 +0.3
3,935,462 + Psyr_3288 0.86 -0.7
3,935,462 + Psyr_3288 0.86 -0.5
3,935,463 - Psyr_3288 0.87 -0.2
3,935,471 + -2.2
3,935,509 + -0.5
3,935,509 + +0.1
3,935,510 - +0.6
3,935,510 - -0.6
3,935,640 + -1.7
3,935,640 + -1.0
3,935,640 + +0.6
3,935,640 + -1.0
3,935,640 + -0.9
3,935,865 + Psyr_3289 0.23 +1.1
3,935,866 - Psyr_3289 0.23 -0.2
3,936,061 + Psyr_3289 0.40 -0.7
3,936,061 + Psyr_3289 0.40 +0.2
3,936,061 + Psyr_3289 0.40 -2.6
3,936,672 + -0.7
3,936,672 + +0.2
3,936,672 + -3.3
3,936,672 + -2.2
3,936,672 + -2.6
3,936,672 + -1.7
3,936,673 - +1.3
3,936,673 - -3.6
3,936,673 - +0.8
3,936,673 - -1.4
3,936,762 + +0.0
3,936,852 + -2.6
3,936,852 + -0.8
3,936,853 - -2.3
3,936,964 - -0.2
3,936,964 - -0.9
3,936,964 - -2.2
3,936,964 - -1.2
3,937,093 - Psyr_3290 0.15 -1.5
3,937,173 + Psyr_3290 0.18 +1.3
3,937,174 - Psyr_3290 0.18 -1.6
3,937,423 - Psyr_3290 0.30 -1.2

Or see this region's nucleotide sequence