Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3031

Experiment: 4-hydroxybutyric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3029 and Psyr_3030 overlap by 61 nucleotidesPsyr_3030 and Psyr_3031 are separated by 90 nucleotidesPsyr_3031 and Psyr_3032 are separated by 190 nucleotidesPsyr_3032 and Psyr_3033 are separated by 129 nucleotides Psyr_3029: Psyr_3029 - Rhs element Vgr protein, at 3,627,052 to 3,628,674 _3029 Psyr_3030: Psyr_3030 - short chain enoyl-CoA hydratase, at 3,628,614 to 3,629,387 _3030 Psyr_3031: Psyr_3031 - Thiolase, at 3,629,478 to 3,630,686 _3031 Psyr_3032: Psyr_3032 - lipoprotein, putative, at 3,630,877 to 3,631,356 _3032 Psyr_3033: Psyr_3033 - conserved domain protein, at 3,631,486 to 3,632,364 _3033 Position (kb) 3629 3630 3631Strain fitness (log2 ratio) -2 -1 0 1 2at 3629.351 kb on + strandat 3629.351 kb on + strandat 3629.351 kb on + strandat 3629.352 kb on - strandat 3629.352 kb on - strandat 3629.352 kb on - strandat 3629.433 kb on + strandat 3629.499 kb on + strandat 3629.915 kb on + strand, within Psyr_3031at 3629.915 kb on + strand, within Psyr_3031at 3629.915 kb on + strand, within Psyr_3031at 3629.915 kb on + strand, within Psyr_3031at 3629.916 kb on - strand, within Psyr_3031at 3630.205 kb on + strand, within Psyr_3031at 3630.205 kb on + strand, within Psyr_3031at 3630.206 kb on - strand, within Psyr_3031at 3630.206 kb on - strand, within Psyr_3031at 3630.206 kb on - strand, within Psyr_3031at 3630.690 kb on + strandat 3630.691 kb on - strandat 3630.787 kb on - strandat 3631.069 kb on + strand, within Psyr_3032at 3631.069 kb on + strand, within Psyr_3032at 3631.070 kb on - strand, within Psyr_3032at 3631.145 kb on + strand, within Psyr_3032at 3631.145 kb on + strand, within Psyr_3032at 3631.146 kb on - strand, within Psyr_3032at 3631.146 kb on - strand, within Psyr_3032at 3631.146 kb on - strand, within Psyr_3032at 3631.146 kb on - strand, within Psyr_3032at 3631.224 kb on + strand, within Psyr_3032at 3631.255 kb on + strand, within Psyr_3032at 3631.256 kb on - strand, within Psyr_3032at 3631.258 kb on - strand, within Psyr_3032at 3631.355 kb on - strandat 3631.374 kb on + strandat 3631.643 kb on + strand, within Psyr_3033at 3631.644 kb on - strand, within Psyr_3033at 3631.644 kb on - strand, within Psyr_3033at 3631.666 kb on + strand, within Psyr_3033at 3631.666 kb on + strand, within Psyr_3033at 3631.667 kb on - strand, within Psyr_3033

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C)
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3,629,351 + +1.0
3,629,351 + +1.6
3,629,351 + -0.2
3,629,352 - -0.4
3,629,352 - -0.8
3,629,352 - +0.9
3,629,433 + +1.0
3,629,499 + -1.6
3,629,915 + Psyr_3031 0.36 -0.2
3,629,915 + Psyr_3031 0.36 +1.5
3,629,915 + Psyr_3031 0.36 -0.8
3,629,915 + Psyr_3031 0.36 -1.4
3,629,916 - Psyr_3031 0.36 +0.6
3,630,205 + Psyr_3031 0.60 -0.4
3,630,205 + Psyr_3031 0.60 +0.6
3,630,206 - Psyr_3031 0.60 +0.8
3,630,206 - Psyr_3031 0.60 +0.6
3,630,206 - Psyr_3031 0.60 -0.8
3,630,690 + -0.7
3,630,691 - +0.2
3,630,787 - +1.2
3,631,069 + Psyr_3032 0.40 +0.1
3,631,069 + Psyr_3032 0.40 -2.3
3,631,070 - Psyr_3032 0.40 +2.3
3,631,145 + Psyr_3032 0.56 +1.5
3,631,145 + Psyr_3032 0.56 -0.4
3,631,146 - Psyr_3032 0.56 +1.6
3,631,146 - Psyr_3032 0.56 +0.5
3,631,146 - Psyr_3032 0.56 +0.9
3,631,146 - Psyr_3032 0.56 +1.1
3,631,224 + Psyr_3032 0.72 -0.1
3,631,255 + Psyr_3032 0.79 +0.6
3,631,256 - Psyr_3032 0.79 -1.7
3,631,258 - Psyr_3032 0.79 +0.0
3,631,355 - -0.2
3,631,374 + +0.4
3,631,643 + Psyr_3033 0.18 -1.6
3,631,644 - Psyr_3033 0.18 +1.2
3,631,644 - Psyr_3033 0.18 -0.4
3,631,666 + Psyr_3033 0.20 +0.1
3,631,666 + Psyr_3033 0.20 -1.9
3,631,667 - Psyr_3033 0.21 -0.6

Or see this region's nucleotide sequence