Experiment: 4-hydroxybutyric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3029 and Psyr_3030 overlap by 61 nucleotides Psyr_3030 and Psyr_3031 are separated by 90 nucleotides Psyr_3031 and Psyr_3032 are separated by 190 nucleotides Psyr_3032 and Psyr_3033 are separated by 129 nucleotides
Psyr_3029: Psyr_3029 - Rhs element Vgr protein, at 3,627,052 to 3,628,674
_3029
Psyr_3030: Psyr_3030 - short chain enoyl-CoA hydratase, at 3,628,614 to 3,629,387
_3030
Psyr_3031: Psyr_3031 - Thiolase, at 3,629,478 to 3,630,686
_3031
Psyr_3032: Psyr_3032 - lipoprotein, putative, at 3,630,877 to 3,631,356
_3032
Psyr_3033: Psyr_3033 - conserved domain protein, at 3,631,486 to 3,632,364
_3033
Position (kb)
3629
3630
3631 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3629.351 kb on + strand at 3629.351 kb on + strand at 3629.351 kb on + strand at 3629.352 kb on - strand at 3629.352 kb on - strand at 3629.352 kb on - strand at 3629.433 kb on + strand at 3629.499 kb on + strand at 3629.915 kb on + strand, within Psyr_3031 at 3629.915 kb on + strand, within Psyr_3031 at 3629.915 kb on + strand, within Psyr_3031 at 3629.915 kb on + strand, within Psyr_3031 at 3629.916 kb on - strand, within Psyr_3031 at 3630.205 kb on + strand, within Psyr_3031 at 3630.205 kb on + strand, within Psyr_3031 at 3630.206 kb on - strand, within Psyr_3031 at 3630.206 kb on - strand, within Psyr_3031 at 3630.206 kb on - strand, within Psyr_3031 at 3630.690 kb on + strand at 3630.691 kb on - strand at 3630.787 kb on - strand at 3631.069 kb on + strand, within Psyr_3032 at 3631.069 kb on + strand, within Psyr_3032 at 3631.070 kb on - strand, within Psyr_3032 at 3631.145 kb on + strand, within Psyr_3032 at 3631.145 kb on + strand, within Psyr_3032 at 3631.146 kb on - strand, within Psyr_3032 at 3631.146 kb on - strand, within Psyr_3032 at 3631.146 kb on - strand, within Psyr_3032 at 3631.146 kb on - strand, within Psyr_3032 at 3631.224 kb on + strand, within Psyr_3032 at 3631.255 kb on + strand, within Psyr_3032 at 3631.256 kb on - strand, within Psyr_3032 at 3631.258 kb on - strand, within Psyr_3032 at 3631.355 kb on - strand at 3631.374 kb on + strand at 3631.643 kb on + strand, within Psyr_3033 at 3631.644 kb on - strand, within Psyr_3033 at 3631.644 kb on - strand, within Psyr_3033 at 3631.666 kb on + strand, within Psyr_3033 at 3631.666 kb on + strand, within Psyr_3033 at 3631.667 kb on - strand, within Psyr_3033
Per-strain Table
Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C) remove 3,629,351 + +1.0 3,629,351 + +1.6 3,629,351 + -0.2 3,629,352 - -0.4 3,629,352 - -0.8 3,629,352 - +0.9 3,629,433 + +1.0 3,629,499 + -1.6 3,629,915 + Psyr_3031 0.36 -0.2 3,629,915 + Psyr_3031 0.36 +1.5 3,629,915 + Psyr_3031 0.36 -0.8 3,629,915 + Psyr_3031 0.36 -1.4 3,629,916 - Psyr_3031 0.36 +0.6 3,630,205 + Psyr_3031 0.60 -0.4 3,630,205 + Psyr_3031 0.60 +0.6 3,630,206 - Psyr_3031 0.60 +0.8 3,630,206 - Psyr_3031 0.60 +0.6 3,630,206 - Psyr_3031 0.60 -0.8 3,630,690 + -0.7 3,630,691 - +0.2 3,630,787 - +1.2 3,631,069 + Psyr_3032 0.40 +0.1 3,631,069 + Psyr_3032 0.40 -2.3 3,631,070 - Psyr_3032 0.40 +2.3 3,631,145 + Psyr_3032 0.56 +1.5 3,631,145 + Psyr_3032 0.56 -0.4 3,631,146 - Psyr_3032 0.56 +1.6 3,631,146 - Psyr_3032 0.56 +0.5 3,631,146 - Psyr_3032 0.56 +0.9 3,631,146 - Psyr_3032 0.56 +1.1 3,631,224 + Psyr_3032 0.72 -0.1 3,631,255 + Psyr_3032 0.79 +0.6 3,631,256 - Psyr_3032 0.79 -1.7 3,631,258 - Psyr_3032 0.79 +0.0 3,631,355 - -0.2 3,631,374 + +0.4 3,631,643 + Psyr_3033 0.18 -1.6 3,631,644 - Psyr_3033 0.18 +1.2 3,631,644 - Psyr_3033 0.18 -0.4 3,631,666 + Psyr_3033 0.20 +0.1 3,631,666 + Psyr_3033 0.20 -1.9 3,631,667 - Psyr_3033 0.21 -0.6
Or see this region's nucleotide sequence