Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2742

Experiment: 4-hydroxybutyric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2741 and Psyr_2742 are separated by 3 nucleotidesPsyr_2742 and Psyr_2743 are separated by 24 nucleotidesPsyr_2743 and Psyr_2744 are separated by 15 nucleotides Psyr_2741: Psyr_2741 - Beta-lactamase, at 3,326,933 to 3,328,123 _2741 Psyr_2742: Psyr_2742 - Iron-containing alcohol dehydrogenase, at 3,328,127 to 3,329,281 _2742 Psyr_2743: Psyr_2743 - Lysine exporter protein (LYSE/YGGA), at 3,329,306 to 3,329,950 _2743 Psyr_2744: Psyr_2744 - conserved hypothetical protein, at 3,329,966 to 3,331,708 _2744 Position (kb) 3328 3329 3330Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3327.313 kb on - strand, within Psyr_2741at 3327.355 kb on - strand, within Psyr_2741at 3327.593 kb on + strand, within Psyr_2741at 3327.593 kb on + strandat 3327.594 kb on - strand, within Psyr_2741at 3327.594 kb on - strand, within Psyr_2741at 3327.594 kb on - strand, within Psyr_2741at 3327.612 kb on + strand, within Psyr_2741at 3328.097 kb on + strandat 3328.164 kb on + strandat 3328.164 kb on + strandat 3328.165 kb on - strandat 3328.273 kb on + strand, within Psyr_2742at 3328.273 kb on + strand, within Psyr_2742at 3328.273 kb on + strand, within Psyr_2742at 3328.273 kb on + strand, within Psyr_2742at 3328.273 kb on + strand, within Psyr_2742at 3328.274 kb on - strand, within Psyr_2742at 3328.274 kb on - strand, within Psyr_2742at 3328.274 kb on - strand, within Psyr_2742at 3328.274 kb on - strand, within Psyr_2742at 3328.274 kb on - strand, within Psyr_2742at 3328.274 kb on - strand, within Psyr_2742at 3328.353 kb on + strand, within Psyr_2742at 3328.411 kb on - strand, within Psyr_2742at 3328.452 kb on + strand, within Psyr_2742at 3329.031 kb on + strand, within Psyr_2742at 3329.031 kb on + strand, within Psyr_2742at 3329.032 kb on - strand, within Psyr_2742at 3329.144 kb on - strand, within Psyr_2742at 3329.189 kb on + strandat 3329.189 kb on + strandat 3329.189 kb on + strandat 3329.189 kb on + strandat 3329.189 kb on + strandat 3329.189 kb on + strandat 3329.190 kb on - strandat 3329.190 kb on - strandat 3329.190 kb on - strandat 3329.190 kb on - strandat 3329.190 kb on - strandat 3329.190 kb on - strandat 3329.190 kb on - strandat 3329.288 kb on - strandat 3329.295 kb on + strandat 3329.410 kb on - strand, within Psyr_2743at 3329.490 kb on - strand, within Psyr_2743at 3329.553 kb on + strandat 3329.553 kb on + strand, within Psyr_2743at 3329.553 kb on + strand, within Psyr_2743at 3329.554 kb on - strand, within Psyr_2743at 3329.554 kb on - strand, within Psyr_2743at 3329.604 kb on + strand, within Psyr_2743at 3329.704 kb on - strand, within Psyr_2743at 3329.950 kb on + strandat 3329.950 kb on + strandat 3329.953 kb on + strandat 3330.105 kb on + strandat 3330.105 kb on + strandat 3330.106 kb on - strandat 3330.106 kb on - strandat 3330.114 kb on + strandat 3330.114 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C)
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3,327,313 - Psyr_2741 0.32 +2.2
3,327,355 - Psyr_2741 0.35 -0.9
3,327,593 + Psyr_2741 0.55 +1.7
3,327,593 + +0.4
3,327,594 - Psyr_2741 0.55 -1.3
3,327,594 - Psyr_2741 0.55 -0.4
3,327,594 - Psyr_2741 0.55 -0.3
3,327,612 + Psyr_2741 0.57 -0.1
3,328,097 + +0.1
3,328,164 + +0.3
3,328,164 + +2.6
3,328,165 - -0.5
3,328,273 + Psyr_2742 0.13 -0.2
3,328,273 + Psyr_2742 0.13 +1.3
3,328,273 + Psyr_2742 0.13 -0.2
3,328,273 + Psyr_2742 0.13 -0.0
3,328,273 + Psyr_2742 0.13 +2.0
3,328,274 - Psyr_2742 0.13 +0.5
3,328,274 - Psyr_2742 0.13 -2.4
3,328,274 - Psyr_2742 0.13 -0.4
3,328,274 - Psyr_2742 0.13 -1.1
3,328,274 - Psyr_2742 0.13 +1.4
3,328,274 - Psyr_2742 0.13 -1.1
3,328,353 + Psyr_2742 0.20 -0.6
3,328,411 - Psyr_2742 0.25 +0.8
3,328,452 + Psyr_2742 0.28 +2.6
3,329,031 + Psyr_2742 0.78 +0.1
3,329,031 + Psyr_2742 0.78 +0.6
3,329,032 - Psyr_2742 0.78 -0.2
3,329,144 - Psyr_2742 0.88 -1.2
3,329,189 + -1.6
3,329,189 + -0.3
3,329,189 + +1.0
3,329,189 + +1.2
3,329,189 + -3.8
3,329,189 + +1.0
3,329,190 - -0.6
3,329,190 - -0.6
3,329,190 - -0.3
3,329,190 - +0.5
3,329,190 - +0.8
3,329,190 - +0.9
3,329,190 - -1.3
3,329,288 - -1.4
3,329,295 + -1.3
3,329,410 - Psyr_2743 0.16 -0.7
3,329,490 - Psyr_2743 0.29 +0.6
3,329,553 + +1.0
3,329,553 + Psyr_2743 0.38 +0.8
3,329,553 + Psyr_2743 0.38 -0.6
3,329,554 - Psyr_2743 0.38 -1.6
3,329,554 - Psyr_2743 0.38 -0.3
3,329,604 + Psyr_2743 0.46 -0.8
3,329,704 - Psyr_2743 0.62 -0.6
3,329,950 + -2.9
3,329,950 + -0.4
3,329,953 + +1.7
3,330,105 + +1.4
3,330,105 + -0.6
3,330,106 - -1.7
3,330,106 - -3.6
3,330,114 + -0.6
3,330,114 + -2.1

Or see this region's nucleotide sequence