Experiment: 4-hydroxybutyric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2741 and Psyr_2742 are separated by 3 nucleotides Psyr_2742 and Psyr_2743 are separated by 24 nucleotides Psyr_2743 and Psyr_2744 are separated by 15 nucleotides
Psyr_2741: Psyr_2741 - Beta-lactamase, at 3,326,933 to 3,328,123
_2741
Psyr_2742: Psyr_2742 - Iron-containing alcohol dehydrogenase, at 3,328,127 to 3,329,281
_2742
Psyr_2743: Psyr_2743 - Lysine exporter protein (LYSE/YGGA), at 3,329,306 to 3,329,950
_2743
Psyr_2744: Psyr_2744 - conserved hypothetical protein, at 3,329,966 to 3,331,708
_2744
Position (kb)
3328
3329
3330 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3327.313 kb on - strand, within Psyr_2741 at 3327.355 kb on - strand, within Psyr_2741 at 3327.593 kb on + strand, within Psyr_2741 at 3327.593 kb on + strand at 3327.594 kb on - strand, within Psyr_2741 at 3327.594 kb on - strand, within Psyr_2741 at 3327.594 kb on - strand, within Psyr_2741 at 3327.612 kb on + strand, within Psyr_2741 at 3328.097 kb on + strand at 3328.164 kb on + strand at 3328.164 kb on + strand at 3328.165 kb on - strand at 3328.273 kb on + strand, within Psyr_2742 at 3328.273 kb on + strand, within Psyr_2742 at 3328.273 kb on + strand, within Psyr_2742 at 3328.273 kb on + strand, within Psyr_2742 at 3328.273 kb on + strand, within Psyr_2742 at 3328.274 kb on - strand, within Psyr_2742 at 3328.274 kb on - strand, within Psyr_2742 at 3328.274 kb on - strand, within Psyr_2742 at 3328.274 kb on - strand, within Psyr_2742 at 3328.274 kb on - strand, within Psyr_2742 at 3328.274 kb on - strand, within Psyr_2742 at 3328.353 kb on + strand, within Psyr_2742 at 3328.411 kb on - strand, within Psyr_2742 at 3328.452 kb on + strand, within Psyr_2742 at 3329.031 kb on + strand, within Psyr_2742 at 3329.031 kb on + strand, within Psyr_2742 at 3329.032 kb on - strand, within Psyr_2742 at 3329.144 kb on - strand, within Psyr_2742 at 3329.189 kb on + strand at 3329.189 kb on + strand at 3329.189 kb on + strand at 3329.189 kb on + strand at 3329.189 kb on + strand at 3329.189 kb on + strand at 3329.190 kb on - strand at 3329.190 kb on - strand at 3329.190 kb on - strand at 3329.190 kb on - strand at 3329.190 kb on - strand at 3329.190 kb on - strand at 3329.190 kb on - strand at 3329.288 kb on - strand at 3329.295 kb on + strand at 3329.410 kb on - strand, within Psyr_2743 at 3329.490 kb on - strand, within Psyr_2743 at 3329.553 kb on + strand at 3329.553 kb on + strand, within Psyr_2743 at 3329.553 kb on + strand, within Psyr_2743 at 3329.554 kb on - strand, within Psyr_2743 at 3329.554 kb on - strand, within Psyr_2743 at 3329.604 kb on + strand, within Psyr_2743 at 3329.704 kb on - strand, within Psyr_2743 at 3329.950 kb on + strand at 3329.950 kb on + strand at 3329.953 kb on + strand at 3330.105 kb on + strand at 3330.105 kb on + strand at 3330.106 kb on - strand at 3330.106 kb on - strand at 3330.114 kb on + strand at 3330.114 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C) remove 3,327,313 - Psyr_2741 0.32 +2.2 3,327,355 - Psyr_2741 0.35 -0.9 3,327,593 + Psyr_2741 0.55 +1.7 3,327,593 + +0.4 3,327,594 - Psyr_2741 0.55 -1.3 3,327,594 - Psyr_2741 0.55 -0.4 3,327,594 - Psyr_2741 0.55 -0.3 3,327,612 + Psyr_2741 0.57 -0.1 3,328,097 + +0.1 3,328,164 + +0.3 3,328,164 + +2.6 3,328,165 - -0.5 3,328,273 + Psyr_2742 0.13 -0.2 3,328,273 + Psyr_2742 0.13 +1.3 3,328,273 + Psyr_2742 0.13 -0.2 3,328,273 + Psyr_2742 0.13 -0.0 3,328,273 + Psyr_2742 0.13 +2.0 3,328,274 - Psyr_2742 0.13 +0.5 3,328,274 - Psyr_2742 0.13 -2.4 3,328,274 - Psyr_2742 0.13 -0.4 3,328,274 - Psyr_2742 0.13 -1.1 3,328,274 - Psyr_2742 0.13 +1.4 3,328,274 - Psyr_2742 0.13 -1.1 3,328,353 + Psyr_2742 0.20 -0.6 3,328,411 - Psyr_2742 0.25 +0.8 3,328,452 + Psyr_2742 0.28 +2.6 3,329,031 + Psyr_2742 0.78 +0.1 3,329,031 + Psyr_2742 0.78 +0.6 3,329,032 - Psyr_2742 0.78 -0.2 3,329,144 - Psyr_2742 0.88 -1.2 3,329,189 + -1.6 3,329,189 + -0.3 3,329,189 + +1.0 3,329,189 + +1.2 3,329,189 + -3.8 3,329,189 + +1.0 3,329,190 - -0.6 3,329,190 - -0.6 3,329,190 - -0.3 3,329,190 - +0.5 3,329,190 - +0.8 3,329,190 - +0.9 3,329,190 - -1.3 3,329,288 - -1.4 3,329,295 + -1.3 3,329,410 - Psyr_2743 0.16 -0.7 3,329,490 - Psyr_2743 0.29 +0.6 3,329,553 + +1.0 3,329,553 + Psyr_2743 0.38 +0.8 3,329,553 + Psyr_2743 0.38 -0.6 3,329,554 - Psyr_2743 0.38 -1.6 3,329,554 - Psyr_2743 0.38 -0.3 3,329,604 + Psyr_2743 0.46 -0.8 3,329,704 - Psyr_2743 0.62 -0.6 3,329,950 + -2.9 3,329,950 + -0.4 3,329,953 + +1.7 3,330,105 + +1.4 3,330,105 + -0.6 3,330,106 - -1.7 3,330,106 - -3.6 3,330,114 + -0.6 3,330,114 + -2.1
Or see this region's nucleotide sequence