Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2125

Experiment: 4-hydroxybutyric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2124 and Psyr_2125 are separated by 24 nucleotidesPsyr_2125 and Psyr_2126 overlap by 4 nucleotidesPsyr_2126 and Psyr_2127 are separated by 58 nucleotides Psyr_2124: Psyr_2124 - Benzoate transport, at 2,481,384 to 2,482,733 _2124 Psyr_2125: Psyr_2125 - 3-carboxy-cis,cis-muconate cycloisomerase, at 2,482,758 to 2,484,119 _2125 Psyr_2126: Psyr_2126 - 4-carboxymuconolactone decarboxylase, at 2,484,116 to 2,484,514 _2126 Psyr_2127: Psyr_2127 - outer membrane porin, at 2,484,573 to 2,485,829 _2127 Position (kb) 2482 2483 2484 2485Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2481.820 kb on - strand, within Psyr_2124at 2481.820 kb on - strand, within Psyr_2124at 2482.102 kb on + strand, within Psyr_2124at 2482.167 kb on + strand, within Psyr_2124at 2482.167 kb on + strand, within Psyr_2124at 2482.168 kb on - strand, within Psyr_2124at 2482.200 kb on + strand, within Psyr_2124at 2482.200 kb on + strand, within Psyr_2124at 2482.200 kb on + strand, within Psyr_2124at 2482.200 kb on + strand, within Psyr_2124at 2482.201 kb on - strand, within Psyr_2124at 2482.360 kb on - strand, within Psyr_2124at 2482.389 kb on + strand, within Psyr_2124at 2482.728 kb on - strandat 2482.791 kb on + strandat 2482.792 kb on - strandat 2482.792 kb on - strandat 2482.792 kb on - strandat 2483.062 kb on - strand, within Psyr_2125at 2483.062 kb on - strand, within Psyr_2125at 2484.055 kb on - strandat 2484.259 kb on + strand, within Psyr_2126at 2484.260 kb on - strand, within Psyr_2126at 2484.260 kb on - strand, within Psyr_2126at 2484.260 kb on - strand, within Psyr_2126at 2484.425 kb on + strandat 2484.425 kb on + strand, within Psyr_2126at 2484.426 kb on - strand, within Psyr_2126at 2484.634 kb on + strandat 2484.635 kb on - strandat 2484.703 kb on + strand, within Psyr_2127at 2484.703 kb on + strand, within Psyr_2127at 2484.703 kb on + strand, within Psyr_2127at 2484.703 kb on + strand, within Psyr_2127at 2484.703 kb on + strand, within Psyr_2127at 2484.703 kb on + strand, within Psyr_2127at 2484.704 kb on - strand, within Psyr_2127at 2484.704 kb on - strand, within Psyr_2127at 2484.704 kb on - strand, within Psyr_2127at 2484.704 kb on - strand, within Psyr_2127at 2484.778 kb on + strand, within Psyr_2127at 2484.779 kb on - strand, within Psyr_2127at 2484.779 kb on - strand, within Psyr_2127at 2484.826 kb on + strand, within Psyr_2127at 2484.880 kb on + strand, within Psyr_2127at 2484.880 kb on + strand, within Psyr_2127at 2484.880 kb on + strand, within Psyr_2127at 2484.880 kb on + strand, within Psyr_2127at 2484.880 kb on + strand, within Psyr_2127at 2484.881 kb on - strand, within Psyr_2127at 2484.881 kb on - strand, within Psyr_2127at 2484.881 kb on - strand, within Psyr_2127at 2484.965 kb on - strand, within Psyr_2127at 2485.063 kb on + strand, within Psyr_2127at 2485.063 kb on + strand, within Psyr_2127at 2485.063 kb on + strand, within Psyr_2127at 2485.064 kb on - strand, within Psyr_2127

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C)
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2,481,820 - Psyr_2124 0.32 +1.4
2,481,820 - Psyr_2124 0.32 +0.4
2,482,102 + Psyr_2124 0.53 -1.1
2,482,167 + Psyr_2124 0.58 -0.7
2,482,167 + Psyr_2124 0.58 +1.6
2,482,168 - Psyr_2124 0.58 +0.2
2,482,200 + Psyr_2124 0.60 -1.4
2,482,200 + Psyr_2124 0.60 -1.0
2,482,200 + Psyr_2124 0.60 +0.6
2,482,200 + Psyr_2124 0.60 +0.9
2,482,201 - Psyr_2124 0.61 +0.7
2,482,360 - Psyr_2124 0.72 +1.1
2,482,389 + Psyr_2124 0.74 -0.1
2,482,728 - -1.4
2,482,791 + +1.2
2,482,792 - -1.2
2,482,792 - +1.4
2,482,792 - -0.2
2,483,062 - Psyr_2125 0.22 +0.2
2,483,062 - Psyr_2125 0.22 -1.4
2,484,055 - +1.2
2,484,259 + Psyr_2126 0.36 +0.2
2,484,260 - Psyr_2126 0.36 -0.4
2,484,260 - Psyr_2126 0.36 -0.8
2,484,260 - Psyr_2126 0.36 -0.4
2,484,425 + -1.4
2,484,425 + Psyr_2126 0.77 +2.3
2,484,426 - Psyr_2126 0.78 -0.6
2,484,634 + -1.4
2,484,635 - -0.7
2,484,703 + Psyr_2127 0.10 +1.0
2,484,703 + Psyr_2127 0.10 -1.6
2,484,703 + Psyr_2127 0.10 -0.4
2,484,703 + Psyr_2127 0.10 +1.6
2,484,703 + Psyr_2127 0.10 +0.9
2,484,703 + Psyr_2127 0.10 -0.2
2,484,704 - Psyr_2127 0.10 -3.0
2,484,704 - Psyr_2127 0.10 +0.7
2,484,704 - Psyr_2127 0.10 -0.7
2,484,704 - Psyr_2127 0.10 -1.3
2,484,778 + Psyr_2127 0.16 +0.4
2,484,779 - Psyr_2127 0.16 +2.8
2,484,779 - Psyr_2127 0.16 -0.0
2,484,826 + Psyr_2127 0.20 -1.0
2,484,880 + Psyr_2127 0.24 -3.4
2,484,880 + Psyr_2127 0.24 +0.4
2,484,880 + Psyr_2127 0.24 -2.0
2,484,880 + Psyr_2127 0.24 -0.5
2,484,880 + Psyr_2127 0.24 -0.2
2,484,881 - Psyr_2127 0.25 -1.2
2,484,881 - Psyr_2127 0.25 +1.8
2,484,881 - Psyr_2127 0.25 +1.0
2,484,965 - Psyr_2127 0.31 -0.4
2,485,063 + Psyr_2127 0.39 -0.4
2,485,063 + Psyr_2127 0.39 -0.4
2,485,063 + Psyr_2127 0.39 +1.2
2,485,064 - Psyr_2127 0.39 -2.7

Or see this region's nucleotide sequence