Experiment: 4-hydroxybutyric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2124 and Psyr_2125 are separated by 24 nucleotides Psyr_2125 and Psyr_2126 overlap by 4 nucleotides Psyr_2126 and Psyr_2127 are separated by 58 nucleotides
Psyr_2124: Psyr_2124 - Benzoate transport, at 2,481,384 to 2,482,733
_2124
Psyr_2125: Psyr_2125 - 3-carboxy-cis,cis-muconate cycloisomerase, at 2,482,758 to 2,484,119
_2125
Psyr_2126: Psyr_2126 - 4-carboxymuconolactone decarboxylase, at 2,484,116 to 2,484,514
_2126
Psyr_2127: Psyr_2127 - outer membrane porin, at 2,484,573 to 2,485,829
_2127
Position (kb)
2482
2483
2484
2485 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2481.820 kb on - strand, within Psyr_2124 at 2481.820 kb on - strand, within Psyr_2124 at 2482.102 kb on + strand, within Psyr_2124 at 2482.167 kb on + strand, within Psyr_2124 at 2482.167 kb on + strand, within Psyr_2124 at 2482.168 kb on - strand, within Psyr_2124 at 2482.200 kb on + strand, within Psyr_2124 at 2482.200 kb on + strand, within Psyr_2124 at 2482.200 kb on + strand, within Psyr_2124 at 2482.200 kb on + strand, within Psyr_2124 at 2482.201 kb on - strand, within Psyr_2124 at 2482.360 kb on - strand, within Psyr_2124 at 2482.389 kb on + strand, within Psyr_2124 at 2482.728 kb on - strand at 2482.791 kb on + strand at 2482.792 kb on - strand at 2482.792 kb on - strand at 2482.792 kb on - strand at 2483.062 kb on - strand, within Psyr_2125 at 2483.062 kb on - strand, within Psyr_2125 at 2484.055 kb on - strand at 2484.259 kb on + strand, within Psyr_2126 at 2484.260 kb on - strand, within Psyr_2126 at 2484.260 kb on - strand, within Psyr_2126 at 2484.260 kb on - strand, within Psyr_2126 at 2484.425 kb on + strand at 2484.425 kb on + strand, within Psyr_2126 at 2484.426 kb on - strand, within Psyr_2126 at 2484.634 kb on + strand at 2484.635 kb on - strand at 2484.703 kb on + strand, within Psyr_2127 at 2484.703 kb on + strand, within Psyr_2127 at 2484.703 kb on + strand, within Psyr_2127 at 2484.703 kb on + strand, within Psyr_2127 at 2484.703 kb on + strand, within Psyr_2127 at 2484.703 kb on + strand, within Psyr_2127 at 2484.704 kb on - strand, within Psyr_2127 at 2484.704 kb on - strand, within Psyr_2127 at 2484.704 kb on - strand, within Psyr_2127 at 2484.704 kb on - strand, within Psyr_2127 at 2484.778 kb on + strand, within Psyr_2127 at 2484.779 kb on - strand, within Psyr_2127 at 2484.779 kb on - strand, within Psyr_2127 at 2484.826 kb on + strand, within Psyr_2127 at 2484.880 kb on + strand, within Psyr_2127 at 2484.880 kb on + strand, within Psyr_2127 at 2484.880 kb on + strand, within Psyr_2127 at 2484.880 kb on + strand, within Psyr_2127 at 2484.880 kb on + strand, within Psyr_2127 at 2484.881 kb on - strand, within Psyr_2127 at 2484.881 kb on - strand, within Psyr_2127 at 2484.881 kb on - strand, within Psyr_2127 at 2484.965 kb on - strand, within Psyr_2127 at 2485.063 kb on + strand, within Psyr_2127 at 2485.063 kb on + strand, within Psyr_2127 at 2485.063 kb on + strand, within Psyr_2127 at 2485.064 kb on - strand, within Psyr_2127
Per-strain Table
Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C) remove 2,481,820 - Psyr_2124 0.32 +1.4 2,481,820 - Psyr_2124 0.32 +0.4 2,482,102 + Psyr_2124 0.53 -1.1 2,482,167 + Psyr_2124 0.58 -0.7 2,482,167 + Psyr_2124 0.58 +1.6 2,482,168 - Psyr_2124 0.58 +0.2 2,482,200 + Psyr_2124 0.60 -1.4 2,482,200 + Psyr_2124 0.60 -1.0 2,482,200 + Psyr_2124 0.60 +0.6 2,482,200 + Psyr_2124 0.60 +0.9 2,482,201 - Psyr_2124 0.61 +0.7 2,482,360 - Psyr_2124 0.72 +1.1 2,482,389 + Psyr_2124 0.74 -0.1 2,482,728 - -1.4 2,482,791 + +1.2 2,482,792 - -1.2 2,482,792 - +1.4 2,482,792 - -0.2 2,483,062 - Psyr_2125 0.22 +0.2 2,483,062 - Psyr_2125 0.22 -1.4 2,484,055 - +1.2 2,484,259 + Psyr_2126 0.36 +0.2 2,484,260 - Psyr_2126 0.36 -0.4 2,484,260 - Psyr_2126 0.36 -0.8 2,484,260 - Psyr_2126 0.36 -0.4 2,484,425 + -1.4 2,484,425 + Psyr_2126 0.77 +2.3 2,484,426 - Psyr_2126 0.78 -0.6 2,484,634 + -1.4 2,484,635 - -0.7 2,484,703 + Psyr_2127 0.10 +1.0 2,484,703 + Psyr_2127 0.10 -1.6 2,484,703 + Psyr_2127 0.10 -0.4 2,484,703 + Psyr_2127 0.10 +1.6 2,484,703 + Psyr_2127 0.10 +0.9 2,484,703 + Psyr_2127 0.10 -0.2 2,484,704 - Psyr_2127 0.10 -3.0 2,484,704 - Psyr_2127 0.10 +0.7 2,484,704 - Psyr_2127 0.10 -0.7 2,484,704 - Psyr_2127 0.10 -1.3 2,484,778 + Psyr_2127 0.16 +0.4 2,484,779 - Psyr_2127 0.16 +2.8 2,484,779 - Psyr_2127 0.16 -0.0 2,484,826 + Psyr_2127 0.20 -1.0 2,484,880 + Psyr_2127 0.24 -3.4 2,484,880 + Psyr_2127 0.24 +0.4 2,484,880 + Psyr_2127 0.24 -2.0 2,484,880 + Psyr_2127 0.24 -0.5 2,484,880 + Psyr_2127 0.24 -0.2 2,484,881 - Psyr_2127 0.25 -1.2 2,484,881 - Psyr_2127 0.25 +1.8 2,484,881 - Psyr_2127 0.25 +1.0 2,484,965 - Psyr_2127 0.31 -0.4 2,485,063 + Psyr_2127 0.39 -0.4 2,485,063 + Psyr_2127 0.39 -0.4 2,485,063 + Psyr_2127 0.39 +1.2 2,485,064 - Psyr_2127 0.39 -2.7
Or see this region's nucleotide sequence