Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1758

Experiment: 4-hydroxybutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-hydroxybutyric (C)
1,996,753	+		Psyr_1757	0.30	-0.9
1,996,753	+		Psyr_1757	0.30	-1.4
1,996,753	+		Psyr_1757	0.30	-2.8
1,996,753	+		Psyr_1757	0.30	-0.2
1,996,753	+		Psyr_1757	0.30	-0.6
1,996,754	-		Psyr_1757	0.30	-1.8
1,996,754	-		Psyr_1757	0.30	+0.3
1,996,858	+		Psyr_1757	0.40	-2.1
1,996,859	-		Psyr_1757	0.40	+0.5
1,996,859	-		Psyr_1757	0.40	-1.6
1,996,866	+		Psyr_1757	0.41	-1.2
1,996,894	+		Psyr_1757	0.43	-0.3
1,996,895	-		Psyr_1757	0.43	-1.2
1,996,937	-		Psyr_1757	0.47	-0.2
1,996,937	-		Psyr_1757	0.47	-0.5
1,997,025	+		Psyr_1757	0.56	-0.2
1,997,026	-		Psyr_1757	0.56	-0.9
1,997,026	-		Psyr_1757	0.56	-2.0
1,997,086	+		Psyr_1757	0.61	-2.8
1,997,086	+		Psyr_1757	0.61	-2.2
1,997,086	+		Psyr_1757	0.61	-0.2
1,997,087	-		Psyr_1757	0.61	-3.2
1,997,087	-		Psyr_1757	0.61	+1.4
1,997,087	-		Psyr_1757	0.61	-1.3
1,997,087	-		Psyr_1757	0.61	-3.8
1,997,087	-		Psyr_1757	0.61	-1.0
1,997,087	-		Psyr_1757	0.61	-0.5
1,997,087	-		Psyr_1757	0.61	-2.5
1,997,200	+		Psyr_1757	0.72	-0.6
1,997,201	-		Psyr_1757	0.72	-0.5
1,997,201	-		Psyr_1757	0.72	-2.5
1,997,201	-		Psyr_1757	0.72	-1.6
1,997,251	+		Psyr_1757	0.77	-2.9
1,997,251	+		Psyr_1757	0.77	-0.2
1,997,252	-		Psyr_1757	0.77	-2.2
1,997,252	-		Psyr_1757	0.77	-3.7
1,997,252	-		Psyr_1757	0.77	-0.2
1,997,252	-		Psyr_1757	0.77	-1.3
1,997,252	-		Psyr_1757	0.77	-1.8
1,997,489	+				-0.4
1,997,489	+				-3.4
1,997,489	+				-0.2
1,997,489	+				+0.4
1,997,490	-				-2.1
1,997,491	+				+0.3
1,997,491	+				-3.4
1,997,491	+				-0.2
1,997,491	+				-2.2
1,997,491	+				-1.5
1,997,492	-				+0.1
1,997,492	-				-1.2
1,997,492	-				-1.4
1,997,688	+				+0.8
1,997,688	+				+0.8
1,997,688	+				-1.5
1,997,689	-				-2.2
1,997,689	-				-0.2
1,997,689	-				-0.4
1,997,851	-		Psyr_1758	0.19	-1.8
1,997,851	-		Psyr_1758	0.19	-1.9
1,997,937	+		Psyr_1758	0.23	-0.6
1,997,937	+		Psyr_1758	0.23	+0.1
1,997,938	-		Psyr_1758	0.23	-2.8
1,997,938	-		Psyr_1758	0.23	+1.1
1,997,938	-		Psyr_1758	0.23	-0.9
1,997,938	-		Psyr_1758	0.23	-1.6
1,998,000	+		Psyr_1758	0.27	-1.2
1,998,001	-		Psyr_1758	0.27	-0.5
1,998,001	-		Psyr_1758	0.27	-0.2
1,998,298	+		Psyr_1758	0.43	-0.4
1,998,582	+		Psyr_1758	0.58	-0.5
1,998,585	+		Psyr_1758	0.58	+1.2
1,998,585	+		Psyr_1758	0.58	+0.6
1,998,585	+		Psyr_1758	0.58	-2.0
1,998,586	-		Psyr_1758	0.58	-0.6
1,998,599	+		Psyr_1758	0.59	-2.3
1,998,599	+		Psyr_1758	0.59	+0.1
1,998,599	+		Psyr_1758	0.59	-1.3
1,998,600	-		Psyr_1758	0.59	-2.2
1,998,600	-		Psyr_1758	0.59	+0.8
1,998,612	+		Psyr_1758	0.60	+0.4
1,998,613	-		Psyr_1758	0.60	-3.0
1,998,613	-		Psyr_1758	0.60	-3.2
1,998,613	-		Psyr_1758	0.60	-0.8
1,998,666	+		Psyr_1758	0.63	+0.2
1,998,667	-		Psyr_1758	0.63	-0.8
1,998,667	-		Psyr_1758	0.63	-0.2
1,998,690	-		Psyr_1758	0.64	-0.8
1,998,705	+		Psyr_1758	0.65	+2.4
1,998,706	-		Psyr_1758	0.65	-0.2
1,998,885	+		Psyr_1758	0.74	+0.1
1,998,885	+		Psyr_1758	0.74	-0.2
1,998,885	+		Psyr_1758	0.74	+0.6
1,998,886	-		Psyr_1758	0.74	-0.2
1,998,897	+		Psyr_1758	0.75	-0.6
1,998,897	+		Psyr_1758	0.75	-3.5
1,998,897	+		Psyr_1758	0.75	-0.2
1,998,897	+		Psyr_1758	0.75	+0.4
1,998,897	+		Psyr_1758	0.75	-0.2
1,998,897	+		Psyr_1758	0.75	-0.0
1,998,897	+		Psyr_1758	0.75	-1.8
1,998,897	+		Psyr_1758	0.75	+0.1
1,998,898	-		Psyr_1758	0.75	-1.4
1,998,898	-		Psyr_1758	0.75	-3.9
1,998,898	-		Psyr_1758	0.75	-0.5
1,998,898	-		Psyr_1758	0.75	-0.6
1,998,898	-		Psyr_1758	0.75	+0.2
1,998,898	-		Psyr_1758	0.75	+1.6
1,998,898	-		Psyr_1758	0.75	-0.2
1,998,898	-		Psyr_1758	0.75	-1.5
1,998,898	-		Psyr_1758	0.75	+0.4
1,998,997	-		Psyr_1758	0.80	-1.2
1,998,997	-		Psyr_1758	0.80	-0.2
1,999,098	+		Psyr_1758	0.86	-0.4
1,999,407	+				+2.4
1,999,409	+				-1.2
1,999,419	+				-2.7
1,999,487	+				-0.8
1,999,487	+				-0.2
1,999,504	+				-2.1
1,999,607	+		Psyr_1759	0.14	+0.3
1,999,649	+		Psyr_1759	0.16	-1.8
1,999,736	+		Psyr_1759	0.21	-0.8
1,999,736	+		Psyr_1759	0.21	-1.9
1,999,736	+		Psyr_1759	0.21	-0.2
1,999,737	-		Psyr_1759	0.21	-1.4
1,999,737	-		Psyr_1759	0.21	-1.5
1,999,737	-		Psyr_1759	0.21	+0.7
1,999,799	+		Psyr_1759	0.24	-1.8
1,999,800	-		Psyr_1759	0.24	-1.6
1,999,800	-		Psyr_1759	0.24	-0.7
2,000,087	+		Psyr_1759	0.40	-1.9
2,000,087	+		Psyr_1759	0.40	-0.5
2,000,087	+		Psyr_1759	0.40	-2.3
2,000,087	+		Psyr_1759	0.40	+0.1
2,000,088	-		Psyr_1759	0.40	-0.4
2,000,088	-		Psyr_1759	0.40	+0.7
2,000,291	+		Psyr_1759	0.51	+0.4
2,000,327	+		Psyr_1759	0.53	-2.8
2,000,327	+		Psyr_1759	0.53	-1.8
2,000,327	+		Psyr_1759	0.53	-0.2
2,000,327	+		Psyr_1759	0.53	+0.3
2,000,327	+		Psyr_1759	0.53	-1.8
2,000,327	+		Psyr_1759	0.53	-0.4
2,000,327	+		Psyr_1759	0.53	-0.2
2,000,327	+		Psyr_1759	0.53	-1.5
2,000,327	+		Psyr_1759	0.53	-2.5
2,000,327	+		Psyr_1759	0.53	+0.4
2,000,328	-		Psyr_1759	0.53	+0.9
2,000,328	-		Psyr_1759	0.53	-0.4
2,000,328	-		Psyr_1759	0.53	-1.1
2,000,328	-		Psyr_1759	0.53	+2.1
2,000,328	-		Psyr_1759	0.53	-1.0
2,000,328	-		Psyr_1759	0.53	+0.5
2,000,328	-		Psyr_1759	0.53	-2.1
2,000,328	-		Psyr_1759	0.53	-1.2