Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1585

Experiment: 4-hydroxybutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-hydroxybutyric (C)
1,779,039	+				-0.6
1,779,039	+				-0.2
1,779,039	+				-1.2
1,779,040	-				+1.3
1,779,040	-				+0.8
1,779,114	+		Psyr_1584	0.14	-1.7
1,779,115	-		Psyr_1584	0.14	+1.1
1,779,129	+		Psyr_1584	0.16	-1.0
1,779,129	+		Psyr_1584	0.16	-0.9
1,779,129	+		Psyr_1584	0.16	+0.8
1,779,129	+		Psyr_1584	0.16	+0.1
1,779,129	+		Psyr_1584	0.16	+0.5
1,779,129	+		Psyr_1584	0.16	-2.0
1,779,130	-		Psyr_1584	0.16	-2.2
1,779,160	-		Psyr_1584	0.19	+0.3
1,779,160	-		Psyr_1584	0.19	-0.4
1,779,252	+		Psyr_1584	0.29	-2.5
1,779,252	+		Psyr_1584	0.29	-0.6
1,779,252	+		Psyr_1584	0.29	+1.6
1,779,252	+		Psyr_1584	0.29	+0.6
1,779,252	+		Psyr_1584	0.29	+2.8
1,779,252	+		Psyr_1584	0.29	-0.2
1,779,253	-		Psyr_1584	0.29	+0.9
1,779,253	-		Psyr_1584	0.29	+0.6
1,779,253	-		Psyr_1584	0.29	-3.2
1,779,253	-		Psyr_1584	0.29	-0.5
1,779,254	+		Psyr_1584	0.29	-1.5
1,779,254	+		Psyr_1584	0.29	-0.2
1,779,255	-		Psyr_1584	0.29	-0.2
1,779,255	-		Psyr_1584	0.29	+0.3
1,779,255	-		Psyr_1584	0.29	+1.4
1,779,255	-		Psyr_1584	0.29	+0.5
1,779,552	+		Psyr_1584	0.61	-1.2
1,779,553	-		Psyr_1584	0.61	-0.4
1,779,553	-		Psyr_1584	0.61	-0.2
1,779,594	+		Psyr_1584	0.65	-0.3
1,779,594	+		Psyr_1584	0.65	+0.8
1,779,594	+		Psyr_1584	0.65	+0.6
1,779,594	+		Psyr_1584	0.65	-0.2
1,779,594	+		Psyr_1584	0.65	-2.0
1,779,594	+		Psyr_1584	0.65	-1.1
1,779,595	-		Psyr_1584	0.66	-1.9
1,779,774	+		Psyr_1584	0.85	-0.2
1,779,774	+		Psyr_1584	0.85	+0.8
1,779,775	-		Psyr_1584	0.85	-0.6
1,779,775	-		Psyr_1584	0.85	-0.2
1,779,936	-				+3.2
1,779,936	-				+1.0
1,780,057	+				-1.9
1,780,057	+				-0.4
1,780,058	-				-2.2
1,780,115	+				-3.0
1,780,116	-				-2.2
1,780,391	+		Psyr_1585	0.12	-2.7
1,780,739	+		Psyr_1585	0.22	-0.2
1,780,874	+		Psyr_1585	0.26	-1.7
1,781,147	+		Psyr_1585	0.33	+1.0
1,781,148	-		Psyr_1585	0.33	-1.1
1,781,312	+		Psyr_1585	0.38	-1.9
1,781,313	-		Psyr_1585	0.38	+0.8
1,781,601	+		Psyr_1585	0.46	-2.2
1,781,601	+		Psyr_1585	0.46	-0.2
1,781,601	+		Psyr_1585	0.46	-1.7
1,781,601	+		Psyr_1585	0.46	-2.2
1,781,601	+		Psyr_1585	0.46	-1.4
1,781,601	+		Psyr_1585	0.46	-1.9
1,781,601	+		Psyr_1585	0.46	-0.2
1,781,602	-		Psyr_1585	0.46	-1.9
1,781,602	-		Psyr_1585	0.46	-3.0
1,781,602	-		Psyr_1585	0.46	-1.2
1,781,602	-		Psyr_1585	0.46	-3.3
1,782,104	-		Psyr_1585	0.61	-1.9
1,782,169	+		Psyr_1585	0.63	-2.5
1,782,274	+		Psyr_1585	0.66	-2.5
1,782,275	-		Psyr_1585	0.66	-2.3
1,782,275	-		Psyr_1585	0.66	-0.2
1,782,275	-		Psyr_1585	0.66	-0.6
1,782,275	-		Psyr_1585	0.66	-3.5
1,782,275	-		Psyr_1585	0.66	-0.8
1,782,604	+		Psyr_1585	0.75	-0.5
1,782,814	+		Psyr_1585	0.81	-2.7
1,782,814	+		Psyr_1585	0.81	-1.2
1,783,072	+		Psyr_1585	0.89	-0.2
1,783,073	-		Psyr_1585	0.89	-2.0
1,783,073	-		Psyr_1585	0.89	-0.6
1,783,073	-		Psyr_1585	0.89	-1.7
1,783,222	-				-0.6
1,783,247	-				-2.0
1,783,266	+				-1.2
1,783,266	+				-3.9
1,783,266	+				-1.7
1,783,266	+				-2.7
1,783,318	+				-1.6
1,783,318	+				-4.2
1,783,318	+				-1.7
1,783,319	-				-0.7
1,783,319	-				-0.2
1,783,340	-				+0.4
1,783,379	-				-1.3
1,783,391	-				-0.2
1,783,418	+				-1.7
1,783,418	+				-2.7
1,783,419	-				+0.8
1,783,420	+				-1.6
1,783,420	+				-2.7
1,783,420	+				-1.4
1,783,420	+				+0.8
1,783,420	+				-0.2
1,783,420	+				-1.2
1,783,420	+				+0.4
1,783,420	+				-3.7
1,783,420	+				-1.4
1,783,420	+				-2.2
1,783,420	+				-0.7
1,783,420	+				+0.1
1,783,420	+				-2.7
1,783,420	+				-1.5
1,783,420	+				-0.2
1,783,420	+				-3.3
1,783,420	+				-0.2
1,783,420	+				-1.0
1,783,420	+				-0.2
1,783,420	+				-1.7
1,783,420	+				-1.5
1,783,420	+				+3.2
1,783,420	+				-1.2
1,783,420	+				-2.3
1,783,420	+				-1.5
1,783,421	-				-1.6
1,783,421	-				-0.6
1,783,421	-				+0.4
1,783,421	-				-0.9
1,783,421	-				-1.2
1,783,421	-				+0.8
1,783,421	-				-1.7
1,783,421	-				-0.4
1,783,421	-				-0.0
1,783,421	-				-2.2
1,783,421	-				-0.2
1,783,421	-				-1.2
1,783,421	-				-1.4
1,783,421	-				-1.6
1,783,421	-				-1.7
1,783,421	-				-2.2
1,783,421	-				-0.4
1,783,421	-				-0.7
1,783,421	-				-2.5
1,783,421	-				-0.9
1,783,421	-				-1.5
1,783,421	-				-1.2
1,783,421	-				-0.6
1,783,421	-				-1.2
1,783,425	-				-1.2
1,783,463	+				+0.5
1,783,463	+				+0.1
1,783,463	+				+0.8
1,783,464	-				+0.4
1,783,464	-				-0.2
1,783,464	-				+1.4
1,783,480	+				-2.0
1,783,583	-				+1.3
1,783,639	+				-1.5
1,783,640	-				+1.3
1,783,640	-				-0.7
1,783,640	-				+1.1
1,783,829	+				-1.7
1,783,830	-				+1.5
1,783,830	-				+0.4
1,783,830	-				+3.7
1,783,862	+				-1.0
1,783,862	+				-1.5
1,783,862	+				-0.5
1,783,863	-				+0.8
1,783,863	-				+2.4
1,783,863	-				+2.0
1,783,863	-				+1.4
1,783,863	-				+1.8
1,783,863	-				+3.0
1,783,863	-				+1.5
1,783,863	-				+1.5
1,783,940	+		Psyr_1586	0.12	-0.3
1,784,093	+		Psyr_1586	0.21	+0.0
1,784,094	-		Psyr_1586	0.21	-0.2
1,784,222	+		Psyr_1586	0.28	+0.1
1,784,222	+		Psyr_1586	0.28	+1.8
1,784,222	+		Psyr_1586	0.28	-0.2
1,784,222	+		Psyr_1586	0.28	-0.5
1,784,223	-		Psyr_1586	0.28	-0.2
1,784,223	-		Psyr_1586	0.28	+3.2
1,784,437	+		Psyr_1586	0.39	+1.3
1,784,437	+		Psyr_1586	0.39	-0.5
1,784,441	+		Psyr_1586	0.39	+0.7
1,784,441	+		Psyr_1586	0.39	-0.9
1,784,441	+		Psyr_1586	0.39	+0.5
1,784,441	+		Psyr_1586	0.39	+1.3
1,784,441	+		Psyr_1586	0.39	-1.2
1,784,441	+		Psyr_1586	0.39	+0.6
1,784,442	-		Psyr_1586	0.39	+1.3
1,784,442	-		Psyr_1586	0.39	+0.2
1,784,442	-		Psyr_1586	0.39	-0.2
1,784,442	-		Psyr_1586	0.39	-0.5
1,784,442	-		Psyr_1586	0.39	-0.7
1,784,442	-		Psyr_1586	0.39	+0.2
1,784,442	-		Psyr_1586	0.39	+0.8
1,784,442	-		Psyr_1586	0.39	-2.7
1,784,442	-		Psyr_1586	0.39	+0.6
1,784,462	+		Psyr_1586	0.40	+0.2
1,784,462	+		Psyr_1586	0.40	+0.5