Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1576

Experiment: 4-hydroxybutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-hydroxybutyric (C)
1,770,369	+		Psyr_1574	0.87	+0.7
1,770,370	-		Psyr_1574	0.87	+1.4
1,770,370	-		Psyr_1574	0.87	+2.7
1,770,396	+		Psyr_1574	0.88	+1.4
1,770,397	-		Psyr_1574	0.88	-1.7
1,770,397	-		Psyr_1574	0.88	-0.2
1,770,399	+		Psyr_1574	0.88	+0.8
1,770,405	+		Psyr_1574	0.88	-0.5
1,770,406	-		Psyr_1574	0.88	-1.2
1,770,406	-		Psyr_1574	0.88	+0.7
1,770,580	-				-3.1
1,770,659	-				+0.8
1,770,678	+				+0.7
1,770,743	-				+3.7
1,770,763	+				-1.7
1,770,791	+				+1.0
1,770,920	-		Psyr_1575	0.30	+0.6
1,770,920	-		Psyr_1575	0.30	+1.8
1,770,920	-		Psyr_1575	0.30	-0.4
1,771,009	+		Psyr_1575	0.49	+0.0
1,771,010	-		Psyr_1575	0.49	+0.9
1,771,040	+		Psyr_1575	0.55	+0.0
1,771,040	+		Psyr_1575	0.55	+1.0
1,771,040	+		Psyr_1575	0.55	-0.7
1,771,040	+		Psyr_1575	0.55	-1.4
1,771,040	+		Psyr_1575	0.55	+1.7
1,771,040	+		Psyr_1575	0.55	-0.6
1,771,040	+		Psyr_1575	0.55	+0.8
1,771,040	+		Psyr_1575	0.55	-2.2
1,771,040	+		Psyr_1575	0.55	+1.5
1,771,040	+		Psyr_1575	0.55	+0.3
1,771,040	+		Psyr_1575	0.55	+0.1
1,771,040	+		Psyr_1575	0.55	+0.8
1,771,040	+		Psyr_1575	0.55	-1.1
1,771,040	+		Psyr_1575	0.55	+1.8
1,771,040	+		Psyr_1575	0.55	-0.6
1,771,040	+		Psyr_1575	0.55	+0.0
1,771,040	+		Psyr_1575	0.55	-1.3
1,771,040	+		Psyr_1575	0.55	-0.7
1,771,040	+		Psyr_1575	0.55	+0.2
1,771,040	+		Psyr_1575	0.55	+0.5
1,771,040	+		Psyr_1575	0.55	+0.5
1,771,040	+		Psyr_1575	0.55	+0.9
1,771,040	+		Psyr_1575	0.55	+2.5
1,771,040	+		Psyr_1575	0.55	+0.3
1,771,040	+		Psyr_1575	0.55	+1.0
1,771,040	+		Psyr_1575	0.55	+0.4
1,771,041	-		Psyr_1575	0.56	+0.3
1,771,041	-		Psyr_1575	0.56	+0.7
1,771,041	-		Psyr_1575	0.56	-0.7
1,771,041	-		Psyr_1575	0.56	+1.8
1,771,041	-		Psyr_1575	0.56	+0.4
1,771,041	-		Psyr_1575	0.56	+2.8
1,771,041	-		Psyr_1575	0.56	+0.7
1,771,041	-		Psyr_1575	0.56	-1.7
1,771,041	-		Psyr_1575	0.56	+2.7
1,771,041	-		Psyr_1575	0.56	-1.2
1,771,041	-		Psyr_1575	0.56	-0.6
1,771,041	-		Psyr_1575	0.56	+0.8
1,771,041	-		Psyr_1575	0.56	-1.6
1,771,041	-		Psyr_1575	0.56	+0.6
1,771,041	-		Psyr_1575	0.56	+1.4
1,771,041	-		Psyr_1575	0.56	-0.7
1,771,041	-		Psyr_1575	0.56	+0.4
1,771,041	-		Psyr_1575	0.56	-0.2
1,771,041	-		Psyr_1575	0.56	+0.6
1,771,041	-		Psyr_1575	0.56	+0.4
1,771,041	-		Psyr_1575	0.56	+2.1
1,771,041	-		Psyr_1575	0.56	+3.4
1,771,041	-		Psyr_1575	0.56	+1.2
1,771,045	+		Psyr_1575	0.56	+1.2
1,771,045	+		Psyr_1575	0.56	+1.4
1,771,045	+		Psyr_1575	0.56	+1.4
1,771,045	+		Psyr_1575	0.56	+1.2
1,771,045	+		Psyr_1575	0.56	-2.5
1,771,045	+		Psyr_1575	0.56	-0.4
1,771,045	+		Psyr_1575	0.56	-0.2
1,771,045	+		Psyr_1575	0.56	+0.5
1,771,045	+		Psyr_1575	0.56	+2.3
1,771,046	-		Psyr_1575	0.57	-3.5
1,771,046	-		Psyr_1575	0.57	+1.0
1,771,046	-		Psyr_1575	0.57	+1.0
1,771,046	-		Psyr_1575	0.57	+1.4
1,771,046	-		Psyr_1575	0.57	+0.7
1,771,046	-		Psyr_1575	0.57	+0.5
1,771,046	-		Psyr_1575	0.57	+0.2
1,771,187	+		Psyr_1575	0.86	+0.4
1,771,251	-				+1.3
1,771,339	+				-1.2
1,771,449	+		Psyr_1576	0.15	-1.2
1,771,450	-		Psyr_1576	0.15	+0.7
1,771,450	-		Psyr_1576	0.15	+0.2
1,771,559	+		Psyr_1576	0.29	+1.8
1,771,632	-		Psyr_1576	0.38	-1.5
1,771,827	-		Psyr_1576	0.62	+1.9
1,771,827	-		Psyr_1576	0.62	-0.5
1,771,883	+		Psyr_1576	0.69	+0.8
1,772,130	+				-0.2
1,772,131	-				-1.2
1,772,131	-				+0.2
1,772,149	-				+0.6
1,772,188	+				-2.3
1,772,257	+		Psyr_1577	0.15	+3.2
1,772,258	-		Psyr_1577	0.16	-2.5
1,772,312	-		Psyr_1577	0.26	+1.6
1,772,314	-		Psyr_1577	0.26	-0.6
1,772,368	+		Psyr_1577	0.37	+1.2
1,772,369	-		Psyr_1577	0.37	+2.0
1,772,547	+		Psyr_1577	0.71	+0.1
1,772,547	+		Psyr_1577	0.71	+1.4
1,772,547	+		Psyr_1577	0.71	-0.2
1,772,547	+		Psyr_1577	0.71	-1.0
1,772,547	+		Psyr_1577	0.71	-0.4
1,772,547	+		Psyr_1577	0.71	+0.5
1,772,547	+		Psyr_1577	0.71	+2.6
1,772,547	+		Psyr_1577	0.71	-0.2
1,772,547	+		Psyr_1577	0.71	+0.2
1,772,548	-		Psyr_1577	0.71	+0.4
1,772,548	-		Psyr_1577	0.71	-1.0
1,772,548	-		Psyr_1577	0.71	-0.7
1,772,548	-		Psyr_1577	0.71	-1.7
1,772,739	+				-0.9
1,772,739	+				-1.0
1,772,739	+				-0.2
1,772,739	+				+2.4
1,772,739	+				+0.0
1,772,739	+				+1.2
1,772,739	+				-0.2
1,772,739	+				+0.3
1,772,739	+				-0.8
1,772,740	-				+0.0
1,772,740	-				+0.8
1,772,740	-				-0.2
1,772,740	-				-0.9
1,772,740	-				-0.5
1,772,740	-				-0.7
1,772,740	-				-0.0
1,772,740	-				-0.2
1,772,740	-				-2.2
1,772,740	-				+3.0
1,772,741	+				+0.4
1,772,741	+				+1.4
1,772,741	+				-0.2
1,772,741	+				-1.2
1,772,741	+				-0.2
1,772,741	+				-2.2
1,772,741	+				-1.7
1,772,742	-				+1.7
1,772,742	-				+1.5
1,772,742	-				+0.8
1,772,742	-				+0.6
1,772,742	-				-3.0
1,772,761	+				+0.1
1,772,761	+				+1.2
1,772,761	+				-0.4
1,772,762	-				-0.5
1,772,762	-				+0.5
1,772,762	-				+1.9
1,772,765	+				-0.7
1,772,765	+				-0.3
1,772,765	+				+0.4
1,772,765	+				-1.2
1,772,765	+				-0.3
1,772,766	-				+1.2
1,772,766	-				+0.4
1,772,766	-				-0.2
1,772,766	-				+0.5
1,772,769	+				+2.1
1,772,888	+		Psyr_1578	0.21	+0.3
1,772,888	+		Psyr_1578	0.21	-1.0
1,772,888	+		Psyr_1578	0.21	+0.1
1,772,889	-		Psyr_1578	0.21	+0.4
1,772,889	-		Psyr_1578	0.21	+0.6
1,772,949	+		Psyr_1578	0.29	+0.3
1,772,949	+		Psyr_1578	0.29	+1.3
1,772,949	+		Psyr_1578	0.29	+0.8
1,772,950	-		Psyr_1578	0.30	+1.4
1,772,975	+		Psyr_1578	0.33	+0.5
1,772,976	-		Psyr_1578	0.33	-1.2
1,772,976	-		Psyr_1578	0.33	+1.7
1,773,062	+		Psyr_1578	0.45	+2.8
1,773,063	-		Psyr_1578	0.45	+1.3
1,773,063	-		Psyr_1578	0.45	+1.3
1,773,063	-		Psyr_1578	0.45	-0.2
1,773,063	-		Psyr_1578	0.45	-0.2
1,773,066	+		Psyr_1578	0.46	-0.3