Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1563

Experiment: 4-hydroxybutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-hydroxybutyric (C)
1,759,064	+		Psyr_1562	0.55	+0.8
1,759,064	+		Psyr_1562	0.55	-1.3
1,759,064	+		Psyr_1562	0.55	+1.2
1,759,065	-		Psyr_1562	0.55	-0.1
1,759,065	-		Psyr_1562	0.55	-1.2
1,759,065	-				-0.2
1,759,107	+		Psyr_1562	0.57	+0.1
1,759,108	-		Psyr_1562	0.57	+0.2
1,759,108	-		Psyr_1562	0.57	+1.4
1,759,125	+		Psyr_1562	0.58	-0.4
1,759,126	-		Psyr_1562	0.58	-2.3
1,759,126	-		Psyr_1562	0.58	+0.8
1,759,248	+		Psyr_1562	0.66	+0.5
1,759,248	+		Psyr_1562	0.66	-0.7
1,759,248	+		Psyr_1562	0.66	-0.5
1,759,248	+		Psyr_1562	0.66	-1.0
1,759,248	+		Psyr_1562	0.66	-1.6
1,759,248	+		Psyr_1562	0.66	+0.1
1,759,248	+		Psyr_1562	0.66	+0.8
1,759,249	-		Psyr_1562	0.66	-1.5
1,759,249	-		Psyr_1562	0.66	+1.4
1,759,249	-		Psyr_1562	0.66	-1.3
1,759,249	-		Psyr_1562	0.66	+2.8
1,759,249	-		Psyr_1562	0.66	+1.0
1,759,249	-		Psyr_1562	0.66	+1.8
1,759,338	-		Psyr_1562	0.71	-0.2
1,759,338	-		Psyr_1562	0.71	-1.7
1,759,341	-		Psyr_1562	0.71	-0.6
1,759,341	-		Psyr_1562	0.71	-1.2
1,759,441	+		Psyr_1562	0.77	+3.2
1,759,442	-		Psyr_1562	0.77	-0.2
1,759,442	-		Psyr_1562	0.77	-0.6
1,759,442	-		Psyr_1562	0.77	+1.8
1,759,442	-		Psyr_1562	0.77	+0.1
1,759,442	-		Psyr_1562	0.77	-2.7
1,759,451	+		Psyr_1562	0.78	-1.7
1,759,452	-		Psyr_1562	0.78	+1.0
1,759,464	+		Psyr_1562	0.78	-0.3
1,759,464	+		Psyr_1562	0.78	+0.6
1,759,464	+		Psyr_1562	0.78	-0.4
1,759,464	+		Psyr_1562	0.78	+0.6
1,759,464	+		Psyr_1562	0.78	+0.6
1,759,464	+		Psyr_1562	0.78	+1.7
1,759,464	+		Psyr_1562	0.78	+1.3
1,759,464	+		Psyr_1562	0.78	-1.7
1,759,464	+		Psyr_1562	0.78	-0.2
1,759,464	+		Psyr_1562	0.78	+0.8
1,759,464	+		Psyr_1562	0.78	+1.8
1,759,465	-		Psyr_1562	0.78	+0.3
1,759,465	-		Psyr_1562	0.78	+0.6
1,759,465	-		Psyr_1562	0.78	+0.7
1,759,465	-		Psyr_1562	0.78	+0.2
1,759,465	-		Psyr_1562	0.78	+1.4
1,759,465	-		Psyr_1562	0.78	-0.2
1,759,465	-		Psyr_1562	0.78	-1.9
1,759,465	-		Psyr_1562	0.78	+0.3
1,759,465	-		Psyr_1562	0.78	-0.7
1,759,465	-		Psyr_1562	0.78	-2.5
1,759,465	-		Psyr_1562	0.78	+0.6
1,759,465	-		Psyr_1562	0.78	+2.2
1,759,465	-		Psyr_1562	0.78	-1.7
1,759,465	-		Psyr_1562	0.78	-0.4
1,759,465	-		Psyr_1562	0.78	+0.8
1,759,488	+		Psyr_1562	0.80	-1.6
1,759,489	-		Psyr_1562	0.80	+0.3
1,759,526	+		Psyr_1562	0.82	+0.3
1,759,526	+		Psyr_1562	0.82	+0.2
1,759,526	+		Psyr_1562	0.82	-0.7
1,759,527	-		Psyr_1562	0.82	+1.1
1,759,527	-		Psyr_1562	0.82	-1.7
1,759,560	-		Psyr_1562	0.84	-1.0
1,759,560	-		Psyr_1562	0.84	+0.4
1,759,560	-		Psyr_1562	0.84	+0.8
1,759,586	+		Psyr_1562	0.86	-0.9
1,759,586	+		Psyr_1562	0.86	+1.7
1,759,586	+		Psyr_1562	0.86	-0.3
1,759,586	+		Psyr_1562	0.86	-0.7
1,759,587	-		Psyr_1562	0.86	-2.7
1,759,587	-		Psyr_1562	0.86	+1.4
1,759,647	-		Psyr_1562	0.89	-0.5
1,759,647	-		Psyr_1562	0.89	+1.1
1,759,647	-		Psyr_1562	0.89	+0.8
1,759,763	+				+1.4
1,759,763	+				+0.2
1,759,764	-				-0.3
1,759,764	-				-1.7
1,759,764	-				+0.8
1,759,781	-				+0.1
1,759,823	+				-1.3
1,759,824	-				+1.3
1,759,979	+				+0.4
1,759,980	+				-0.2
1,759,980	+				-0.0
1,759,980	+				+2.7
1,759,980	+				-1.7
1,759,981	-				-1.3
1,759,981	-				-0.7
1,759,981	-				+1.1
1,759,981	-				+0.3
1,759,981	-				+0.1
1,759,981	-				+0.4
1,759,982	+				+0.5
1,759,982	+				-2.7
1,759,982	+				+0.8
1,759,982	+				-0.2
1,759,982	+				-0.6
1,759,982	+				-0.7
1,759,982	+				-3.0
1,759,982	+				-0.4
1,759,982	+				+1.1
1,759,982	+				-0.5
1,759,982	+				+1.0
1,759,982	+				-1.0
1,759,982	+				-1.3
1,759,982	+				-0.2
1,759,982	+				-0.2
1,759,982	+				+1.2
1,759,982	+				+1.0
1,759,983	-				+0.8
1,759,983	-				-2.9
1,759,983	-				+0.5
1,759,983	-				+0.0
1,759,983	-				+2.5
1,759,983	-				-1.2
1,759,983	-				-3.0
1,759,983	-				-0.0
1,759,983	-				-1.9
1,759,983	-				-1.2
1,759,983	-				+1.0
1,759,983	-				-0.2
1,759,983	-				-2.3
1,759,983	-				+0.7
1,759,983	-				+0.0
1,759,983	-				-1.4
1,759,983	-				+0.3
1,759,983	-				-0.2
1,759,983	-				-0.7
1,759,983	-				-1.1
1,759,983	-				+1.4
1,759,983	-				-0.2
1,759,983	-				-0.6
1,759,983	-				+0.2
1,759,983	-				-2.5
1,759,983	-				+0.2
1,759,984	+				-0.3
1,759,984	+				+0.2
1,759,984	+				+0.7
1,759,984	+				-1.2
1,759,984	+				-0.2
1,759,984	+				-1.7
1,759,984	+				+1.0
1,759,984	+				-1.4
1,759,984	+				+1.8
1,759,984	+				-0.7
1,759,984	+				+0.8
1,759,984	+				+0.6
1,759,984	+				-0.2
1,759,985	-				-1.2
1,759,985	-				-1.1
1,759,985	-				-0.5
1,759,985	-				-2.5
1,759,985	-				-0.6
1,759,985	-				+0.6
1,759,985	-				-0.6
1,759,985	-				-2.4
1,759,985	-				-1.3
1,759,985	-				-1.0
1,759,985	-				+0.2
1,759,985	-				-1.7
1,759,985	-				-0.7
1,759,985	-				-0.5
1,759,985	-				-1.7
1,760,505	+		Psyr_1563	0.43	-1.4
1,760,505	+		Psyr_1563	0.43	-2.5
1,760,505	+		Psyr_1563	0.43	+0.3
1,760,505	+		Psyr_1563	0.43	-2.0
1,760,543	+		Psyr_1563	0.47	-3.1
1,760,543	+		Psyr_1563	0.47	-4.1
1,760,543	+		Psyr_1563	0.47	-1.4
1,760,543	+		Psyr_1563	0.47	-3.0
1,760,543	+		Psyr_1563	0.47	-3.2
1,760,544	-		Psyr_1563	0.47	-1.2
1,760,544	-		Psyr_1563	0.47	+0.8
1,760,544	-		Psyr_1563	0.47	-1.7
1,760,544	-		Psyr_1563	0.47	-1.7
1,760,544	-		Psyr_1563	0.47	-3.6
1,760,544	-		Psyr_1563	0.47	-2.2
1,760,544	-		Psyr_1563	0.47	-2.5
1,760,544	-		Psyr_1563	0.47	-2.2
1,760,544	-		Psyr_1563	0.47	-4.0
1,760,615	+		Psyr_1563	0.53	-2.5
1,760,616	-		Psyr_1563	0.53	-2.7
1,761,193	+		Psyr_1564	0.16	-1.5
1,761,193	+		Psyr_1564	0.16	-0.4
1,761,193	+		Psyr_1564	0.16	-1.3
1,761,194	-		Psyr_1564	0.17	+0.4
1,761,194	-		Psyr_1564	0.17	-1.7
1,761,194	-		Psyr_1564	0.17	-0.8
1,761,194	-		Psyr_1564	0.17	-2.2
1,761,199	+		Psyr_1564	0.18	+0.7
1,761,199	+		Psyr_1564	0.18	-1.2
1,761,200	-		Psyr_1564	0.19	+0.1
1,761,200	-		Psyr_1564	0.19	+1.1
1,761,200	-		Psyr_1564	0.19	+0.5
1,761,200	-		Psyr_1564	0.19	+0.6
1,761,200	-		Psyr_1564	0.19	+0.0
1,761,200	-		Psyr_1564	0.19	+1.8
1,761,318	+		Psyr_1564	0.59	-0.6
1,761,319	-		Psyr_1564	0.59	+1.0
1,761,356	-		Psyr_1564	0.72	+0.3
1,761,388	+		Psyr_1564	0.83	-0.2
1,761,388	+		Psyr_1564	0.83	-3.5
1,761,388	+		Psyr_1564	0.83	-0.2
1,761,388	+		Psyr_1564	0.83	-1.0
1,761,389	-		Psyr_1564	0.83	+0.5
1,761,436	+				+2.9
1,761,436	+				+0.7
1,761,436	+				+0.6
1,761,436	+				+1.8
1,761,436	+				+0.8
1,761,436	+				-1.2
1,761,437	-				-0.2
1,761,437	-				-2.2
1,761,454	+				-1.9
1,761,455	-				+0.7
1,761,455	-				+1.4
1,761,545	+				+0.8
1,761,545	+				+0.3
1,761,545	+				+1.2
1,761,545	+				+1.3
1,761,546	-				-1.2
1,761,546	-				+0.8
1,761,546	-				-0.3
1,761,546	-				-1.7
1,761,818	+		Psyr_1565	0.33	+0.5
1,761,818	+		Psyr_1565	0.33	-0.3
1,761,818	+		Psyr_1565	0.33	+1.1
1,761,818	+		Psyr_1565	0.33	+0.4
1,761,818	+		Psyr_1565	0.33	-0.3
1,761,818	+		Psyr_1565	0.33	+0.1
1,761,818	+		Psyr_1565	0.33	+0.3
1,761,818	+		Psyr_1565	0.33	-0.2
1,761,819	-		Psyr_1565	0.33	-1.4
1,761,819	-		Psyr_1565	0.33	+0.2
1,761,819	-		Psyr_1565	0.33	+1.4
1,761,819	-		Psyr_1565	0.33	-0.5
1,761,819	-		Psyr_1565	0.33	-0.0
1,761,989	+		Psyr_1565	0.51	+0.3
1,761,990	-		Psyr_1565	0.52	+2.5
1,761,990	-		Psyr_1565	0.52	+0.1
1,762,079	+		Psyr_1565	0.61	+0.8
1,762,079	+		Psyr_1565	0.61	+2.5
1,762,080	-		Psyr_1565	0.61	-1.2
1,762,080	-		Psyr_1565	0.61	+0.7
1,762,080	-		Psyr_1565	0.61	+0.5
1,762,080	-		Psyr_1565	0.61	-1.4
1,762,080	-		Psyr_1565	0.61	-1.2
1,762,080	-		Psyr_1565	0.61	-2.2