Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1429

Experiment: 4-hydroxybutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-hydroxybutyric (C)
1,617,253	+		Psyr_1428	0.35	+1.2
1,617,254	-		Psyr_1428	0.35	+1.2
1,617,365	+		Psyr_1428	0.43	-0.5
1,617,366	-		Psyr_1428	0.43	-0.3
1,617,366	-		Psyr_1428	0.43	-0.8
1,617,366	-		Psyr_1428	0.43	-3.0
1,617,366	-		Psyr_1428	0.43	+0.8
1,617,425	+		Psyr_1428	0.48	+1.5
1,617,426	-		Psyr_1428	0.48	-0.8
1,617,426	-		Psyr_1428	0.48	-0.3
1,617,426	-		Psyr_1428	0.48	-0.2
1,617,437	+		Psyr_1428	0.48	-2.4
1,617,438	-		Psyr_1428	0.48	+0.1
1,617,438	-		Psyr_1428	0.48	-0.6
1,617,438	-		Psyr_1428	0.48	-1.2
1,617,470	-		Psyr_1428	0.51	+0.7
1,617,482	+		Psyr_1428	0.52	+1.3
1,617,492	+		Psyr_1428	0.52	+0.9
1,617,493	-		Psyr_1428	0.52	+2.9
1,617,493	-		Psyr_1428	0.52	+0.2
1,617,493	-		Psyr_1428	0.52	-0.4
1,617,493	-		Psyr_1428	0.52	-1.1
1,617,493	-		Psyr_1428	0.52	-0.5
1,617,493	-		Psyr_1428	0.52	+2.2
1,617,503	+		Psyr_1428	0.53	+0.5
1,617,504	-		Psyr_1428	0.53	+0.3
1,617,504	-		Psyr_1428	0.53	+1.9
1,617,504	-		Psyr_1428	0.53	-0.1
1,617,504	-		Psyr_1428	0.53	+1.0
1,617,504	-		Psyr_1428	0.53	+0.9
1,617,530	+		Psyr_1428	0.55	+0.6
1,617,530	+		Psyr_1428	0.55	+0.2
1,617,531	-		Psyr_1428	0.55	-0.5
1,617,531	-		Psyr_1428	0.55	+1.2
1,617,531	-		Psyr_1428	0.55	-0.1
1,617,531	-		Psyr_1428	0.55	-1.6
1,617,632	+		Psyr_1428	0.63	-1.7
1,617,633	-		Psyr_1428	0.63	+0.3
1,617,772	+		Psyr_1428	0.73	+2.5
1,617,772	+		Psyr_1428	0.73	-0.3
1,617,810	+		Psyr_1428	0.76	-0.8
1,617,811	-		Psyr_1428	0.76	-0.2
1,617,911	+		Psyr_1428	0.83	-0.8
1,617,911	+		Psyr_1428	0.83	+0.9
1,617,912	-		Psyr_1428	0.83	-2.9
1,617,912	-		Psyr_1428	0.83	-0.2
1,617,965	+		Psyr_1428	0.87	+1.3
1,617,966	-		Psyr_1428	0.87	+1.9
1,618,019	-				+0.2
1,618,019	-				+0.5
1,618,119	-				+0.1
1,618,119	-				-1.7
1,618,142	+				+0.3
1,618,142	+				+0.7
1,618,142	+				+0.5
1,618,143	-				+0.9
1,618,143	-				+0.3
1,618,143	-				+0.8
1,618,143	-				+0.2
1,618,177	+				+0.3
1,618,177	+				+1.1
1,618,286	+		Psyr_1429	0.13	+0.2
1,618,287	-		Psyr_1429	0.13	-0.1
1,618,330	+		Psyr_1429	0.18	+0.0
1,618,407	+		Psyr_1429	0.26	-0.7
1,618,408	-		Psyr_1429	0.26	+0.9
1,618,476	+		Psyr_1429	0.33	-1.1
1,618,476	+		Psyr_1429	0.33	-1.4
1,618,476	+		Psyr_1429	0.33	+0.1
1,618,477	-		Psyr_1429	0.33	+1.2
1,618,477	-		Psyr_1429	0.33	+0.9
1,618,477	-		Psyr_1429	0.33	+0.7
1,618,477	-		Psyr_1429	0.33	+0.5
1,618,477	-		Psyr_1429	0.33	-0.8
1,618,513	-		Psyr_1429	0.37	+0.3
1,618,513	-		Psyr_1429	0.37	+1.5
1,618,585	-		Psyr_1429	0.45	+0.8
1,618,585	-		Psyr_1429	0.45	+2.5
1,618,650	+		Psyr_1429	0.52	-0.1
1,618,650	+		Psyr_1429	0.52	+1.3
1,618,650	+		Psyr_1429	0.52	+0.9
1,618,650	+		Psyr_1429	0.52	-0.9
1,618,651	-		Psyr_1429	0.52	-0.7
1,618,651	-		Psyr_1429	0.52	-0.1
1,618,651	-		Psyr_1429	0.52	+1.3
1,618,651	-		Psyr_1429	0.52	-0.2
1,618,700	-		Psyr_1429	0.57	-0.0
1,618,700	-		Psyr_1429	0.57	-0.1
1,618,728	-		Psyr_1429	0.60	-2.7
1,618,728	-		Psyr_1429	0.60	+0.2
1,618,759	+		Psyr_1429	0.63	+1.3
1,618,759	+		Psyr_1429	0.63	-0.3
1,618,760	-		Psyr_1429	0.64	+0.1
1,618,866	+		Psyr_1429	0.75	+0.8
1,618,866	+		Psyr_1429	0.75	+2.9
1,618,919	+		Psyr_1429	0.81	+1.0
1,618,919	+		Psyr_1429	0.81	+0.5
1,618,920	-		Psyr_1429	0.81	+1.2
1,618,920	-		Psyr_1429	0.81	+0.2
1,618,974	+		Psyr_1429	0.86	+1.8
1,618,974	+		Psyr_1429	0.86	+1.0
1,618,974	+		Psyr_1429	0.86	+2.0
1,618,975	-		Psyr_1429	0.86	-0.9
1,618,975	-		Psyr_1429	0.86	-0.5
1,618,975	-		Psyr_1429	0.86	+0.9
1,619,187	+		Psyr_1430	0.19	-1.1
1,619,187	+		Psyr_1430	0.19	-0.7
1,619,198	+		Psyr_1430	0.21	-0.1
1,619,198	+		Psyr_1430	0.21	-0.1
1,619,198	+		Psyr_1430	0.21	+0.9
1,619,199	-		Psyr_1430	0.21	-1.4
1,619,199	-		Psyr_1430	0.21	-0.1
1,619,199	-		Psyr_1430	0.21	-1.7
1,619,263	+		Psyr_1430	0.35	-3.7
1,619,263	+		Psyr_1430	0.35	-0.4
1,619,281	+		Psyr_1430	0.39	+0.5
1,619,282	-		Psyr_1430	0.39	-0.7
1,619,501	-		Psyr_1430	0.85	-1.3
1,619,501	-		Psyr_1430	0.85	-1.1
1,619,501	-		Psyr_1430	0.85	-0.2
1,619,572	+				-1.1
1,619,572	+				-1.3
1,619,572	+				+1.2
1,619,573	-				-0.4
1,619,579	+				-1.3
1,619,579	+				+1.8
1,619,718	+				+0.9
1,619,718	+				-0.4
1,619,719	-				+1.3
1,619,722	+				+0.5
1,619,746	+				-0.4
1,619,746	+				-1.6
1,619,753	-				-0.9
1,619,803	+				-2.4
1,619,804	-				+1.0
1,619,804	-				-0.1
1,619,860	+				-2.4
1,619,860	+				-1.5
1,619,860	+				+1.1
1,619,860	+				+0.2
1,619,860	+				-2.8
1,619,860	+				-0.1
1,619,860	+				+2.6
1,619,860	+				+0.3
1,619,860	+				-0.1
1,619,861	-				-2.1
1,619,861	-				-0.9
1,619,861	-				-2.1
1,619,861	-				-0.5
1,619,861	-				-0.1
1,619,913	-				-2.1
1,619,954	+				+0.2
1,619,954	+				-0.1
1,619,954	+				-4.0
1,619,954	+				+3.6
1,619,954	+				-0.2
1,619,954	+				-1.7
1,619,955	-				+0.6
1,619,955	-				+2.0
1,619,955	-				-0.5
1,619,955	-				+0.1
1,619,956	+				+1.2
1,619,986	-				-1.7
1,620,048	+				+0.1
1,620,065	+				-0.1
1,620,065	+				-0.8
1,620,066	-				+0.8
1,620,066	-				+1.5
1,620,066	-				-0.3
1,620,092	+				-0.9
1,620,101	-				+1.2