Experiment: 4-hydroxybutyric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1392 and Psyr_1393 are separated by 311 nucleotides Psyr_1393 and Psyr_1394 are separated by 333 nucleotides
Psyr_1392: Psyr_1392 - SSU ribosomal protein S12P methylthiotransferase, at 1,572,595 to 1,573,938
_1392
Psyr_1393: Psyr_1393 - conserved hypothetical protein, at 1,574,250 to 1,575,341
_1393
Psyr_1394: Psyr_1394 - potassium transporter, at 1,575,675 to 1,577,570
_1394
Position (kb)
1574
1575
1576 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1573.317 kb on - strand, within Psyr_1392 at 1573.408 kb on + strand, within Psyr_1392 at 1573.408 kb on + strand, within Psyr_1392 at 1573.408 kb on + strand, within Psyr_1392 at 1573.408 kb on + strand, within Psyr_1392 at 1573.408 kb on + strand, within Psyr_1392 at 1573.408 kb on + strand, within Psyr_1392 at 1573.408 kb on + strand, within Psyr_1392 at 1573.408 kb on + strand, within Psyr_1392 at 1573.408 kb on + strand, within Psyr_1392 at 1573.408 kb on + strand, within Psyr_1392 at 1573.409 kb on - strand, within Psyr_1392 at 1573.508 kb on + strand, within Psyr_1392 at 1573.616 kb on + strand, within Psyr_1392 at 1573.617 kb on - strand, within Psyr_1392 at 1573.808 kb on + strand at 1573.808 kb on + strand at 1573.808 kb on + strand at 1573.808 kb on + strand at 1573.809 kb on - strand at 1573.837 kb on - strand at 1573.837 kb on - strand at 1574.069 kb on + strand at 1574.069 kb on + strand at 1574.153 kb on + strand at 1574.153 kb on + strand at 1574.153 kb on + strand at 1574.153 kb on + strand at 1574.153 kb on + strand at 1574.154 kb on - strand at 1574.154 kb on - strand at 1574.314 kb on + strand at 1574.315 kb on - strand at 1574.315 kb on - strand at 1574.315 kb on - strand at 1574.315 kb on - strand at 1574.464 kb on - strand, within Psyr_1393 at 1574.467 kb on + strand, within Psyr_1393 at 1574.467 kb on + strand, within Psyr_1393 at 1574.467 kb on + strand, within Psyr_1393 at 1574.467 kb on + strand, within Psyr_1393 at 1574.468 kb on - strand, within Psyr_1393 at 1574.687 kb on - strand, within Psyr_1393 at 1574.689 kb on + strand, within Psyr_1393 at 1574.690 kb on - strand, within Psyr_1393 at 1574.690 kb on - strand, within Psyr_1393 at 1574.710 kb on - strand, within Psyr_1393 at 1574.719 kb on + strand, within Psyr_1393 at 1574.719 kb on + strand, within Psyr_1393 at 1574.720 kb on - strand, within Psyr_1393 at 1574.720 kb on - strand, within Psyr_1393 at 1575.030 kb on + strand, within Psyr_1393 at 1575.031 kb on - strand, within Psyr_1393 at 1575.139 kb on + strand, within Psyr_1393 at 1575.206 kb on + strand, within Psyr_1393 at 1575.206 kb on + strand, within Psyr_1393 at 1575.206 kb on + strand, within Psyr_1393 at 1575.206 kb on + strand, within Psyr_1393 at 1575.207 kb on - strand, within Psyr_1393 at 1575.214 kb on + strand, within Psyr_1393 at 1575.214 kb on + strand, within Psyr_1393 at 1575.214 kb on + strand, within Psyr_1393 at 1575.215 kb on - strand, within Psyr_1393 at 1575.215 kb on - strand, within Psyr_1393 at 1575.362 kb on + strand at 1575.362 kb on + strand at 1575.418 kb on + strand at 1575.418 kb on + strand at 1575.418 kb on + strand at 1575.419 kb on - strand at 1575.422 kb on + strand at 1575.422 kb on + strand at 1575.422 kb on + strand at 1575.423 kb on - strand at 1575.423 kb on - strand at 1575.459 kb on + strand at 1575.459 kb on + strand at 1575.459 kb on + strand at 1575.459 kb on + strand at 1575.459 kb on + strand at 1575.460 kb on - strand at 1575.460 kb on - strand at 1575.460 kb on - strand at 1575.460 kb on - strand at 1575.460 kb on - strand at 1575.460 kb on - strand at 1575.548 kb on - strand at 1575.548 kb on - strand at 1575.564 kb on + strand at 1575.670 kb on - strand at 1575.784 kb on - strand at 1575.784 kb on - strand at 1575.897 kb on + strand, within Psyr_1394 at 1575.897 kb on + strand, within Psyr_1394 at 1575.897 kb on + strand, within Psyr_1394 at 1575.897 kb on + strand, within Psyr_1394 at 1575.897 kb on + strand, within Psyr_1394 at 1575.897 kb on + strand, within Psyr_1394 at 1575.897 kb on + strand, within Psyr_1394 at 1575.897 kb on + strand, within Psyr_1394 at 1575.897 kb on + strand, within Psyr_1394 at 1575.898 kb on - strand, within Psyr_1394 at 1575.898 kb on - strand, within Psyr_1394 at 1575.898 kb on - strand at 1575.898 kb on - strand, within Psyr_1394 at 1575.898 kb on - strand, within Psyr_1394 at 1575.898 kb on - strand, within Psyr_1394 at 1575.898 kb on - strand, within Psyr_1394 at 1575.898 kb on - strand, within Psyr_1394 at 1575.898 kb on - strand, within Psyr_1394 at 1575.898 kb on - strand, within Psyr_1394 at 1575.898 kb on - strand, within Psyr_1394 at 1576.012 kb on + strand, within Psyr_1394 at 1576.041 kb on + strand, within Psyr_1394 at 1576.042 kb on - strand, within Psyr_1394 at 1576.042 kb on - strand, within Psyr_1394 at 1576.042 kb on - strand, within Psyr_1394
Per-strain Table
Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C) remove 1,573,317 - Psyr_1392 0.54 +0.1 1,573,408 + Psyr_1392 0.60 +0.8 1,573,408 + Psyr_1392 0.60 -1.1 1,573,408 + Psyr_1392 0.60 -0.6 1,573,408 + Psyr_1392 0.60 -0.8 1,573,408 + Psyr_1392 0.60 -1.1 1,573,408 + Psyr_1392 0.60 -2.2 1,573,408 + Psyr_1392 0.60 -0.8 1,573,408 + Psyr_1392 0.60 +0.4 1,573,408 + Psyr_1392 0.60 -0.5 1,573,408 + Psyr_1392 0.60 +1.2 1,573,409 - Psyr_1392 0.61 +0.0 1,573,508 + Psyr_1392 0.68 -0.2 1,573,616 + Psyr_1392 0.76 +0.1 1,573,617 - Psyr_1392 0.76 +0.9 1,573,808 + -0.1 1,573,808 + -0.8 1,573,808 + -0.4 1,573,808 + +0.2 1,573,809 - -0.5 1,573,837 - -1.1 1,573,837 - +0.2 1,574,069 + -0.1 1,574,069 + -0.2 1,574,153 + +0.4 1,574,153 + +0.3 1,574,153 + +1.4 1,574,153 + +0.8 1,574,153 + +0.4 1,574,154 - +0.3 1,574,154 - +0.7 1,574,314 + -2.5 1,574,315 - +0.1 1,574,315 - -0.3 1,574,315 - -0.6 1,574,315 - -0.7 1,574,464 - Psyr_1393 0.20 +2.5 1,574,467 + Psyr_1393 0.20 +1.1 1,574,467 + Psyr_1393 0.20 +0.9 1,574,467 + Psyr_1393 0.20 -0.3 1,574,467 + Psyr_1393 0.20 +0.7 1,574,468 - Psyr_1393 0.20 +0.9 1,574,687 - Psyr_1393 0.40 +0.7 1,574,689 + Psyr_1393 0.40 -0.1 1,574,690 - Psyr_1393 0.40 +1.9 1,574,690 - Psyr_1393 0.40 -1.2 1,574,710 - Psyr_1393 0.42 +1.2 1,574,719 + Psyr_1393 0.43 +0.5 1,574,719 + Psyr_1393 0.43 +0.7 1,574,720 - Psyr_1393 0.43 +0.9 1,574,720 - Psyr_1393 0.43 -0.6 1,575,030 + Psyr_1393 0.71 +0.9 1,575,031 - Psyr_1393 0.72 +0.8 1,575,139 + Psyr_1393 0.81 +0.2 1,575,206 + Psyr_1393 0.88 +1.1 1,575,206 + Psyr_1393 0.88 +0.5 1,575,206 + Psyr_1393 0.88 -0.2 1,575,206 + Psyr_1393 0.88 +1.4 1,575,207 - Psyr_1393 0.88 -1.7 1,575,214 + Psyr_1393 0.88 +0.2 1,575,214 + Psyr_1393 0.88 +0.7 1,575,214 + Psyr_1393 0.88 -0.1 1,575,215 - Psyr_1393 0.88 +0.7 1,575,215 - Psyr_1393 0.88 -0.6 1,575,362 + +0.6 1,575,362 + +0.8 1,575,418 + +0.7 1,575,418 + +0.7 1,575,418 + +1.8 1,575,419 - +1.9 1,575,422 + -0.1 1,575,422 + -1.2 1,575,422 + +0.8 1,575,423 - +0.3 1,575,423 - -0.5 1,575,459 + +1.3 1,575,459 + -0.1 1,575,459 + +0.9 1,575,459 + +2.2 1,575,459 + +0.4 1,575,460 - +1.3 1,575,460 - -0.9 1,575,460 - -1.1 1,575,460 - +1.4 1,575,460 - +0.2 1,575,460 - -0.6 1,575,548 - -1.7 1,575,548 - +0.4 1,575,564 + +0.2 1,575,670 - +2.0 1,575,784 - -0.8 1,575,784 - -0.5 1,575,897 + Psyr_1394 0.12 -0.8 1,575,897 + Psyr_1394 0.12 +0.0 1,575,897 + Psyr_1394 0.12 -0.1 1,575,897 + Psyr_1394 0.12 +0.4 1,575,897 + Psyr_1394 0.12 -0.1 1,575,897 + Psyr_1394 0.12 -1.4 1,575,897 + Psyr_1394 0.12 +0.6 1,575,897 + Psyr_1394 0.12 +0.9 1,575,897 + Psyr_1394 0.12 +0.8 1,575,898 - Psyr_1394 0.12 +1.9 1,575,898 - Psyr_1394 0.12 +1.9 1,575,898 - -1.1 1,575,898 - Psyr_1394 0.12 -0.1 1,575,898 - Psyr_1394 0.12 +0.2 1,575,898 - Psyr_1394 0.12 +0.5 1,575,898 - Psyr_1394 0.12 +0.9 1,575,898 - Psyr_1394 0.12 +1.7 1,575,898 - Psyr_1394 0.12 -0.2 1,575,898 - Psyr_1394 0.12 -0.1 1,575,898 - Psyr_1394 0.12 +0.5 1,576,012 + Psyr_1394 0.18 +1.1 1,576,041 + Psyr_1394 0.19 -2.1 1,576,042 - Psyr_1394 0.19 +2.6 1,576,042 - Psyr_1394 0.19 +0.2 1,576,042 - Psyr_1394 0.19 -2.7
Or see this region's nucleotide sequence