Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1393

Experiment: 4-hydroxybutyric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1392 and Psyr_1393 are separated by 311 nucleotidesPsyr_1393 and Psyr_1394 are separated by 333 nucleotides Psyr_1392: Psyr_1392 - SSU ribosomal protein S12P methylthiotransferase, at 1,572,595 to 1,573,938 _1392 Psyr_1393: Psyr_1393 - conserved hypothetical protein, at 1,574,250 to 1,575,341 _1393 Psyr_1394: Psyr_1394 - potassium transporter, at 1,575,675 to 1,577,570 _1394 Position (kb) 1574 1575 1576Strain fitness (log2 ratio) -2 -1 0 1 2at 1573.317 kb on - strand, within Psyr_1392at 1573.408 kb on + strand, within Psyr_1392at 1573.408 kb on + strand, within Psyr_1392at 1573.408 kb on + strand, within Psyr_1392at 1573.408 kb on + strand, within Psyr_1392at 1573.408 kb on + strand, within Psyr_1392at 1573.408 kb on + strand, within Psyr_1392at 1573.408 kb on + strand, within Psyr_1392at 1573.408 kb on + strand, within Psyr_1392at 1573.408 kb on + strand, within Psyr_1392at 1573.408 kb on + strand, within Psyr_1392at 1573.409 kb on - strand, within Psyr_1392at 1573.508 kb on + strand, within Psyr_1392at 1573.616 kb on + strand, within Psyr_1392at 1573.617 kb on - strand, within Psyr_1392at 1573.808 kb on + strandat 1573.808 kb on + strandat 1573.808 kb on + strandat 1573.808 kb on + strandat 1573.809 kb on - strandat 1573.837 kb on - strandat 1573.837 kb on - strandat 1574.069 kb on + strandat 1574.069 kb on + strandat 1574.153 kb on + strandat 1574.153 kb on + strandat 1574.153 kb on + strandat 1574.153 kb on + strandat 1574.153 kb on + strandat 1574.154 kb on - strandat 1574.154 kb on - strandat 1574.314 kb on + strandat 1574.315 kb on - strandat 1574.315 kb on - strandat 1574.315 kb on - strandat 1574.315 kb on - strandat 1574.464 kb on - strand, within Psyr_1393at 1574.467 kb on + strand, within Psyr_1393at 1574.467 kb on + strand, within Psyr_1393at 1574.467 kb on + strand, within Psyr_1393at 1574.467 kb on + strand, within Psyr_1393at 1574.468 kb on - strand, within Psyr_1393at 1574.687 kb on - strand, within Psyr_1393at 1574.689 kb on + strand, within Psyr_1393at 1574.690 kb on - strand, within Psyr_1393at 1574.690 kb on - strand, within Psyr_1393at 1574.710 kb on - strand, within Psyr_1393at 1574.719 kb on + strand, within Psyr_1393at 1574.719 kb on + strand, within Psyr_1393at 1574.720 kb on - strand, within Psyr_1393at 1574.720 kb on - strand, within Psyr_1393at 1575.030 kb on + strand, within Psyr_1393at 1575.031 kb on - strand, within Psyr_1393at 1575.139 kb on + strand, within Psyr_1393at 1575.206 kb on + strand, within Psyr_1393at 1575.206 kb on + strand, within Psyr_1393at 1575.206 kb on + strand, within Psyr_1393at 1575.206 kb on + strand, within Psyr_1393at 1575.207 kb on - strand, within Psyr_1393at 1575.214 kb on + strand, within Psyr_1393at 1575.214 kb on + strand, within Psyr_1393at 1575.214 kb on + strand, within Psyr_1393at 1575.215 kb on - strand, within Psyr_1393at 1575.215 kb on - strand, within Psyr_1393at 1575.362 kb on + strandat 1575.362 kb on + strandat 1575.418 kb on + strandat 1575.418 kb on + strandat 1575.418 kb on + strandat 1575.419 kb on - strandat 1575.422 kb on + strandat 1575.422 kb on + strandat 1575.422 kb on + strandat 1575.423 kb on - strandat 1575.423 kb on - strandat 1575.459 kb on + strandat 1575.459 kb on + strandat 1575.459 kb on + strandat 1575.459 kb on + strandat 1575.459 kb on + strandat 1575.460 kb on - strandat 1575.460 kb on - strandat 1575.460 kb on - strandat 1575.460 kb on - strandat 1575.460 kb on - strandat 1575.460 kb on - strandat 1575.548 kb on - strandat 1575.548 kb on - strandat 1575.564 kb on + strandat 1575.670 kb on - strandat 1575.784 kb on - strandat 1575.784 kb on - strandat 1575.897 kb on + strand, within Psyr_1394at 1575.897 kb on + strand, within Psyr_1394at 1575.897 kb on + strand, within Psyr_1394at 1575.897 kb on + strand, within Psyr_1394at 1575.897 kb on + strand, within Psyr_1394at 1575.897 kb on + strand, within Psyr_1394at 1575.897 kb on + strand, within Psyr_1394at 1575.897 kb on + strand, within Psyr_1394at 1575.897 kb on + strand, within Psyr_1394at 1575.898 kb on - strand, within Psyr_1394at 1575.898 kb on - strand, within Psyr_1394at 1575.898 kb on - strandat 1575.898 kb on - strand, within Psyr_1394at 1575.898 kb on - strand, within Psyr_1394at 1575.898 kb on - strand, within Psyr_1394at 1575.898 kb on - strand, within Psyr_1394at 1575.898 kb on - strand, within Psyr_1394at 1575.898 kb on - strand, within Psyr_1394at 1575.898 kb on - strand, within Psyr_1394at 1575.898 kb on - strand, within Psyr_1394at 1576.012 kb on + strand, within Psyr_1394at 1576.041 kb on + strand, within Psyr_1394at 1576.042 kb on - strand, within Psyr_1394at 1576.042 kb on - strand, within Psyr_1394at 1576.042 kb on - strand, within Psyr_1394

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C)
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1,573,317 - Psyr_1392 0.54 +0.1
1,573,408 + Psyr_1392 0.60 +0.8
1,573,408 + Psyr_1392 0.60 -1.1
1,573,408 + Psyr_1392 0.60 -0.6
1,573,408 + Psyr_1392 0.60 -0.8
1,573,408 + Psyr_1392 0.60 -1.1
1,573,408 + Psyr_1392 0.60 -2.2
1,573,408 + Psyr_1392 0.60 -0.8
1,573,408 + Psyr_1392 0.60 +0.4
1,573,408 + Psyr_1392 0.60 -0.5
1,573,408 + Psyr_1392 0.60 +1.2
1,573,409 - Psyr_1392 0.61 +0.0
1,573,508 + Psyr_1392 0.68 -0.2
1,573,616 + Psyr_1392 0.76 +0.1
1,573,617 - Psyr_1392 0.76 +0.9
1,573,808 + -0.1
1,573,808 + -0.8
1,573,808 + -0.4
1,573,808 + +0.2
1,573,809 - -0.5
1,573,837 - -1.1
1,573,837 - +0.2
1,574,069 + -0.1
1,574,069 + -0.2
1,574,153 + +0.4
1,574,153 + +0.3
1,574,153 + +1.4
1,574,153 + +0.8
1,574,153 + +0.4
1,574,154 - +0.3
1,574,154 - +0.7
1,574,314 + -2.5
1,574,315 - +0.1
1,574,315 - -0.3
1,574,315 - -0.6
1,574,315 - -0.7
1,574,464 - Psyr_1393 0.20 +2.5
1,574,467 + Psyr_1393 0.20 +1.1
1,574,467 + Psyr_1393 0.20 +0.9
1,574,467 + Psyr_1393 0.20 -0.3
1,574,467 + Psyr_1393 0.20 +0.7
1,574,468 - Psyr_1393 0.20 +0.9
1,574,687 - Psyr_1393 0.40 +0.7
1,574,689 + Psyr_1393 0.40 -0.1
1,574,690 - Psyr_1393 0.40 +1.9
1,574,690 - Psyr_1393 0.40 -1.2
1,574,710 - Psyr_1393 0.42 +1.2
1,574,719 + Psyr_1393 0.43 +0.5
1,574,719 + Psyr_1393 0.43 +0.7
1,574,720 - Psyr_1393 0.43 +0.9
1,574,720 - Psyr_1393 0.43 -0.6
1,575,030 + Psyr_1393 0.71 +0.9
1,575,031 - Psyr_1393 0.72 +0.8
1,575,139 + Psyr_1393 0.81 +0.2
1,575,206 + Psyr_1393 0.88 +1.1
1,575,206 + Psyr_1393 0.88 +0.5
1,575,206 + Psyr_1393 0.88 -0.2
1,575,206 + Psyr_1393 0.88 +1.4
1,575,207 - Psyr_1393 0.88 -1.7
1,575,214 + Psyr_1393 0.88 +0.2
1,575,214 + Psyr_1393 0.88 +0.7
1,575,214 + Psyr_1393 0.88 -0.1
1,575,215 - Psyr_1393 0.88 +0.7
1,575,215 - Psyr_1393 0.88 -0.6
1,575,362 + +0.6
1,575,362 + +0.8
1,575,418 + +0.7
1,575,418 + +0.7
1,575,418 + +1.8
1,575,419 - +1.9
1,575,422 + -0.1
1,575,422 + -1.2
1,575,422 + +0.8
1,575,423 - +0.3
1,575,423 - -0.5
1,575,459 + +1.3
1,575,459 + -0.1
1,575,459 + +0.9
1,575,459 + +2.2
1,575,459 + +0.4
1,575,460 - +1.3
1,575,460 - -0.9
1,575,460 - -1.1
1,575,460 - +1.4
1,575,460 - +0.2
1,575,460 - -0.6
1,575,548 - -1.7
1,575,548 - +0.4
1,575,564 + +0.2
1,575,670 - +2.0
1,575,784 - -0.8
1,575,784 - -0.5
1,575,897 + Psyr_1394 0.12 -0.8
1,575,897 + Psyr_1394 0.12 +0.0
1,575,897 + Psyr_1394 0.12 -0.1
1,575,897 + Psyr_1394 0.12 +0.4
1,575,897 + Psyr_1394 0.12 -0.1
1,575,897 + Psyr_1394 0.12 -1.4
1,575,897 + Psyr_1394 0.12 +0.6
1,575,897 + Psyr_1394 0.12 +0.9
1,575,897 + Psyr_1394 0.12 +0.8
1,575,898 - Psyr_1394 0.12 +1.9
1,575,898 - Psyr_1394 0.12 +1.9
1,575,898 - -1.1
1,575,898 - Psyr_1394 0.12 -0.1
1,575,898 - Psyr_1394 0.12 +0.2
1,575,898 - Psyr_1394 0.12 +0.5
1,575,898 - Psyr_1394 0.12 +0.9
1,575,898 - Psyr_1394 0.12 +1.7
1,575,898 - Psyr_1394 0.12 -0.2
1,575,898 - Psyr_1394 0.12 -0.1
1,575,898 - Psyr_1394 0.12 +0.5
1,576,012 + Psyr_1394 0.18 +1.1
1,576,041 + Psyr_1394 0.19 -2.1
1,576,042 - Psyr_1394 0.19 +2.6
1,576,042 - Psyr_1394 0.19 +0.2
1,576,042 - Psyr_1394 0.19 -2.7

Or see this region's nucleotide sequence