Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1254

Experiment: 4-hydroxybutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-hydroxybutyric (C)
1,409,482	+		Psyr_1253	0.15	-2.0
1,409,483	-		Psyr_1253	0.15	-0.5
1,409,545	+		Psyr_1253	0.20	+0.5
1,409,545	+		Psyr_1253	0.20	-0.0
1,409,546	-		Psyr_1253	0.20	-1.6
1,409,668	+		Psyr_1253	0.31	-0.8
1,409,668	+		Psyr_1253	0.31	+1.5
1,409,669	-		Psyr_1253	0.31	-2.0
1,409,677	+		Psyr_1253	0.32	-1.6
1,409,678	-		Psyr_1253	0.32	+0.9
1,409,887	+		Psyr_1253	0.50	-1.0
1,409,887	+		Psyr_1253	0.50	+0.8
1,409,887	+		Psyr_1253	0.50	-0.2
1,409,887	+		Psyr_1253	0.50	-1.6
1,409,887	+		Psyr_1253	0.50	-0.3
1,409,887	+		Psyr_1253	0.50	-3.6
1,409,888	-		Psyr_1253	0.50	+0.1
1,409,888	-		Psyr_1253	0.50	+0.4
1,409,888	-		Psyr_1253	0.50	+0.7
1,409,888	-		Psyr_1253	0.50	-2.4
1,409,888	-		Psyr_1253	0.50	-0.7
1,409,888	-		Psyr_1253	0.50	-1.0
1,409,888	-		Psyr_1253	0.50	-1.0
1,409,908	+		Psyr_1253	0.52	-0.6
1,409,908	+		Psyr_1253	0.52	-1.4
1,409,909	-		Psyr_1253	0.52	+0.3
1,409,909	-		Psyr_1253	0.52	+0.5
1,409,909	-		Psyr_1253	0.52	+1.5
1,409,909	-		Psyr_1253	0.52	-0.5
1,409,909	-		Psyr_1253	0.52	+0.4
1,409,909	-		Psyr_1253	0.52	+0.5
1,409,968	+		Psyr_1253	0.57	+1.5
1,409,969	-		Psyr_1253	0.57	-0.1
1,410,007	+		Psyr_1253	0.60	+1.7
1,410,007	+		Psyr_1253	0.60	+2.0
1,410,008	-		Psyr_1253	0.60	+2.8
1,410,008	-		Psyr_1253	0.60	-0.5
1,410,008	-		Psyr_1253	0.60	+0.2
1,410,008	-		Psyr_1253	0.60	-1.2
1,410,035	-		Psyr_1253	0.63	-0.0
1,410,035	-		Psyr_1253	0.63	-0.1
1,410,085	+		Psyr_1253	0.67	-0.0
1,410,085	+		Psyr_1253	0.67	+0.3
1,410,085	+		Psyr_1253	0.67	-0.0
1,410,085	+		Psyr_1253	0.67	-0.5
1,410,085	+		Psyr_1253	0.67	-0.3
1,410,085	+		Psyr_1253	0.67	-0.4
1,410,086	-		Psyr_1253	0.67	-0.3
1,410,086	-		Psyr_1253	0.67	+0.4
1,410,118	+		Psyr_1253	0.70	-1.6
1,410,118	+		Psyr_1253	0.70	-2.4
1,410,178	+		Psyr_1253	0.75	+1.1
1,410,178	+		Psyr_1253	0.75	-1.3
1,410,179	-		Psyr_1253	0.75	-0.8
1,410,253	+		Psyr_1253	0.82	-0.0
1,410,253	+		Psyr_1253	0.82	+1.8
1,410,254	-		Psyr_1253	0.82	-0.4
1,410,254	-		Psyr_1253	0.82	-0.3
1,410,271	+		Psyr_1253	0.83	+0.9
1,410,271	+		Psyr_1253	0.83	-0.0
1,410,365	-				-0.4
1,410,449	+				+0.3
1,410,449	+				+1.0
1,410,450	-				-0.6
1,410,450	-				-1.3
1,410,450	-				-0.3
1,410,460	+				-3.4
1,410,460	+				-0.0
1,410,460	+				-3.0
1,410,461	-				-0.1
1,410,461	-				-1.0
1,410,550	+		Psyr_1254	0.13	-0.7
1,410,653	+		Psyr_1254	0.26	-2.4
1,410,653	+		Psyr_1254	0.26	-2.6
1,410,653	+		Psyr_1254	0.26	-3.0
1,410,653	+		Psyr_1254	0.26	-2.0
1,410,653	+		Psyr_1254	0.26	-0.4
1,410,653	+		Psyr_1254	0.26	-0.0
1,410,654	-		Psyr_1254	0.26	-0.5
1,410,654	-		Psyr_1254	0.26	-2.6
1,410,654	-		Psyr_1254	0.26	-0.5
1,410,654	-		Psyr_1254	0.26	-1.8
1,410,654	-		Psyr_1254	0.26	-0.6
1,410,661	+		Psyr_1254	0.27	-1.5
1,410,662	-		Psyr_1254	0.27	-1.1
1,410,662	-		Psyr_1254	0.27	-2.8
1,410,667	+		Psyr_1254	0.27	-2.6
1,410,667	+		Psyr_1254	0.27	-1.6
1,410,668	-		Psyr_1254	0.28	-4.3
1,410,687	-		Psyr_1254	0.30	-0.4
1,410,787	-		Psyr_1254	0.43	-1.6
1,410,831	+		Psyr_1254	0.48	-3.6
1,410,831	+		Psyr_1254	0.48	-3.2
1,410,831	+		Psyr_1254	0.48	-0.0
1,410,832	-		Psyr_1254	0.48	-1.2
1,410,897	+		Psyr_1254	0.56	-1.4
1,410,898	-		Psyr_1254	0.57	-2.3
1,410,898	-		Psyr_1254	0.57	-1.6
1,410,954	+		Psyr_1254	0.64	-1.6
1,410,954	+		Psyr_1254	0.64	-2.8
1,410,955	-		Psyr_1254	0.64	-1.8
1,411,032	+		Psyr_1254	0.73	-0.6
1,411,032	+		Psyr_1254	0.73	-1.0
1,411,032	+		Psyr_1254	0.73	-3.2
1,411,032	+		Psyr_1254	0.73	-3.0
1,411,032	+		Psyr_1254	0.73	-0.0
1,411,032	+		Psyr_1254	0.73	-0.0
1,411,032	+		Psyr_1254	0.73	-0.6
1,411,032	+		Psyr_1254	0.73	-2.9
1,411,032	+		Psyr_1254	0.73	-3.7
1,411,033	-		Psyr_1254	0.74	-1.0
1,411,033	-		Psyr_1254	0.74	-1.4
1,411,033	-		Psyr_1254	0.74	-2.3
1,411,033	-		Psyr_1254	0.74	-3.4
1,411,033	-		Psyr_1254	0.74	-1.4
1,411,033	-		Psyr_1254	0.74	-0.8
1,411,033	-		Psyr_1254	0.74	-2.4
1,411,033	-		Psyr_1254	0.74	-0.4
1,411,033	-		Psyr_1254	0.74	-1.0
1,411,033	-		Psyr_1254	0.74	-1.6
1,411,033	-		Psyr_1254	0.74	-1.6
1,411,033	-		Psyr_1254	0.74	-2.5
1,411,033	-		Psyr_1254	0.74	-2.0
1,411,033	-		Psyr_1254	0.74	-2.0
1,411,080	+		Psyr_1254	0.80	-2.8
1,411,080	+		Psyr_1254	0.80	-1.0
1,411,081	-		Psyr_1254	0.80	-2.9
1,411,229	+				-1.0
1,411,229	+				-2.4
1,411,229	+				-3.0
1,411,230	-				-1.0
1,411,230	-				-0.0
1,411,230	-				-1.0
1,411,233	-				-3.7
1,411,233	-				-0.5
1,411,233	-				-0.0
1,411,239	+				-0.2
1,411,273	-				-0.2
1,411,306	+				+1.0
1,411,306	+				+2.3
1,411,307	-				-1.7
1,411,315	+				+1.5
1,411,315	+				-0.7
1,411,315	+				-0.0
1,411,315	+				+1.5
1,411,315	+				-0.8
1,411,315	+				-1.0
1,411,315	+				-1.6
1,411,315	+				+0.5
1,411,316	-				-0.0
1,411,316	-				-2.6
1,411,316	-				-1.6
1,411,316	-				+1.4
1,411,316	-				+0.2
1,411,316	-				-0.5
1,411,316	-				-3.5
1,411,316	-				-1.0
1,411,316	-				-0.0
1,411,316	-				+0.5
1,411,316	-				+1.0
1,411,316	-				-3.2
1,411,316	-				-0.6
1,411,316	-				+0.2
1,411,316	-				+0.5
1,411,316	-				+1.0
1,411,335	-				-1.0
1,411,335	-				+1.2
1,411,335	-				+0.2
1,411,361	-				-1.3
1,411,536	+		Psyr_1255	0.42	+0.3
1,411,536	+		Psyr_1255	0.42	-1.0
1,411,536	+		Psyr_1255	0.42	+2.0
1,411,536	+		Psyr_1255	0.42	+0.6
1,411,537	-		Psyr_1255	0.42	+2.0
1,411,537	-		Psyr_1255	0.42	+0.7
1,411,537	-		Psyr_1255	0.42	-1.6
1,411,895	+				-1.6
1,411,895	+				+0.2
1,411,895	+				+1.5
1,411,895	+				-0.5
1,411,895	+				-1.0
1,411,895	+				-1.0
1,411,895	+				-1.6
1,411,895	+				-1.6
1,411,895	+				-0.0
1,411,895	+				+0.3
1,411,896	-				-0.9
1,411,896	-				-0.0
1,411,896	-				+1.5
1,411,896	-				-1.2
1,411,899	+				-0.2
1,411,899	+				-0.1
1,411,899	+				-1.2
1,411,899	+				-1.6
1,411,900	-				+0.2
1,411,900	-				-0.2
1,411,900	-				-0.6
1,411,915	+				-0.5
1,411,915	+				+0.8
1,411,915	+				+1.5
1,411,916	-				-1.3
1,411,916	-				-1.3
1,411,917	+				+1.0
1,411,917	+				-1.2
1,411,917	+				+0.2
1,411,917	+				-0.0
1,411,917	+				+1.0
1,411,917	+				-2.3
1,411,918	-				-2.0
1,411,918	-				-0.8
1,411,918	-				-0.7
1,411,918	-				-0.0
1,411,918	-				-1.4
1,411,918	-				-0.0
1,411,918	-				-2.4
1,411,918	-				+1.5
1,411,918	-				-0.4
1,411,918	-				-0.0
1,411,992	+		Psyr_1256	0.15	+0.8
1,411,992	+		Psyr_1256	0.15	-0.0
1,411,992	+		Psyr_1256	0.15	+0.3
1,411,992	+		Psyr_1256	0.15	-0.5
1,411,992	+		Psyr_1256	0.15	-2.0
1,411,993	-		Psyr_1256	0.15	+0.2
1,411,993	-		Psyr_1256	0.15	-0.0
1,411,993	-		Psyr_1256	0.15	+0.1
1,411,993	-		Psyr_1256	0.15	+0.4
1,412,016	+		Psyr_1256	0.18	+0.4
1,412,016	+		Psyr_1256	0.18	-1.6
1,412,017	-		Psyr_1256	0.18	-0.6
1,412,033	+		Psyr_1256	0.20	-0.5
1,412,033	+		Psyr_1256	0.20	-0.0
1,412,033	+		Psyr_1256	0.20	+0.5
1,412,034	-		Psyr_1256	0.20	-0.5
1,412,034	-		Psyr_1256	0.20	-0.5
1,412,034	-		Psyr_1256	0.20	-0.2
1,412,034	-		Psyr_1256	0.20	-1.2
1,412,034	-		Psyr_1256	0.20	-0.0
1,412,034	-		Psyr_1256	0.20	+1.7
1,412,034	-		Psyr_1256	0.20	-2.6
1,412,034	-		Psyr_1256	0.20	+2.0
1,412,034	-		Psyr_1256	0.20	+0.8
1,412,034	-		Psyr_1256	0.20	-0.6
1,412,094	+		Psyr_1256	0.27	+1.5
1,412,095	-		Psyr_1256	0.27	-2.0
1,412,174	-		Psyr_1256	0.36	-1.0
1,412,199	+		Psyr_1256	0.39	+1.0
1,412,200	-		Psyr_1256	0.39	-0.0