Experiment: 4-hydroxybutyric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1096 and Psyr_1097 are separated by 10 nucleotides Psyr_1097 and Psyr_1098 are separated by 325 nucleotides
Psyr_1096: Psyr_1096 - glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit, at 1,238,600 to 1,241,464
_1096
Psyr_1097: Psyr_1097 - glycine cleavage system H protein, at 1,241,475 to 1,241,858
_1097
Psyr_1098: Psyr_1098 - response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s), at 1,242,184 to 1,244,301
_1098
Position (kb)
1241
1242 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1240.495 kb on + strand, within Psyr_1096 at 1240.495 kb on + strand, within Psyr_1096 at 1240.496 kb on - strand, within Psyr_1096 at 1240.611 kb on + strand, within Psyr_1096 at 1240.611 kb on + strand, within Psyr_1096 at 1240.612 kb on - strand, within Psyr_1096 at 1240.612 kb on - strand, within Psyr_1096 at 1240.673 kb on + strand, within Psyr_1096 at 1240.673 kb on + strand, within Psyr_1096 at 1240.833 kb on + strand, within Psyr_1096 at 1240.834 kb on - strand, within Psyr_1096 at 1240.903 kb on + strand, within Psyr_1096 at 1241.133 kb on + strand, within Psyr_1096 at 1241.199 kb on + strand at 1241.199 kb on + strand at 1241.199 kb on + strand at 1241.199 kb on + strand at 1241.199 kb on + strand at 1241.199 kb on + strand at 1241.199 kb on + strand at 1241.199 kb on + strand at 1241.199 kb on + strand at 1241.199 kb on + strand at 1241.200 kb on - strand at 1241.200 kb on - strand at 1241.200 kb on - strand at 1241.200 kb on - strand at 1241.200 kb on - strand at 1241.200 kb on - strand at 1241.200 kb on - strand at 1241.200 kb on - strand at 1241.200 kb on - strand at 1241.200 kb on - strand at 1241.200 kb on - strand at 1241.200 kb on - strand at 1241.200 kb on - strand at 1241.203 kb on - strand at 1241.203 kb on - strand at 1241.217 kb on + strand at 1241.217 kb on + strand at 1241.217 kb on + strand at 1241.217 kb on + strand at 1241.218 kb on - strand at 1241.218 kb on - strand at 1241.218 kb on - strand at 1241.719 kb on + strand, within Psyr_1097 at 1241.719 kb on + strand, within Psyr_1097 at 1241.720 kb on - strand, within Psyr_1097 at 1241.858 kb on + strand at 1241.858 kb on + strand at 1241.858 kb on + strand at 1241.859 kb on - strand at 1241.901 kb on + strand at 1241.901 kb on + strand at 1241.901 kb on + strand at 1241.902 kb on - strand at 1241.916 kb on - strand at 1241.916 kb on - strand at 1241.964 kb on + strand at 1242.024 kb on - strand at 1242.024 kb on - strand at 1242.024 kb on - strand at 1242.024 kb on - strand at 1242.033 kb on + strand at 1242.141 kb on - strand at 1242.151 kb on - strand at 1242.154 kb on - strand at 1242.257 kb on + strand at 1242.258 kb on - strand at 1242.444 kb on + strand, within Psyr_1098 at 1242.462 kb on - strand, within Psyr_1098 at 1242.504 kb on + strand, within Psyr_1098 at 1242.504 kb on + strand, within Psyr_1098 at 1242.805 kb on + strand, within Psyr_1098 at 1242.805 kb on + strand, within Psyr_1098 at 1242.806 kb on - strand, within Psyr_1098
Per-strain Table
Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C) remove 1,240,495 + Psyr_1096 0.66 -0.8 1,240,495 + Psyr_1096 0.66 -2.2 1,240,496 - Psyr_1096 0.66 +0.2 1,240,611 + Psyr_1096 0.70 -0.4 1,240,611 + Psyr_1096 0.70 +0.5 1,240,612 - Psyr_1096 0.70 +0.0 1,240,612 - Psyr_1096 0.70 -0.1 1,240,673 + Psyr_1096 0.72 +0.9 1,240,673 + Psyr_1096 0.72 -2.0 1,240,833 + Psyr_1096 0.78 -0.5 1,240,834 - Psyr_1096 0.78 -0.7 1,240,903 + Psyr_1096 0.80 -0.2 1,241,133 + Psyr_1096 0.88 -0.7 1,241,199 + -2.0 1,241,199 + -0.5 1,241,199 + -1.0 1,241,199 + -2.0 1,241,199 + +0.7 1,241,199 + +0.0 1,241,199 + +1.0 1,241,199 + -0.9 1,241,199 + +0.3 1,241,199 + +1.6 1,241,200 - -1.0 1,241,200 - +0.0 1,241,200 - -0.6 1,241,200 - -0.6 1,241,200 - +1.6 1,241,200 - -1.2 1,241,200 - -0.4 1,241,200 - -0.6 1,241,200 - -0.9 1,241,200 - +1.6 1,241,200 - -1.2 1,241,200 - +0.0 1,241,200 - +0.0 1,241,203 - +0.5 1,241,203 - +3.0 1,241,217 + +0.2 1,241,217 + -0.7 1,241,217 + +1.4 1,241,217 + +0.3 1,241,218 - -1.6 1,241,218 - +0.0 1,241,218 - +0.0 1,241,719 + Psyr_1097 0.64 +0.0 1,241,719 + Psyr_1097 0.64 -0.7 1,241,720 - Psyr_1097 0.64 +1.0 1,241,858 + -0.7 1,241,858 + +0.7 1,241,858 + -1.0 1,241,859 - +1.6 1,241,901 + -0.2 1,241,901 + +0.6 1,241,901 + +0.0 1,241,902 - +1.5 1,241,916 - -0.4 1,241,916 - -0.7 1,241,964 + -0.2 1,242,024 - +0.6 1,242,024 - -1.4 1,242,024 - -0.2 1,242,024 - -0.4 1,242,033 + -0.3 1,242,141 - -3.3 1,242,151 - -1.6 1,242,154 - -0.4 1,242,257 + -0.4 1,242,258 - -0.7 1,242,444 + Psyr_1098 0.12 +1.0 1,242,462 - Psyr_1098 0.13 -2.1 1,242,504 + Psyr_1098 0.15 +1.8 1,242,504 + Psyr_1098 0.15 -0.4 1,242,805 + Psyr_1098 0.29 -1.6 1,242,805 + Psyr_1098 0.29 -2.8 1,242,806 - Psyr_1098 0.29 -1.0
Or see this region's nucleotide sequence