Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1096

Experiment: 4-hydroxybutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-hydroxybutyric (C)
1,237,751	+		Psyr_1095	0.32	+0.0
1,237,853	-		Psyr_1095	0.41	-0.2
1,237,944	+		Psyr_1095	0.49	+1.2
1,237,945	-		Psyr_1095	0.49	-1.3
1,237,945	-		Psyr_1095	0.49	+0.4
1,237,962	+		Psyr_1095	0.50	-1.0
1,237,962	+		Psyr_1095	0.50	-3.2
1,237,962	+		Psyr_1095	0.50	+0.7
1,237,962	+		Psyr_1095	0.50	+0.0
1,237,963	-		Psyr_1095	0.51	+0.2
1,237,963	-		Psyr_1095	0.51	+0.3
1,238,418	+				-0.6
1,238,544	+				-0.4
1,238,613	+				-1.5
1,238,614	-				-0.6
1,238,691	+				+0.4
1,238,691	+				-1.0
1,238,691	+				-1.3
1,238,691	+				+0.7
1,238,692	-				-2.0
1,238,692	-				+1.8
1,238,692	-				-0.4
1,238,692	-				+0.4
1,238,692	-				-2.3
1,238,692	-				-0.2
1,238,722	-				+1.6
1,238,722	-				+2.3
1,238,742	+				-0.6
1,239,075	+		Psyr_1096	0.17	-0.6
1,239,114	+		Psyr_1096	0.18	+0.0
1,239,114	+		Psyr_1096	0.18	-0.2
1,239,114	+		Psyr_1096	0.18	-1.7
1,239,114	+		Psyr_1096	0.18	+0.0
1,239,114	+		Psyr_1096	0.18	+0.6
1,239,114	+		Psyr_1096	0.18	-0.9
1,239,114	+		Psyr_1096	0.18	-2.6
1,239,115	-		Psyr_1096	0.18	+0.0
1,239,115	-		Psyr_1096	0.18	+1.0
1,239,115	-		Psyr_1096	0.18	+0.7
1,239,115	-		Psyr_1096	0.18	-1.5
1,239,115	-		Psyr_1096	0.18	+0.4
1,239,115	-		Psyr_1096	0.18	-1.3
1,239,115	-		Psyr_1096	0.18	+0.5
1,239,115	-		Psyr_1096	0.18	-1.0
1,239,115	-				+1.3
1,239,115	-		Psyr_1096	0.18	-2.5
1,239,180	+		Psyr_1096	0.20	-2.9
1,239,180	+		Psyr_1096	0.20	+0.2
1,239,180	+		Psyr_1096	0.20	-0.6
1,239,180	+		Psyr_1096	0.20	-0.8
1,239,180	+		Psyr_1096	0.20	+0.1
1,239,180	+		Psyr_1096	0.20	+0.2
1,239,180	+		Psyr_1096	0.20	+0.7
1,239,180	+		Psyr_1096	0.20	+0.8
1,239,180	+		Psyr_1096	0.20	+0.0
1,239,180	+		Psyr_1096	0.20	+2.1
1,239,180	+		Psyr_1096	0.20	-1.7
1,239,180	+		Psyr_1096	0.20	+0.3
1,239,180	+		Psyr_1096	0.20	+1.2
1,239,180	+		Psyr_1096	0.20	-1.0
1,239,181	-		Psyr_1096	0.20	-3.0
1,239,181	-		Psyr_1096	0.20	-2.3
1,239,181	-		Psyr_1096	0.20	+0.8
1,239,181	-		Psyr_1096	0.20	+1.6
1,239,181	-		Psyr_1096	0.20	+0.8
1,239,181	-		Psyr_1096	0.20	-1.4
1,239,181	-		Psyr_1096	0.20	-0.4
1,239,181	-		Psyr_1096	0.20	+1.0
1,239,181	-		Psyr_1096	0.20	+0.8
1,239,181	-		Psyr_1096	0.20	-1.0
1,239,181	-		Psyr_1096	0.20	+0.6
1,239,433	+		Psyr_1096	0.29	-0.6
1,239,435	+		Psyr_1096	0.29	+1.1
1,239,435	+		Psyr_1096	0.29	+0.7
1,239,435	+		Psyr_1096	0.29	-1.6
1,239,435	+		Psyr_1096	0.29	+0.3
1,239,435	+		Psyr_1096	0.29	+0.2
1,239,436	-		Psyr_1096	0.29	-0.3
1,239,436	-		Psyr_1096	0.29	+0.0
1,239,436	-		Psyr_1096	0.29	+0.3
1,239,436	-		Psyr_1096	0.29	-2.2
1,239,436	-		Psyr_1096	0.29	+0.9
1,239,436	-		Psyr_1096	0.29	-0.8
1,239,436	-		Psyr_1096	0.29	+1.8
1,239,436	-		Psyr_1096	0.29	+2.0
1,239,436	-		Psyr_1096	0.29	+0.0
1,239,436	-		Psyr_1096	0.29	+0.0
1,239,514	-		Psyr_1096	0.32	+0.4
1,239,514	-		Psyr_1096	0.32	-0.7
1,240,416	+		Psyr_1096	0.63	+0.4
1,240,417	-		Psyr_1096	0.63	-1.8
1,240,425	+		Psyr_1096	0.64	-1.2
1,240,425	+		Psyr_1096	0.64	+0.4
1,240,425	+		Psyr_1096	0.64	+1.0
1,240,425	+		Psyr_1096	0.64	+0.0
1,240,425	+		Psyr_1096	0.64	-1.6
1,240,426	-		Psyr_1096	0.64	+0.6
1,240,426	-		Psyr_1096	0.64	+0.6
1,240,426	-		Psyr_1096	0.64	-1.6
1,240,426	-		Psyr_1096	0.64	-1.2
1,240,426	-		Psyr_1096	0.64	+0.7
1,240,495	+		Psyr_1096	0.66	-0.8
1,240,495	+		Psyr_1096	0.66	-2.2
1,240,496	-		Psyr_1096	0.66	+0.2
1,240,611	+		Psyr_1096	0.70	-0.4
1,240,611	+		Psyr_1096	0.70	+0.5
1,240,612	-		Psyr_1096	0.70	+0.0
1,240,612	-		Psyr_1096	0.70	-0.1
1,240,673	+		Psyr_1096	0.72	+0.9
1,240,673	+		Psyr_1096	0.72	-2.0
1,240,833	+		Psyr_1096	0.78	-0.5
1,240,834	-		Psyr_1096	0.78	-0.7
1,240,903	+		Psyr_1096	0.80	-0.2
1,241,133	+		Psyr_1096	0.88	-0.7
1,241,199	+				-2.0
1,241,199	+				-0.5
1,241,199	+				-1.0
1,241,199	+				-2.0
1,241,199	+				+0.7
1,241,199	+				+0.0
1,241,199	+				+1.0
1,241,199	+				-0.9
1,241,199	+				+0.3
1,241,199	+				+1.6
1,241,200	-				-1.0
1,241,200	-				+0.0
1,241,200	-				-0.6
1,241,200	-				-0.6
1,241,200	-				+1.6
1,241,200	-				-1.2
1,241,200	-				-0.4
1,241,200	-				-0.6
1,241,200	-				-0.9
1,241,200	-				+1.6
1,241,200	-				-1.2
1,241,200	-				+0.0
1,241,200	-				+0.0
1,241,203	-				+0.5
1,241,203	-				+3.0
1,241,217	+				+0.2
1,241,217	+				-0.7
1,241,217	+				+1.4
1,241,217	+				+0.3
1,241,218	-				-1.6
1,241,218	-				+0.0
1,241,218	-				+0.0
1,241,719	+		Psyr_1097	0.64	+0.0
1,241,719	+		Psyr_1097	0.64	-0.7
1,241,720	-		Psyr_1097	0.64	+1.0
1,241,858	+				-0.7
1,241,858	+				+0.7
1,241,858	+				-1.0
1,241,859	-				+1.6
1,241,901	+				-0.2
1,241,901	+				+0.6
1,241,901	+				+0.0
1,241,902	-				+1.5
1,241,916	-				-0.4
1,241,916	-				-0.7
1,241,964	+				-0.2
1,242,024	-				+0.6
1,242,024	-				-1.4
1,242,024	-				-0.2
1,242,024	-				-0.4
1,242,033	+				-0.3
1,242,141	-				-3.3
1,242,151	-				-1.6
1,242,154	-				-0.4
1,242,257	+				-0.4
1,242,258	-				-0.7
1,242,444	+		Psyr_1098	0.12	+1.0
1,242,462	-		Psyr_1098	0.13	-2.1