Experiment: 4-hydroxybutyric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1018 and Psyr_1019 are separated by 43 nucleotides Psyr_1019 and Psyr_1020 overlap by 1 nucleotides Psyr_1020 and Psyr_1021 are separated by 21 nucleotides Psyr_1021 and Psyr_1022 are separated by 234 nucleotides Psyr_1022 and Psyr_1023 are separated by 151 nucleotides
Psyr_1018: Psyr_1018 - Protein of unknown function DUF1244, at 1,151,268 to 1,151,567
_1018
Psyr_1019: Psyr_1019 - Dihydroneopterin aldolase, at 1,151,611 to 1,151,982
_1019
Psyr_1020: Psyr_1020 - GTP cyclohydrolase I, at 1,151,982 to 1,152,545
_1020
Psyr_1021: Psyr_1021 - Short-chain dehydrogenase/reductase SDR, at 1,152,567 to 1,153,277
_1021
Psyr_1022: Psyr_1022 - conserved hypothetical protein, at 1,153,512 to 1,154,078
_1022
Psyr_1023: Psyr_1023 - conserved hypothetical protein, at 1,154,230 to 1,154,835
_1023
Position (kb)
1152
1153
1154 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 1151.603 kb on + strand at 1151.604 kb on - strand at 1151.690 kb on + strand, within Psyr_1019 at 1151.690 kb on + strand, within Psyr_1019 at 1151.690 kb on + strand, within Psyr_1019 at 1151.690 kb on + strand, within Psyr_1019 at 1151.690 kb on + strand, within Psyr_1019 at 1151.690 kb on + strand, within Psyr_1019 at 1151.691 kb on - strand, within Psyr_1019 at 1151.691 kb on - strand, within Psyr_1019 at 1151.691 kb on - strand, within Psyr_1019 at 1151.691 kb on - strand, within Psyr_1019 at 1151.805 kb on - strand, within Psyr_1019 at 1151.805 kb on - strand, within Psyr_1019 at 1151.856 kb on - strand, within Psyr_1019 at 1151.856 kb on - strand, within Psyr_1019 at 1151.983 kb on + strand at 1152.065 kb on + strand, within Psyr_1020 at 1152.065 kb on + strand, within Psyr_1020 at 1152.065 kb on + strand, within Psyr_1020 at 1152.065 kb on + strand, within Psyr_1020 at 1152.065 kb on + strand, within Psyr_1020 at 1152.065 kb on + strand, within Psyr_1020 at 1152.065 kb on + strand, within Psyr_1020 at 1152.066 kb on - strand, within Psyr_1020 at 1152.066 kb on - strand, within Psyr_1020 at 1152.066 kb on - strand, within Psyr_1020 at 1152.066 kb on - strand, within Psyr_1020 at 1152.066 kb on - strand, within Psyr_1020 at 1152.066 kb on - strand, within Psyr_1020 at 1152.066 kb on - strand, within Psyr_1020 at 1152.066 kb on - strand, within Psyr_1020 at 1152.066 kb on - strand, within Psyr_1020 at 1152.066 kb on - strand, within Psyr_1020 at 1152.066 kb on - strand, within Psyr_1020 at 1152.066 kb on - strand, within Psyr_1020 at 1152.139 kb on - strand, within Psyr_1020 at 1152.139 kb on - strand, within Psyr_1020 at 1152.278 kb on - strand, within Psyr_1020 at 1152.278 kb on - strand, within Psyr_1020 at 1152.278 kb on - strand, within Psyr_1020 at 1152.298 kb on - strand, within Psyr_1020 at 1152.331 kb on + strand, within Psyr_1020 at 1152.332 kb on - strand, within Psyr_1020 at 1152.418 kb on + strand, within Psyr_1020 at 1152.418 kb on + strand, within Psyr_1020 at 1152.419 kb on - strand, within Psyr_1020 at 1152.419 kb on - strand, within Psyr_1020 at 1152.419 kb on - strand, within Psyr_1020 at 1152.433 kb on + strand, within Psyr_1020 at 1152.433 kb on + strand, within Psyr_1020 at 1152.434 kb on - strand, within Psyr_1020 at 1152.434 kb on - strand, within Psyr_1020 at 1152.568 kb on + strand at 1152.568 kb on + strand at 1152.569 kb on - strand at 1152.569 kb on - strand at 1152.569 kb on - strand at 1152.616 kb on + strand at 1152.616 kb on + strand at 1152.616 kb on + strand at 1152.616 kb on + strand at 1152.616 kb on + strand at 1152.616 kb on + strand at 1152.616 kb on + strand at 1152.616 kb on + strand at 1152.616 kb on + strand at 1152.616 kb on + strand at 1152.616 kb on + strand at 1152.616 kb on + strand at 1152.616 kb on + strand at 1152.617 kb on - strand at 1152.617 kb on - strand at 1152.617 kb on - strand at 1152.617 kb on - strand at 1152.617 kb on - strand at 1152.617 kb on - strand at 1152.617 kb on - strand at 1152.617 kb on - strand at 1152.617 kb on - strand at 1152.617 kb on - strand at 1152.617 kb on - strand at 1152.617 kb on - strand at 1152.617 kb on - strand at 1152.617 kb on - strand at 1152.617 kb on - strand at 1152.617 kb on - strand at 1152.617 kb on - strand at 1152.617 kb on - strand at 1152.617 kb on - strand at 1152.634 kb on + strand at 1152.649 kb on + strand, within Psyr_1021 at 1152.673 kb on - strand, within Psyr_1021 at 1152.710 kb on - strand, within Psyr_1021 at 1152.753 kb on + strand, within Psyr_1021 at 1152.753 kb on + strand, within Psyr_1021 at 1152.754 kb on - strand, within Psyr_1021 at 1152.754 kb on - strand, within Psyr_1021 at 1152.881 kb on + strand, within Psyr_1021 at 1152.881 kb on + strand, within Psyr_1021 at 1153.227 kb on + strand at 1153.228 kb on - strand at 1153.228 kb on - strand at 1153.228 kb on - strand at 1153.256 kb on + strand at 1153.290 kb on + strand at 1153.319 kb on + strand at 1153.320 kb on - strand at 1153.356 kb on - strand at 1153.375 kb on + strand at 1153.505 kb on + strand at 1153.506 kb on - strand at 1153.513 kb on + strand at 1153.606 kb on + strand, within Psyr_1022 at 1153.607 kb on - strand, within Psyr_1022 at 1153.607 kb on - strand, within Psyr_1022 at 1153.607 kb on - strand, within Psyr_1022 at 1154.072 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.081 kb on + strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.082 kb on - strand at 1154.083 kb on + strand at 1154.083 kb on + strand at 1154.083 kb on + strand at 1154.084 kb on - strand at 1154.084 kb on - strand at 1154.084 kb on - strand at 1154.183 kb on - strand at 1154.231 kb on + strand at 1154.232 kb on - strand at 1154.276 kb on + strand at 1154.276 kb on + strand at 1154.276 kb on + strand at 1154.276 kb on + strand at 1154.276 kb on + strand at 1154.276 kb on + strand at 1154.276 kb on + strand at 1154.277 kb on - strand at 1154.277 kb on - strand at 1154.277 kb on - strand at 1154.277 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C) remove 1,151,603 + -0.6 1,151,604 - +0.0 1,151,690 + Psyr_1019 0.21 +3.1 1,151,690 + Psyr_1019 0.21 -0.6 1,151,690 + Psyr_1019 0.21 +0.5 1,151,690 + Psyr_1019 0.21 +0.8 1,151,690 + Psyr_1019 0.21 +0.8 1,151,690 + Psyr_1019 0.21 -0.6 1,151,691 - Psyr_1019 0.22 +0.9 1,151,691 - Psyr_1019 0.22 +0.4 1,151,691 - Psyr_1019 0.22 +1.4 1,151,691 - Psyr_1019 0.22 +0.0 1,151,805 - Psyr_1019 0.52 +2.8 1,151,805 - Psyr_1019 0.52 -0.3 1,151,856 - Psyr_1019 0.66 +1.3 1,151,856 - Psyr_1019 0.66 +0.3 1,151,983 + +1.2 1,152,065 + Psyr_1020 0.15 +2.4 1,152,065 + Psyr_1020 0.15 +1.4 1,152,065 + Psyr_1020 0.15 +2.0 1,152,065 + Psyr_1020 0.15 +0.4 1,152,065 + Psyr_1020 0.15 +0.2 1,152,065 + Psyr_1020 0.15 +0.0 1,152,065 + Psyr_1020 0.15 +1.4 1,152,066 - Psyr_1020 0.15 +0.4 1,152,066 - Psyr_1020 0.15 -1.1 1,152,066 - Psyr_1020 0.15 +0.6 1,152,066 - Psyr_1020 0.15 -1.0 1,152,066 - Psyr_1020 0.15 -2.0 1,152,066 - Psyr_1020 0.15 +0.0 1,152,066 - Psyr_1020 0.15 -1.0 1,152,066 - Psyr_1020 0.15 -1.4 1,152,066 - Psyr_1020 0.15 -1.8 1,152,066 - Psyr_1020 0.15 +0.4 1,152,066 - Psyr_1020 0.15 -1.0 1,152,066 - Psyr_1020 0.15 +2.5 1,152,139 - Psyr_1020 0.28 +0.0 1,152,139 - Psyr_1020 0.28 -0.7 1,152,278 - Psyr_1020 0.52 -0.9 1,152,278 - Psyr_1020 0.52 +0.0 1,152,278 - Psyr_1020 0.52 +0.2 1,152,298 - Psyr_1020 0.56 -2.6 1,152,331 + Psyr_1020 0.62 +0.0 1,152,332 - Psyr_1020 0.62 -0.9 1,152,418 + Psyr_1020 0.77 +1.0 1,152,418 + Psyr_1020 0.77 +0.0 1,152,419 - Psyr_1020 0.77 +1.0 1,152,419 - Psyr_1020 0.77 +1.3 1,152,419 - Psyr_1020 0.77 -2.0 1,152,433 + Psyr_1020 0.80 +0.2 1,152,433 + Psyr_1020 0.80 +0.6 1,152,434 - Psyr_1020 0.80 +0.3 1,152,434 - Psyr_1020 0.80 -1.0 1,152,568 + +0.6 1,152,568 + -0.4 1,152,569 - -0.4 1,152,569 - +0.4 1,152,569 - -1.8 1,152,616 + +0.8 1,152,616 + +0.5 1,152,616 + +0.0 1,152,616 + -1.2 1,152,616 + +0.4 1,152,616 + +0.7 1,152,616 + +2.8 1,152,616 + +1.0 1,152,616 + +1.0 1,152,616 + -0.0 1,152,616 + -0.5 1,152,616 + +1.0 1,152,616 + -0.7 1,152,617 - -3.4 1,152,617 - -1.1 1,152,617 - +1.0 1,152,617 - -4.0 1,152,617 - -2.3 1,152,617 - -2.6 1,152,617 - -3.7 1,152,617 - -2.8 1,152,617 - +1.4 1,152,617 - -2.6 1,152,617 - -4.6 1,152,617 - -2.0 1,152,617 - -1.0 1,152,617 - -3.0 1,152,617 - -2.3 1,152,617 - -1.3 1,152,617 - -1.6 1,152,617 - -2.3 1,152,617 - -2.3 1,152,634 + +0.0 1,152,649 + Psyr_1021 0.12 +0.7 1,152,673 - Psyr_1021 0.15 -1.6 1,152,710 - Psyr_1021 0.20 +0.0 1,152,753 + Psyr_1021 0.26 -2.1 1,152,753 + Psyr_1021 0.26 +0.9 1,152,754 - Psyr_1021 0.26 -4.8 1,152,754 - Psyr_1021 0.26 -3.7 1,152,881 + Psyr_1021 0.44 -0.1 1,152,881 + Psyr_1021 0.44 -1.8 1,153,227 + -0.8 1,153,228 - -2.3 1,153,228 - -0.3 1,153,228 - -2.6 1,153,256 + +1.4 1,153,290 + -0.3 1,153,319 + +1.5 1,153,320 - +0.0 1,153,356 - +0.6 1,153,375 + +0.4 1,153,505 + +0.8 1,153,506 - +0.5 1,153,513 + -1.0 1,153,606 + Psyr_1022 0.17 -1.0 1,153,607 - Psyr_1022 0.17 -0.2 1,153,607 - Psyr_1022 0.17 -2.6 1,153,607 - Psyr_1022 0.17 +1.6 1,154,072 + -0.7 1,154,081 + -1.3 1,154,081 + -1.0 1,154,081 + -1.3 1,154,081 + +0.2 1,154,081 + -1.6 1,154,081 + +1.7 1,154,081 + -0.6 1,154,081 + -1.0 1,154,081 + +0.4 1,154,081 + -1.0 1,154,081 + -0.3 1,154,081 + -1.0 1,154,081 + -0.3 1,154,081 + +0.0 1,154,081 + -1.6 1,154,081 + -0.7 1,154,081 + -0.1 1,154,081 + +0.8 1,154,081 + -0.2 1,154,081 + -0.9 1,154,081 + -2.0 1,154,081 + +0.5 1,154,081 + +0.3 1,154,081 + -0.3 1,154,081 + +1.3 1,154,081 + +0.4 1,154,081 + -0.7 1,154,081 + +0.9 1,154,081 + +1.0 1,154,081 + +0.0 1,154,081 + -0.5 1,154,081 + +0.3 1,154,081 + +0.4 1,154,081 + -2.4 1,154,081 + -0.7 1,154,081 + -1.6 1,154,081 + -0.5 1,154,081 + -1.0 1,154,081 + +0.9 1,154,081 + -1.0 1,154,081 + +1.3 1,154,081 + +0.6 1,154,081 + -0.7 1,154,081 + -0.2 1,154,081 + -1.0 1,154,081 + +0.3 1,154,082 - -0.9 1,154,082 - +1.2 1,154,082 - +0.8 1,154,082 - -1.0 1,154,082 - +0.0 1,154,082 - +1.0 1,154,082 - +1.0 1,154,082 - +1.0 1,154,082 - +0.2 1,154,082 - -0.8 1,154,082 - -3.0 1,154,082 - -0.9 1,154,082 - -0.3 1,154,082 - +0.9 1,154,082 - +0.3 1,154,082 - -1.0 1,154,082 - +0.0 1,154,082 - -1.2 1,154,082 - -1.8 1,154,082 - +0.5 1,154,082 - +1.3 1,154,082 - +2.5 1,154,082 - -0.7 1,154,082 - +0.0 1,154,082 - +0.5 1,154,082 - +1.0 1,154,082 - +0.7 1,154,082 - +1.5 1,154,082 - +1.0 1,154,082 - -1.0 1,154,082 - +1.2 1,154,082 - +0.0 1,154,082 - +0.6 1,154,082 - +1.1 1,154,082 - -0.6 1,154,082 - -0.4 1,154,082 - +0.0 1,154,082 - -0.7 1,154,082 - +0.2 1,154,082 - -0.8 1,154,083 + +1.2 1,154,083 + -1.3 1,154,083 + +0.4 1,154,084 - +1.3 1,154,084 - -0.4 1,154,084 - +0.0 1,154,183 - -0.4 1,154,231 + -0.2 1,154,232 - -0.4 1,154,276 + -0.3 1,154,276 + -1.1 1,154,276 + +0.2 1,154,276 + -0.3 1,154,276 + -0.7 1,154,276 + +2.0 1,154,276 + -0.3 1,154,277 - +3.0 1,154,277 - -1.4 1,154,277 - -0.6 1,154,277 - +0.4
Or see this region's nucleotide sequence