Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1021

Experiment: 4-hydroxybutyric (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1018 and Psyr_1019 are separated by 43 nucleotidesPsyr_1019 and Psyr_1020 overlap by 1 nucleotidesPsyr_1020 and Psyr_1021 are separated by 21 nucleotidesPsyr_1021 and Psyr_1022 are separated by 234 nucleotidesPsyr_1022 and Psyr_1023 are separated by 151 nucleotides Psyr_1018: Psyr_1018 - Protein of unknown function DUF1244, at 1,151,268 to 1,151,567 _1018 Psyr_1019: Psyr_1019 - Dihydroneopterin aldolase, at 1,151,611 to 1,151,982 _1019 Psyr_1020: Psyr_1020 - GTP cyclohydrolase I, at 1,151,982 to 1,152,545 _1020 Psyr_1021: Psyr_1021 - Short-chain dehydrogenase/reductase SDR, at 1,152,567 to 1,153,277 _1021 Psyr_1022: Psyr_1022 - conserved hypothetical protein, at 1,153,512 to 1,154,078 _1022 Psyr_1023: Psyr_1023 - conserved hypothetical protein, at 1,154,230 to 1,154,835 _1023 Position (kb) 1152 1153 1154Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1151.603 kb on + strandat 1151.604 kb on - strandat 1151.690 kb on + strand, within Psyr_1019at 1151.690 kb on + strand, within Psyr_1019at 1151.690 kb on + strand, within Psyr_1019at 1151.690 kb on + strand, within Psyr_1019at 1151.690 kb on + strand, within Psyr_1019at 1151.690 kb on + strand, within Psyr_1019at 1151.691 kb on - strand, within Psyr_1019at 1151.691 kb on - strand, within Psyr_1019at 1151.691 kb on - strand, within Psyr_1019at 1151.691 kb on - strand, within Psyr_1019at 1151.805 kb on - strand, within Psyr_1019at 1151.805 kb on - strand, within Psyr_1019at 1151.856 kb on - strand, within Psyr_1019at 1151.856 kb on - strand, within Psyr_1019at 1151.983 kb on + strandat 1152.065 kb on + strand, within Psyr_1020at 1152.065 kb on + strand, within Psyr_1020at 1152.065 kb on + strand, within Psyr_1020at 1152.065 kb on + strand, within Psyr_1020at 1152.065 kb on + strand, within Psyr_1020at 1152.065 kb on + strand, within Psyr_1020at 1152.065 kb on + strand, within Psyr_1020at 1152.066 kb on - strand, within Psyr_1020at 1152.066 kb on - strand, within Psyr_1020at 1152.066 kb on - strand, within Psyr_1020at 1152.066 kb on - strand, within Psyr_1020at 1152.066 kb on - strand, within Psyr_1020at 1152.066 kb on - strand, within Psyr_1020at 1152.066 kb on - strand, within Psyr_1020at 1152.066 kb on - strand, within Psyr_1020at 1152.066 kb on - strand, within Psyr_1020at 1152.066 kb on - strand, within Psyr_1020at 1152.066 kb on - strand, within Psyr_1020at 1152.066 kb on - strand, within Psyr_1020at 1152.139 kb on - strand, within Psyr_1020at 1152.139 kb on - strand, within Psyr_1020at 1152.278 kb on - strand, within Psyr_1020at 1152.278 kb on - strand, within Psyr_1020at 1152.278 kb on - strand, within Psyr_1020at 1152.298 kb on - strand, within Psyr_1020at 1152.331 kb on + strand, within Psyr_1020at 1152.332 kb on - strand, within Psyr_1020at 1152.418 kb on + strand, within Psyr_1020at 1152.418 kb on + strand, within Psyr_1020at 1152.419 kb on - strand, within Psyr_1020at 1152.419 kb on - strand, within Psyr_1020at 1152.419 kb on - strand, within Psyr_1020at 1152.433 kb on + strand, within Psyr_1020at 1152.433 kb on + strand, within Psyr_1020at 1152.434 kb on - strand, within Psyr_1020at 1152.434 kb on - strand, within Psyr_1020at 1152.568 kb on + strandat 1152.568 kb on + strandat 1152.569 kb on - strandat 1152.569 kb on - strandat 1152.569 kb on - strandat 1152.616 kb on + strandat 1152.616 kb on + strandat 1152.616 kb on + strandat 1152.616 kb on + strandat 1152.616 kb on + strandat 1152.616 kb on + strandat 1152.616 kb on + strandat 1152.616 kb on + strandat 1152.616 kb on + strandat 1152.616 kb on + strandat 1152.616 kb on + strandat 1152.616 kb on + strandat 1152.616 kb on + strandat 1152.617 kb on - strandat 1152.617 kb on - strandat 1152.617 kb on - strandat 1152.617 kb on - strandat 1152.617 kb on - strandat 1152.617 kb on - strandat 1152.617 kb on - strandat 1152.617 kb on - strandat 1152.617 kb on - strandat 1152.617 kb on - strandat 1152.617 kb on - strandat 1152.617 kb on - strandat 1152.617 kb on - strandat 1152.617 kb on - strandat 1152.617 kb on - strandat 1152.617 kb on - strandat 1152.617 kb on - strandat 1152.617 kb on - strandat 1152.617 kb on - strandat 1152.634 kb on + strandat 1152.649 kb on + strand, within Psyr_1021at 1152.673 kb on - strand, within Psyr_1021at 1152.710 kb on - strand, within Psyr_1021at 1152.753 kb on + strand, within Psyr_1021at 1152.753 kb on + strand, within Psyr_1021at 1152.754 kb on - strand, within Psyr_1021at 1152.754 kb on - strand, within Psyr_1021at 1152.881 kb on + strand, within Psyr_1021at 1152.881 kb on + strand, within Psyr_1021at 1153.227 kb on + strandat 1153.228 kb on - strandat 1153.228 kb on - strandat 1153.228 kb on - strandat 1153.256 kb on + strandat 1153.290 kb on + strandat 1153.319 kb on + strandat 1153.320 kb on - strandat 1153.356 kb on - strandat 1153.375 kb on + strandat 1153.505 kb on + strandat 1153.506 kb on - strandat 1153.513 kb on + strandat 1153.606 kb on + strand, within Psyr_1022at 1153.607 kb on - strand, within Psyr_1022at 1153.607 kb on - strand, within Psyr_1022at 1153.607 kb on - strand, within Psyr_1022at 1154.072 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.081 kb on + strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.082 kb on - strandat 1154.083 kb on + strandat 1154.083 kb on + strandat 1154.083 kb on + strandat 1154.084 kb on - strandat 1154.084 kb on - strandat 1154.084 kb on - strandat 1154.183 kb on - strandat 1154.231 kb on + strandat 1154.232 kb on - strandat 1154.276 kb on + strandat 1154.276 kb on + strandat 1154.276 kb on + strandat 1154.276 kb on + strandat 1154.276 kb on + strandat 1154.276 kb on + strandat 1154.276 kb on + strandat 1154.277 kb on - strandat 1154.277 kb on - strandat 1154.277 kb on - strandat 1154.277 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C)
remove
1,151,603 + -0.6
1,151,604 - +0.0
1,151,690 + Psyr_1019 0.21 +3.1
1,151,690 + Psyr_1019 0.21 -0.6
1,151,690 + Psyr_1019 0.21 +0.5
1,151,690 + Psyr_1019 0.21 +0.8
1,151,690 + Psyr_1019 0.21 +0.8
1,151,690 + Psyr_1019 0.21 -0.6
1,151,691 - Psyr_1019 0.22 +0.9
1,151,691 - Psyr_1019 0.22 +0.4
1,151,691 - Psyr_1019 0.22 +1.4
1,151,691 - Psyr_1019 0.22 +0.0
1,151,805 - Psyr_1019 0.52 +2.8
1,151,805 - Psyr_1019 0.52 -0.3
1,151,856 - Psyr_1019 0.66 +1.3
1,151,856 - Psyr_1019 0.66 +0.3
1,151,983 + +1.2
1,152,065 + Psyr_1020 0.15 +2.4
1,152,065 + Psyr_1020 0.15 +1.4
1,152,065 + Psyr_1020 0.15 +2.0
1,152,065 + Psyr_1020 0.15 +0.4
1,152,065 + Psyr_1020 0.15 +0.2
1,152,065 + Psyr_1020 0.15 +0.0
1,152,065 + Psyr_1020 0.15 +1.4
1,152,066 - Psyr_1020 0.15 +0.4
1,152,066 - Psyr_1020 0.15 -1.1
1,152,066 - Psyr_1020 0.15 +0.6
1,152,066 - Psyr_1020 0.15 -1.0
1,152,066 - Psyr_1020 0.15 -2.0
1,152,066 - Psyr_1020 0.15 +0.0
1,152,066 - Psyr_1020 0.15 -1.0
1,152,066 - Psyr_1020 0.15 -1.4
1,152,066 - Psyr_1020 0.15 -1.8
1,152,066 - Psyr_1020 0.15 +0.4
1,152,066 - Psyr_1020 0.15 -1.0
1,152,066 - Psyr_1020 0.15 +2.5
1,152,139 - Psyr_1020 0.28 +0.0
1,152,139 - Psyr_1020 0.28 -0.7
1,152,278 - Psyr_1020 0.52 -0.9
1,152,278 - Psyr_1020 0.52 +0.0
1,152,278 - Psyr_1020 0.52 +0.2
1,152,298 - Psyr_1020 0.56 -2.6
1,152,331 + Psyr_1020 0.62 +0.0
1,152,332 - Psyr_1020 0.62 -0.9
1,152,418 + Psyr_1020 0.77 +1.0
1,152,418 + Psyr_1020 0.77 +0.0
1,152,419 - Psyr_1020 0.77 +1.0
1,152,419 - Psyr_1020 0.77 +1.3
1,152,419 - Psyr_1020 0.77 -2.0
1,152,433 + Psyr_1020 0.80 +0.2
1,152,433 + Psyr_1020 0.80 +0.6
1,152,434 - Psyr_1020 0.80 +0.3
1,152,434 - Psyr_1020 0.80 -1.0
1,152,568 + +0.6
1,152,568 + -0.4
1,152,569 - -0.4
1,152,569 - +0.4
1,152,569 - -1.8
1,152,616 + +0.8
1,152,616 + +0.5
1,152,616 + +0.0
1,152,616 + -1.2
1,152,616 + +0.4
1,152,616 + +0.7
1,152,616 + +2.8
1,152,616 + +1.0
1,152,616 + +1.0
1,152,616 + -0.0
1,152,616 + -0.5
1,152,616 + +1.0
1,152,616 + -0.7
1,152,617 - -3.4
1,152,617 - -1.1
1,152,617 - +1.0
1,152,617 - -4.0
1,152,617 - -2.3
1,152,617 - -2.6
1,152,617 - -3.7
1,152,617 - -2.8
1,152,617 - +1.4
1,152,617 - -2.6
1,152,617 - -4.6
1,152,617 - -2.0
1,152,617 - -1.0
1,152,617 - -3.0
1,152,617 - -2.3
1,152,617 - -1.3
1,152,617 - -1.6
1,152,617 - -2.3
1,152,617 - -2.3
1,152,634 + +0.0
1,152,649 + Psyr_1021 0.12 +0.7
1,152,673 - Psyr_1021 0.15 -1.6
1,152,710 - Psyr_1021 0.20 +0.0
1,152,753 + Psyr_1021 0.26 -2.1
1,152,753 + Psyr_1021 0.26 +0.9
1,152,754 - Psyr_1021 0.26 -4.8
1,152,754 - Psyr_1021 0.26 -3.7
1,152,881 + Psyr_1021 0.44 -0.1
1,152,881 + Psyr_1021 0.44 -1.8
1,153,227 + -0.8
1,153,228 - -2.3
1,153,228 - -0.3
1,153,228 - -2.6
1,153,256 + +1.4
1,153,290 + -0.3
1,153,319 + +1.5
1,153,320 - +0.0
1,153,356 - +0.6
1,153,375 + +0.4
1,153,505 + +0.8
1,153,506 - +0.5
1,153,513 + -1.0
1,153,606 + Psyr_1022 0.17 -1.0
1,153,607 - Psyr_1022 0.17 -0.2
1,153,607 - Psyr_1022 0.17 -2.6
1,153,607 - Psyr_1022 0.17 +1.6
1,154,072 + -0.7
1,154,081 + -1.3
1,154,081 + -1.0
1,154,081 + -1.3
1,154,081 + +0.2
1,154,081 + -1.6
1,154,081 + +1.7
1,154,081 + -0.6
1,154,081 + -1.0
1,154,081 + +0.4
1,154,081 + -1.0
1,154,081 + -0.3
1,154,081 + -1.0
1,154,081 + -0.3
1,154,081 + +0.0
1,154,081 + -1.6
1,154,081 + -0.7
1,154,081 + -0.1
1,154,081 + +0.8
1,154,081 + -0.2
1,154,081 + -0.9
1,154,081 + -2.0
1,154,081 + +0.5
1,154,081 + +0.3
1,154,081 + -0.3
1,154,081 + +1.3
1,154,081 + +0.4
1,154,081 + -0.7
1,154,081 + +0.9
1,154,081 + +1.0
1,154,081 + +0.0
1,154,081 + -0.5
1,154,081 + +0.3
1,154,081 + +0.4
1,154,081 + -2.4
1,154,081 + -0.7
1,154,081 + -1.6
1,154,081 + -0.5
1,154,081 + -1.0
1,154,081 + +0.9
1,154,081 + -1.0
1,154,081 + +1.3
1,154,081 + +0.6
1,154,081 + -0.7
1,154,081 + -0.2
1,154,081 + -1.0
1,154,081 + +0.3
1,154,082 - -0.9
1,154,082 - +1.2
1,154,082 - +0.8
1,154,082 - -1.0
1,154,082 - +0.0
1,154,082 - +1.0
1,154,082 - +1.0
1,154,082 - +1.0
1,154,082 - +0.2
1,154,082 - -0.8
1,154,082 - -3.0
1,154,082 - -0.9
1,154,082 - -0.3
1,154,082 - +0.9
1,154,082 - +0.3
1,154,082 - -1.0
1,154,082 - +0.0
1,154,082 - -1.2
1,154,082 - -1.8
1,154,082 - +0.5
1,154,082 - +1.3
1,154,082 - +2.5
1,154,082 - -0.7
1,154,082 - +0.0
1,154,082 - +0.5
1,154,082 - +1.0
1,154,082 - +0.7
1,154,082 - +1.5
1,154,082 - +1.0
1,154,082 - -1.0
1,154,082 - +1.2
1,154,082 - +0.0
1,154,082 - +0.6
1,154,082 - +1.1
1,154,082 - -0.6
1,154,082 - -0.4
1,154,082 - +0.0
1,154,082 - -0.7
1,154,082 - +0.2
1,154,082 - -0.8
1,154,083 + +1.2
1,154,083 + -1.3
1,154,083 + +0.4
1,154,084 - +1.3
1,154,084 - -0.4
1,154,084 - +0.0
1,154,183 - -0.4
1,154,231 + -0.2
1,154,232 - -0.4
1,154,276 + -0.3
1,154,276 + -1.1
1,154,276 + +0.2
1,154,276 + -0.3
1,154,276 + -0.7
1,154,276 + +2.0
1,154,276 + -0.3
1,154,277 - +3.0
1,154,277 - -1.4
1,154,277 - -0.6
1,154,277 - +0.4

Or see this region's nucleotide sequence