Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1021

Experiment: 4-hydroxybutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-hydroxybutyric (C)
1,151,603	+				-0.6
1,151,604	-				+0.0
1,151,690	+		Psyr_1019	0.21	+3.1
1,151,690	+		Psyr_1019	0.21	-0.6
1,151,690	+		Psyr_1019	0.21	+0.5
1,151,690	+		Psyr_1019	0.21	+0.8
1,151,690	+		Psyr_1019	0.21	+0.8
1,151,690	+		Psyr_1019	0.21	-0.6
1,151,691	-		Psyr_1019	0.22	+0.9
1,151,691	-		Psyr_1019	0.22	+0.4
1,151,691	-		Psyr_1019	0.22	+1.4
1,151,691	-		Psyr_1019	0.22	+0.0
1,151,805	-		Psyr_1019	0.52	+2.8
1,151,805	-		Psyr_1019	0.52	-0.3
1,151,856	-		Psyr_1019	0.66	+1.3
1,151,856	-		Psyr_1019	0.66	+0.3
1,151,983	+				+1.2
1,152,065	+		Psyr_1020	0.15	+2.4
1,152,065	+		Psyr_1020	0.15	+1.4
1,152,065	+		Psyr_1020	0.15	+2.0
1,152,065	+		Psyr_1020	0.15	+0.4
1,152,065	+		Psyr_1020	0.15	+0.2
1,152,065	+		Psyr_1020	0.15	+0.0
1,152,065	+		Psyr_1020	0.15	+1.4
1,152,066	-		Psyr_1020	0.15	+0.4
1,152,066	-		Psyr_1020	0.15	-1.1
1,152,066	-		Psyr_1020	0.15	+0.6
1,152,066	-		Psyr_1020	0.15	-1.0
1,152,066	-		Psyr_1020	0.15	-2.0
1,152,066	-		Psyr_1020	0.15	+0.0
1,152,066	-		Psyr_1020	0.15	-1.0
1,152,066	-		Psyr_1020	0.15	-1.4
1,152,066	-		Psyr_1020	0.15	-1.8
1,152,066	-		Psyr_1020	0.15	+0.4
1,152,066	-		Psyr_1020	0.15	-1.0
1,152,066	-		Psyr_1020	0.15	+2.5
1,152,139	-		Psyr_1020	0.28	+0.0
1,152,139	-		Psyr_1020	0.28	-0.7
1,152,278	-		Psyr_1020	0.52	-0.9
1,152,278	-		Psyr_1020	0.52	+0.0
1,152,278	-		Psyr_1020	0.52	+0.2
1,152,298	-		Psyr_1020	0.56	-2.6
1,152,331	+		Psyr_1020	0.62	+0.0
1,152,332	-		Psyr_1020	0.62	-0.9
1,152,418	+		Psyr_1020	0.77	+1.0
1,152,418	+		Psyr_1020	0.77	+0.0
1,152,419	-		Psyr_1020	0.77	+1.0
1,152,419	-		Psyr_1020	0.77	+1.3
1,152,419	-		Psyr_1020	0.77	-2.0
1,152,433	+		Psyr_1020	0.80	+0.2
1,152,433	+		Psyr_1020	0.80	+0.6
1,152,434	-		Psyr_1020	0.80	+0.3
1,152,434	-		Psyr_1020	0.80	-1.0
1,152,568	+				+0.6
1,152,568	+				-0.4
1,152,569	-				-0.4
1,152,569	-				+0.4
1,152,569	-				-1.8
1,152,616	+				+0.8
1,152,616	+				+0.5
1,152,616	+				+0.0
1,152,616	+				-1.2
1,152,616	+				+0.4
1,152,616	+				+0.7
1,152,616	+				+2.8
1,152,616	+				+1.0
1,152,616	+				+1.0
1,152,616	+				-0.0
1,152,616	+				-0.5
1,152,616	+				+1.0
1,152,616	+				-0.7
1,152,617	-				-3.4
1,152,617	-				-1.1
1,152,617	-				+1.0
1,152,617	-				-4.0
1,152,617	-				-2.3
1,152,617	-				-2.6
1,152,617	-				-3.7
1,152,617	-				-2.8
1,152,617	-				+1.4
1,152,617	-				-2.6
1,152,617	-				-4.6
1,152,617	-				-2.0
1,152,617	-				-1.0
1,152,617	-				-3.0
1,152,617	-				-2.3
1,152,617	-				-1.3
1,152,617	-				-1.6
1,152,617	-				-2.3
1,152,617	-				-2.3
1,152,634	+				+0.0
1,152,649	+		Psyr_1021	0.12	+0.7
1,152,673	-		Psyr_1021	0.15	-1.6
1,152,710	-		Psyr_1021	0.20	+0.0
1,152,753	+		Psyr_1021	0.26	-2.1
1,152,753	+		Psyr_1021	0.26	+0.9
1,152,754	-		Psyr_1021	0.26	-4.8
1,152,754	-		Psyr_1021	0.26	-3.7
1,152,881	+		Psyr_1021	0.44	-0.1
1,152,881	+		Psyr_1021	0.44	-1.8
1,153,227	+				-0.8
1,153,228	-				-2.3
1,153,228	-				-0.3
1,153,228	-				-2.6
1,153,256	+				+1.4
1,153,290	+				-0.3
1,153,319	+				+1.5
1,153,320	-				+0.0
1,153,356	-				+0.6
1,153,375	+				+0.4
1,153,505	+				+0.8
1,153,506	-				+0.5
1,153,513	+				-1.0
1,153,606	+		Psyr_1022	0.17	-1.0
1,153,607	-		Psyr_1022	0.17	-0.2
1,153,607	-		Psyr_1022	0.17	-2.6
1,153,607	-		Psyr_1022	0.17	+1.6
1,154,072	+				-0.7
1,154,081	+				-1.3
1,154,081	+				-1.0
1,154,081	+				-1.3
1,154,081	+				+0.2
1,154,081	+				-1.6
1,154,081	+				+1.7
1,154,081	+				-0.6
1,154,081	+				-1.0
1,154,081	+				+0.4
1,154,081	+				-1.0
1,154,081	+				-0.3
1,154,081	+				-1.0
1,154,081	+				-0.3
1,154,081	+				+0.0
1,154,081	+				-1.6
1,154,081	+				-0.7
1,154,081	+				-0.1
1,154,081	+				+0.8
1,154,081	+				-0.2
1,154,081	+				-0.9
1,154,081	+				-2.0
1,154,081	+				+0.5
1,154,081	+				+0.3
1,154,081	+				-0.3
1,154,081	+				+1.3
1,154,081	+				+0.4
1,154,081	+				-0.7
1,154,081	+				+0.9
1,154,081	+				+1.0
1,154,081	+				+0.0
1,154,081	+				-0.5
1,154,081	+				+0.3
1,154,081	+				+0.4
1,154,081	+				-2.4
1,154,081	+				-0.7
1,154,081	+				-1.6
1,154,081	+				-0.5
1,154,081	+				-1.0
1,154,081	+				+0.9
1,154,081	+				-1.0
1,154,081	+				+1.3
1,154,081	+				+0.6
1,154,081	+				-0.7
1,154,081	+				-0.2
1,154,081	+				-1.0
1,154,081	+				+0.3
1,154,082	-				-0.9
1,154,082	-				+1.2
1,154,082	-				+0.8
1,154,082	-				-1.0
1,154,082	-				+0.0
1,154,082	-				+1.0
1,154,082	-				+1.0
1,154,082	-				+1.0
1,154,082	-				+0.2
1,154,082	-				-0.8
1,154,082	-				-3.0
1,154,082	-				-0.9
1,154,082	-				-0.3
1,154,082	-				+0.9
1,154,082	-				+0.3
1,154,082	-				-1.0
1,154,082	-				+0.0
1,154,082	-				-1.2
1,154,082	-				-1.8
1,154,082	-				+0.5
1,154,082	-				+1.3
1,154,082	-				+2.5
1,154,082	-				-0.7
1,154,082	-				+0.0
1,154,082	-				+0.5
1,154,082	-				+1.0
1,154,082	-				+0.7
1,154,082	-				+1.5
1,154,082	-				+1.0
1,154,082	-				-1.0
1,154,082	-				+1.2
1,154,082	-				+0.0
1,154,082	-				+0.6
1,154,082	-				+1.1
1,154,082	-				-0.6
1,154,082	-				-0.4
1,154,082	-				+0.0
1,154,082	-				-0.7
1,154,082	-				+0.2
1,154,082	-				-0.8
1,154,083	+				+1.2
1,154,083	+				-1.3
1,154,083	+				+0.4
1,154,084	-				+1.3
1,154,084	-				-0.4
1,154,084	-				+0.0
1,154,183	-				-0.4
1,154,231	+				-0.2
1,154,232	-				-0.4
1,154,276	+				-0.3
1,154,276	+				-1.1
1,154,276	+				+0.2
1,154,276	+				-0.3
1,154,276	+				-0.7
1,154,276	+				+2.0
1,154,276	+				-0.3
1,154,277	-				+3.0
1,154,277	-				-1.4
1,154,277	-				-0.6
1,154,277	-				+0.4