Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0903

Experiment: 4-hydroxybutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-hydroxybutyric (C)
1,021,112	+				-0.0
1,021,113	-				-0.6
1,021,196	+		Psyr_0902	0.16	-0.1
1,021,196	+		Psyr_0902	0.16	-0.8
1,021,197	-		Psyr_0902	0.16	+0.2
1,021,286	+		Psyr_0902	0.27	+1.1
1,021,286	+		Psyr_0902	0.27	+1.1
1,021,286	+		Psyr_0902	0.27	-1.9
1,021,287	-		Psyr_0902	0.27	-0.2
1,021,287	-		Psyr_0902	0.27	-0.9
1,021,418	+		Psyr_0902	0.43	-0.3
1,021,419	-		Psyr_0902	0.43	-0.6
1,021,419	-		Psyr_0902	0.43	-0.6
1,021,419	-		Psyr_0902	0.43	+0.1
1,021,460	+		Psyr_0902	0.48	-0.2
1,021,460	+		Psyr_0902	0.48	+0.5
1,021,460	+		Psyr_0902	0.48	+1.0
1,021,461	-		Psyr_0902	0.48	+0.9
1,021,463	+		Psyr_0902	0.48	-0.7
1,021,463	+		Psyr_0902	0.48	+0.5
1,021,463	+		Psyr_0902	0.48	-0.2
1,021,463	+		Psyr_0902	0.48	-2.2
1,021,464	-		Psyr_0902	0.48	-0.4
1,021,464	-		Psyr_0902	0.48	-1.6
1,021,464	-		Psyr_0902	0.48	+0.3
1,021,464	-		Psyr_0902	0.48	+0.3
1,021,514	+		Psyr_0902	0.54	+1.1
1,021,514	+		Psyr_0902	0.54	+1.1
1,021,514	+		Psyr_0902	0.54	-0.0
1,021,583	+		Psyr_0902	0.62	-1.5
1,021,583	+		Psyr_0902	0.62	-0.9
1,021,583	+		Psyr_0902	0.62	-0.3
1,021,584	-		Psyr_0902	0.63	+0.9
1,021,584	-		Psyr_0902	0.63	-0.0
1,021,605	+		Psyr_0902	0.65	+1.7
1,021,693	+		Psyr_0902	0.76	+2.1
1,021,693	+		Psyr_0902	0.76	-0.4
1,021,693	+		Psyr_0902	0.76	+0.3
1,021,794	-		Psyr_0902	0.88	-0.3
1,021,816	+				+0.2
1,021,816	+				-0.2
1,021,817	-				+0.2
1,021,817	-				-2.7
1,021,817	-				+0.8
1,021,817	-				+0.1
1,021,879	-				-1.7
1,021,961	+				-0.4
1,021,962	-				+2.1
1,021,990	-				-0.6
1,022,020	+				+0.6
1,022,028	+				+0.1
1,022,087	+				-0.9
1,022,087	+				-0.3
1,022,088	-				+0.0
1,022,088	-				-1.9
1,022,088	-				-0.3
1,022,088	-				-2.9
1,022,093	-				-0.2
1,022,093	-				-0.2
1,022,093	-				+0.1
1,022,196	+				-0.0
1,022,196	+				+1.5
1,022,197	-				+1.1
1,022,197	-				+0.1
1,022,197	-				+0.4
1,022,197	-				+0.1
1,022,197	-				-2.5
1,022,201	+		Psyr_0903	0.10	-0.5
1,022,202	-		Psyr_0903	0.10	-0.9
1,022,203	+		Psyr_0903	0.10	-0.0
1,022,278	+		Psyr_0903	0.16	+1.3
1,022,279	-		Psyr_0903	0.16	+0.1
1,022,326	+		Psyr_0903	0.20	-0.2
1,022,327	-				-0.3
1,022,327	-		Psyr_0903	0.20	+1.7
1,022,327	-		Psyr_0903	0.20	+0.3
1,022,327	-		Psyr_0903	0.20	+0.1
1,022,369	-		Psyr_0903	0.23	+0.3
1,022,369	-		Psyr_0903	0.23	-0.5
1,022,380	+		Psyr_0903	0.24	+0.2
1,022,380	+		Psyr_0903	0.24	-0.3
1,022,380	+		Psyr_0903	0.24	-0.3
1,022,380	+		Psyr_0903	0.24	-0.8
1,022,381	-		Psyr_0903	0.24	-1.1
1,022,381	-		Psyr_0903	0.24	+1.2
1,022,381	-		Psyr_0903	0.24	+1.9
1,022,381	-		Psyr_0903	0.24	+2.9
1,022,381	-		Psyr_0903	0.24	-2.0
1,022,464	+		Psyr_0903	0.31	-0.9
1,022,464	+		Psyr_0903	0.31	+0.1
1,022,464	+		Psyr_0903	0.31	-1.1
1,022,464	+		Psyr_0903	0.31	+0.8
1,022,464	+		Psyr_0903	0.31	-0.0
1,022,464	+		Psyr_0903	0.31	-1.9
1,022,464	+		Psyr_0903	0.31	-1.0
1,022,465	-		Psyr_0903	0.31	-2.5
1,022,465	-		Psyr_0903	0.31	+0.9
1,022,465	-		Psyr_0903	0.31	-1.5
1,022,465	-		Psyr_0903	0.31	-0.8
1,022,465	-		Psyr_0903	0.31	-0.2
1,022,465	-		Psyr_0903	0.31	+0.1
1,022,465	-		Psyr_0903	0.31	-0.2
1,022,465	-		Psyr_0903	0.31	+0.3
1,022,465	-		Psyr_0903	0.31	-0.9
1,022,465	-		Psyr_0903	0.31	+0.5
1,022,465	-		Psyr_0903	0.31	-1.0
1,022,504	-		Psyr_0903	0.34	-1.9
1,022,504	-		Psyr_0903	0.34	+0.2
1,022,563	+		Psyr_0903	0.39	+0.1
1,022,563	+		Psyr_0903	0.39	-1.6
1,022,635	+		Psyr_0903	0.44	-1.5
1,022,635	+		Psyr_0903	0.44	+0.1
1,022,635	+		Psyr_0903	0.44	-0.5
1,022,635	+		Psyr_0903	0.44	-1.4
1,022,635	+		Psyr_0903	0.44	+1.4
1,022,635	+		Psyr_0903	0.44	+2.1
1,022,636	-		Psyr_0903	0.44	+2.4
1,022,636	-		Psyr_0903	0.44	-0.2
1,022,636	-		Psyr_0903	0.44	-0.2
1,022,636	-		Psyr_0903	0.44	-1.1
1,022,636	-		Psyr_0903	0.44	+1.5
1,022,636	-		Psyr_0903	0.44	+0.5
1,022,636	-		Psyr_0903	0.44	-1.1
1,022,636	-		Psyr_0903	0.44	-1.5
1,022,636	-		Psyr_0903	0.44	+0.1
1,022,668	-		Psyr_0903	0.47	-0.9
1,022,675	+		Psyr_0903	0.47	-2.4
1,022,676	-		Psyr_0903	0.48	+0.1
1,022,676	-		Psyr_0903	0.48	+0.1
1,022,676	-		Psyr_0903	0.48	+1.2
1,022,676	-		Psyr_0903	0.48	+2.3
1,022,676	-		Psyr_0903	0.48	-0.3
1,022,695	+		Psyr_0903	0.49	-0.3
1,022,695	+		Psyr_0903	0.49	+0.7
1,022,695	+		Psyr_0903	0.49	-0.5
1,022,696	-		Psyr_0903	0.49	+0.1
1,022,696	-		Psyr_0903	0.49	+0.7
1,022,696	-		Psyr_0903	0.49	+2.4
1,022,696	-		Psyr_0903	0.49	-0.8
1,022,696	-		Psyr_0903	0.49	+0.9
1,023,061	+		Psyr_0903	0.78	-0.4
1,023,094	-		Psyr_0903	0.80	+0.5
1,023,201	-		Psyr_0903	0.89	+0.5
1,023,211	+		Psyr_0903	0.90	+0.4
1,023,211	+		Psyr_0903	0.90	-0.3
1,023,211	+		Psyr_0903	0.90	-0.9
1,023,212	-		Psyr_0903	0.90	-0.4
1,023,212	-		Psyr_0903	0.90	+0.5
1,023,342	+				-0.7
1,023,342	+				-0.3
1,023,343	-				-0.2
1,023,343	-				+1.1
1,023,343	-				-1.0
1,023,420	+				+0.8
1,023,420	+				+0.9
1,023,420	+				+0.3
1,023,420	+				+0.6
1,023,421	-				+0.5
1,023,421	-				+0.7
1,023,421	-				-0.7
1,023,421	-				+1.7
1,023,421	-				-1.3
1,023,534	-				+0.7
1,023,534	-				+0.2
1,023,545	+				-0.7
1,023,545	+				-0.5
1,023,545	+				+0.5
1,023,546	-				+0.6
1,023,679	+				-0.1
1,023,680	-				-0.9
1,023,746	-				+1.5
1,023,768	+				-0.1
1,024,145	+		Psyr_0904	0.40	-1.3
1,024,145	+		Psyr_0904	0.40	-1.9
1,024,145	-		Psyr_0904	0.40	+1.1
1,024,146	-		Psyr_0904	0.40	+0.0
1,024,146	-		Psyr_0904	0.40	+0.8
1,024,192	+		Psyr_0904	0.46	+0.4
1,024,192	+		Psyr_0904	0.46	+1.1
1,024,192	+		Psyr_0904	0.46	+0.1
1,024,192	+		Psyr_0904	0.46	+0.4
1,024,192	+		Psyr_0904	0.46	+0.8
1,024,192	+		Psyr_0904	0.46	+3.1
1,024,193	-		Psyr_0904	0.46	+0.5
1,024,193	-		Psyr_0904	0.46	+0.4
1,024,193	-		Psyr_0904	0.46	-0.2
1,024,294	+		Psyr_0904	0.59	+0.1
1,024,294	+		Psyr_0904	0.59	-1.9
1,024,294	+		Psyr_0904	0.59	+0.5
1,024,294	+		Psyr_0904	0.59	-1.5
1,024,295	-		Psyr_0904	0.59	+0.9
1,024,295	-		Psyr_0904	0.59	+0.2
1,024,295	-		Psyr_0904	0.59	+0.3
1,024,295	-		Psyr_0904	0.59	-0.7
1,024,295	-		Psyr_0904	0.59	-3.0
1,024,295	-		Psyr_0904	0.59	+0.1
1,024,296	+		Psyr_0904	0.59	+0.9
1,024,296	+		Psyr_0904	0.59	+1.9