Experiment: 4-hydroxybutyric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0834 and Psyr_0835 are separated by 531 nucleotides Psyr_0835 and Psyr_0836 are separated by 348 nucleotides
Psyr_0834: Psyr_0834 - Glutamyl-tRNA synthetase, class Ic, at 945,989 to 946,876
_0834
Psyr_0835: Psyr_0835 - transcriptional regulator, TraR/DksA family, at 947,408 to 947,848
_0835
Psyr_0836: Psyr_0836 - Aminotransferase, class I and II, at 948,197 to 949,369
_0836
Position (kb) 947
948 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 946.458 kb on + strand, within Psyr_0834 at 946.534 kb on - strand, within Psyr_0834 at 946.538 kb on - strand, within Psyr_0834 at 946.538 kb on - strand, within Psyr_0834 at 946.581 kb on + strand, within Psyr_0834 at 946.718 kb on + strand, within Psyr_0834 at 946.789 kb on - strand at 946.858 kb on + strand at 946.933 kb on + strand at 947.238 kb on + strand at 947.345 kb on + strand at 947.345 kb on + strand at 947.346 kb on - strand at 947.346 kb on - strand at 947.346 kb on - strand at 947.413 kb on + strand at 947.414 kb on - strand at 947.507 kb on + strand, within Psyr_0835 at 947.532 kb on + strand, within Psyr_0835 at 947.680 kb on + strand, within Psyr_0835 at 947.680 kb on + strand, within Psyr_0835 at 947.680 kb on + strand, within Psyr_0835 at 947.680 kb on + strand, within Psyr_0835 at 947.680 kb on + strand, within Psyr_0835 at 947.681 kb on - strand, within Psyr_0835 at 947.681 kb on - strand, within Psyr_0835 at 947.681 kb on - strand, within Psyr_0835 at 947.681 kb on - strand, within Psyr_0835 at 947.687 kb on + strand, within Psyr_0835 at 947.688 kb on - strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.772 kb on + strand, within Psyr_0835 at 947.773 kb on - strand, within Psyr_0835 at 947.773 kb on - strand, within Psyr_0835 at 947.773 kb on - strand, within Psyr_0835 at 947.773 kb on - strand, within Psyr_0835 at 947.796 kb on + strand, within Psyr_0835 at 947.796 kb on + strand, within Psyr_0835 at 947.816 kb on + strand at 947.816 kb on + strand at 947.817 kb on - strand at 947.817 kb on - strand at 947.817 kb on - strand at 947.872 kb on + strand at 947.872 kb on + strand at 947.873 kb on - strand at 947.878 kb on - strand at 947.878 kb on - strand at 947.878 kb on - strand at 947.878 kb on - strand at 947.939 kb on + strand at 947.939 kb on + strand at 947.939 kb on + strand at 947.940 kb on - strand at 947.940 kb on - strand at 947.962 kb on + strand at 947.999 kb on - strand at 948.032 kb on + strand at 948.032 kb on + strand at 948.032 kb on + strand at 948.032 kb on + strand at 948.032 kb on + strand at 948.033 kb on - strand at 948.033 kb on - strand at 948.033 kb on - strand at 948.033 kb on - strand at 948.044 kb on - strand at 948.062 kb on + strand at 948.062 kb on + strand at 948.062 kb on + strand at 948.062 kb on + strand at 948.062 kb on + strand at 948.074 kb on - strand at 948.170 kb on + strand at 948.192 kb on + strand at 948.193 kb on - strand at 948.193 kb on - strand at 948.209 kb on + strand at 948.210 kb on - strand at 948.210 kb on - strand at 948.210 kb on - strand at 948.231 kb on + strand at 948.232 kb on - strand at 948.232 kb on - strand at 948.232 kb on - strand at 948.348 kb on + strand, within Psyr_0836 at 948.349 kb on - strand, within Psyr_0836 at 948.349 kb on - strand, within Psyr_0836 at 948.440 kb on + strand, within Psyr_0836 at 948.440 kb on + strand, within Psyr_0836 at 948.603 kb on + strand, within Psyr_0836 at 948.603 kb on + strand, within Psyr_0836 at 948.603 kb on + strand, within Psyr_0836 at 948.603 kb on + strand, within Psyr_0836 at 948.604 kb on - strand, within Psyr_0836 at 948.815 kb on + strand, within Psyr_0836 at 948.815 kb on + strand, within Psyr_0836 at 948.815 kb on + strand, within Psyr_0836 at 948.816 kb on - strand, within Psyr_0836 at 948.816 kb on - strand, within Psyr_0836 at 948.816 kb on - strand, within Psyr_0836 at 948.830 kb on + strand, within Psyr_0836 at 948.830 kb on + strand, within Psyr_0836 at 948.831 kb on - strand, within Psyr_0836 at 948.831 kb on - strand, within Psyr_0836 at 948.831 kb on - strand, within Psyr_0836 at 948.831 kb on - strand, within Psyr_0836
Per-strain Table
Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C) remove 946,458 + Psyr_0834 0.53 +0.1 946,534 - Psyr_0834 0.61 +0.9 946,538 - Psyr_0834 0.62 +1.1 946,538 - Psyr_0834 0.62 +1.8 946,581 + Psyr_0834 0.67 +0.9 946,718 + Psyr_0834 0.82 +2.1 946,789 - -0.1 946,858 + +0.5 946,933 + +0.9 947,238 + +0.1 947,345 + +1.1 947,345 + +0.6 947,346 - +0.7 947,346 - +0.6 947,346 - +1.7 947,413 + +1.0 947,414 - +1.4 947,507 + Psyr_0835 0.22 -3.0 947,532 + Psyr_0835 0.28 -1.9 947,680 + Psyr_0835 0.62 -2.2 947,680 + Psyr_0835 0.62 -0.9 947,680 + Psyr_0835 0.62 -1.5 947,680 + Psyr_0835 0.62 +1.1 947,680 + Psyr_0835 0.62 -1.5 947,681 - Psyr_0835 0.62 -0.9 947,681 - Psyr_0835 0.62 -0.9 947,681 - Psyr_0835 0.62 -2.5 947,681 - Psyr_0835 0.62 -1.5 947,687 + Psyr_0835 0.63 -1.5 947,688 - Psyr_0835 0.63 -1.9 947,772 + Psyr_0835 0.83 +0.1 947,772 + Psyr_0835 0.83 -1.5 947,772 + Psyr_0835 0.83 +0.1 947,772 + Psyr_0835 0.83 -1.9 947,772 + Psyr_0835 0.83 -1.5 947,772 + Psyr_0835 0.83 -1.5 947,772 + Psyr_0835 0.83 -0.5 947,772 + Psyr_0835 0.83 +0.1 947,772 + Psyr_0835 0.83 -2.5 947,772 + Psyr_0835 0.83 +1.5 947,772 + Psyr_0835 0.83 -2.7 947,773 - Psyr_0835 0.83 -2.5 947,773 - Psyr_0835 0.83 -2.5 947,773 - Psyr_0835 0.83 -3.8 947,773 - Psyr_0835 0.83 -0.9 947,796 + Psyr_0835 0.88 -0.2 947,796 + Psyr_0835 0.88 -0.9 947,816 + -2.7 947,816 + -3.0 947,817 - +0.1 947,817 - -3.2 947,817 - +0.1 947,872 + -1.9 947,872 + -2.7 947,873 - -0.7 947,878 - -1.5 947,878 - +1.0 947,878 - -0.5 947,878 - -1.7 947,939 + -0.9 947,939 + +0.1 947,939 + -1.9 947,940 - +0.9 947,940 - +0.8 947,962 + -2.7 947,999 - +0.4 948,032 + +1.7 948,032 + -2.2 948,032 + -1.6 948,032 + -0.6 948,032 + -1.5 948,033 - +2.4 948,033 - -0.3 948,033 - -0.6 948,033 - +0.1 948,044 - +0.3 948,062 + +1.7 948,062 + -0.1 948,062 + +0.9 948,062 + +0.6 948,062 + +0.5 948,074 - -0.6 948,170 + -0.1 948,192 + +2.5 948,193 - +0.3 948,193 - -0.5 948,209 + -0.9 948,210 - +0.3 948,210 - +1.0 948,210 - +1.7 948,231 + -0.1 948,232 - -0.5 948,232 - +1.3 948,232 - +0.7 948,348 + Psyr_0836 0.13 +0.1 948,349 - Psyr_0836 0.13 +1.4 948,349 - Psyr_0836 0.13 -1.5 948,440 + Psyr_0836 0.21 -0.9 948,440 + Psyr_0836 0.21 -0.9 948,603 + Psyr_0836 0.35 +0.4 948,603 + Psyr_0836 0.35 -0.4 948,603 + Psyr_0836 0.35 +0.4 948,603 + Psyr_0836 0.35 +0.8 948,604 - Psyr_0836 0.35 -1.5 948,815 + Psyr_0836 0.53 +1.0 948,815 + Psyr_0836 0.53 -0.5 948,815 + Psyr_0836 0.53 +0.1 948,816 - Psyr_0836 0.53 +1.0 948,816 - Psyr_0836 0.53 +2.1 948,816 - Psyr_0836 0.53 +0.7 948,830 + Psyr_0836 0.54 +0.3 948,830 + Psyr_0836 0.54 +0.8 948,831 - Psyr_0836 0.54 -1.9 948,831 - Psyr_0836 0.54 -0.9 948,831 - Psyr_0836 0.54 +1.1 948,831 - Psyr_0836 0.54 +0.5
Or see this region's nucleotide sequence