Experiment: 4-hydroxybutyric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0832 and Psyr_0833 overlap by 17 nucleotides Psyr_0833 and Psyr_0834 are separated by 98 nucleotides
Psyr_0832: Psyr_0832 - Two-component sensor kinase CbrA, at 942,776 to 945,730
_0832
Psyr_0833: Psyr_0833 - conserved hypothetical protein, at 945,714 to 945,890
_0833
Psyr_0834: Psyr_0834 - Glutamyl-tRNA synthetase, class Ic, at 945,989 to 946,876
_0834
Position (kb) 945
946 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 944.751 kb on + strand, within Psyr_0832 at 944.808 kb on + strand, within Psyr_0832 at 944.808 kb on + strand, within Psyr_0832 at 944.955 kb on + strand, within Psyr_0832 at 944.956 kb on - strand, within Psyr_0832 at 944.956 kb on - strand, within Psyr_0832 at 944.956 kb on - strand, within Psyr_0832 at 944.956 kb on - strand, within Psyr_0832 at 945.105 kb on + strand, within Psyr_0832 at 945.106 kb on - strand, within Psyr_0832 at 945.106 kb on - strand, within Psyr_0832 at 945.106 kb on - strand, within Psyr_0832 at 945.106 kb on - strand, within Psyr_0832 at 945.115 kb on - strand, within Psyr_0832 at 945.435 kb on + strand at 945.436 kb on - strand at 945.508 kb on - strand at 945.601 kb on - strand at 945.601 kb on - strand at 945.601 kb on - strand at 945.716 kb on - strand at 945.716 kb on - strand at 945.716 kb on - strand at 945.784 kb on + strand, within Psyr_0833 at 945.785 kb on - strand, within Psyr_0833 at 945.785 kb on - strand, within Psyr_0833 at 945.785 kb on - strand, within Psyr_0833 at 945.785 kb on - strand, within Psyr_0833 at 945.785 kb on - strand, within Psyr_0833 at 945.785 kb on - strand, within Psyr_0833 at 945.785 kb on - strand, within Psyr_0833 at 945.785 kb on - strand, within Psyr_0833 at 945.847 kb on + strand, within Psyr_0833 at 945.848 kb on - strand, within Psyr_0833 at 945.848 kb on - strand, within Psyr_0833 at 945.848 kb on - strand, within Psyr_0833 at 945.880 kb on + strand at 945.880 kb on + strand at 945.880 kb on + strand at 945.881 kb on - strand at 945.881 kb on - strand at 945.881 kb on - strand at 945.882 kb on + strand at 945.882 kb on + strand at 945.882 kb on + strand at 945.882 kb on + strand at 945.882 kb on + strand at 945.882 kb on + strand at 945.882 kb on + strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.886 kb on + strand at 945.886 kb on + strand at 945.886 kb on + strand at 945.886 kb on + strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.910 kb on - strand at 945.910 kb on - strand at 945.953 kb on + strand at 945.953 kb on + strand at 945.953 kb on + strand at 945.954 kb on - strand at 945.954 kb on - strand at 946.223 kb on + strand, within Psyr_0834 at 946.223 kb on + strand, within Psyr_0834 at 946.223 kb on + strand, within Psyr_0834 at 946.224 kb on - strand, within Psyr_0834 at 946.224 kb on - strand, within Psyr_0834 at 946.224 kb on - strand, within Psyr_0834 at 946.224 kb on - strand, within Psyr_0834 at 946.270 kb on - strand, within Psyr_0834 at 946.368 kb on + strand, within Psyr_0834 at 946.368 kb on + strand, within Psyr_0834 at 946.368 kb on + strand, within Psyr_0834 at 946.368 kb on + strand, within Psyr_0834 at 946.369 kb on - strand, within Psyr_0834 at 946.458 kb on + strand, within Psyr_0834 at 946.534 kb on - strand, within Psyr_0834 at 946.538 kb on - strand, within Psyr_0834 at 946.538 kb on - strand, within Psyr_0834 at 946.581 kb on + strand, within Psyr_0834 at 946.718 kb on + strand, within Psyr_0834 at 946.789 kb on - strand at 946.858 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-hydroxybutyric (C) remove 944,751 + Psyr_0832 0.67 -0.9 944,808 + Psyr_0832 0.69 -1.5 944,808 + Psyr_0832 0.69 -2.2 944,955 + Psyr_0832 0.74 -3.2 944,956 - Psyr_0832 0.74 +0.1 944,956 - Psyr_0832 0.74 -3.6 944,956 - Psyr_0832 0.74 -1.5 944,956 - Psyr_0832 0.74 +0.1 945,105 + Psyr_0832 0.79 -0.9 945,106 - Psyr_0832 0.79 +0.1 945,106 - Psyr_0832 0.79 +0.1 945,106 - Psyr_0832 0.79 -1.9 945,106 - Psyr_0832 0.79 -2.2 945,115 - Psyr_0832 0.79 -3.2 945,435 + -1.9 945,436 - +0.1 945,508 - -0.9 945,601 - -2.7 945,601 - -1.9 945,601 - -1.9 945,716 - -3.8 945,716 - +0.3 945,716 - -2.2 945,784 + Psyr_0833 0.40 -1.9 945,785 - Psyr_0833 0.40 -0.5 945,785 - Psyr_0833 0.40 -1.1 945,785 - Psyr_0833 0.40 -1.1 945,785 - Psyr_0833 0.40 -3.0 945,785 - Psyr_0833 0.40 -1.8 945,785 - Psyr_0833 0.40 -0.9 945,785 - Psyr_0833 0.40 +0.1 945,785 - Psyr_0833 0.40 -1.2 945,847 + Psyr_0833 0.75 -2.9 945,848 - Psyr_0833 0.76 -2.7 945,848 - Psyr_0833 0.76 -1.8 945,848 - Psyr_0833 0.76 -2.2 945,880 + -2.5 945,880 + -2.7 945,880 + -2.2 945,881 - -2.5 945,881 - -1.7 945,881 - -0.3 945,882 + -0.9 945,882 + -0.9 945,882 + -2.5 945,882 + -1.9 945,882 + -0.9 945,882 + -0.6 945,882 + +0.1 945,883 - -2.3 945,883 - -3.3 945,883 - -1.1 945,883 - +1.1 945,883 - -0.6 945,883 - -0.9 945,883 - -2.0 945,883 - -2.7 945,883 - -1.3 945,883 - -2.2 945,883 - -0.1 945,883 - -2.1 945,883 - -2.6 945,883 - -1.2 945,883 - -1.5 945,883 - -2.2 945,883 - +1.1 945,883 - -3.0 945,883 - +0.1 945,883 - -2.5 945,883 - -3.7 945,883 - -0.2 945,886 + -1.5 945,886 + -1.9 945,886 + -0.9 945,886 + -0.9 945,887 - -0.3 945,887 - -1.5 945,887 - -0.3 945,887 - +0.1 945,887 - +0.1 945,887 - +1.7 945,887 - -0.6 945,887 - -0.9 945,887 - -1.7 945,887 - +0.1 945,887 - -0.9 945,887 - -2.2 945,887 - -1.5 945,887 - +0.1 945,887 - -3.6 945,887 - -2.3 945,887 - -1.6 945,887 - -0.6 945,887 - -0.5 945,887 - -1.5 945,887 - -2.7 945,887 - -3.7 945,887 - -3.2 945,887 - -1.9 945,887 - -1.9 945,887 - -1.5 945,887 - -3.0 945,887 - -0.9 945,887 - -0.3 945,887 - +0.7 945,887 - +0.3 945,887 - -1.9 945,910 - -0.1 945,910 - -0.5 945,953 + -3.0 945,953 + -1.9 945,953 + -0.6 945,954 - +0.3 945,954 - +0.5 946,223 + Psyr_0834 0.26 -0.2 946,223 + Psyr_0834 0.26 -0.6 946,223 + Psyr_0834 0.26 +0.1 946,224 - Psyr_0834 0.26 -2.7 946,224 - Psyr_0834 0.26 +1.2 946,224 - Psyr_0834 0.26 +1.5 946,224 - Psyr_0834 0.26 +0.1 946,270 - Psyr_0834 0.32 +0.6 946,368 + Psyr_0834 0.43 -0.1 946,368 + Psyr_0834 0.43 -1.1 946,368 + Psyr_0834 0.43 +1.0 946,368 + Psyr_0834 0.43 -1.9 946,369 - Psyr_0834 0.43 +0.7 946,458 + Psyr_0834 0.53 +0.1 946,534 - Psyr_0834 0.61 +0.9 946,538 - Psyr_0834 0.62 +1.1 946,538 - Psyr_0834 0.62 +1.8 946,581 + Psyr_0834 0.67 +0.9 946,718 + Psyr_0834 0.82 +2.1 946,789 - -0.1 946,858 + +0.5
Or see this region's nucleotide sequence